| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024210 |
Definition |
Escherichia phage e4/1c, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Rogunavirinae; Rogunavirus. |
DB of origin |
REFSEQ |
Length |
47112 |
Host Name |
Escherichia |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
72 |
%GC |
44.07 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009036056.1 | NC_024210_p57 | hypothetical protein | phrog_11986 | unknown function | unknown function | -1 | 41342 | 41524 |
| YP_009036002.1 | NC_024210_p3 | endonuclease | phrog_826 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2203 | 2550 |
| YP_009036062.1 | NC_024210_p63 | hypothetical protein | phrog_4841 | unknown function | unknown function | 1 | 43614 | 44156 |
| YP_009036041.1 | NC_024210_p42 | hypothetical protein | phrog_2676 | unknown function | unknown function | 1 | 34684 | 34911 |
| YP_009036067.1 | NC_024210_p68 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 45676 | 45804 |
| YP_009036005.1 | NC_024210_p6 | head morphogenesis protein | phrog_324 | head morphogenesis | head and packaging | 1 | 3996 | 4739 |
| YP_009036045.1 | NC_024210_p46 | hypothetical protein | phrog_4596 | unknown function | unknown function | 1 | 35541 | 35798 |
| YP_009036026.1 | NC_024210_p27 | hypothetical protein | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 22020 | 22982 |
| YP_009036013.1 | NC_024210_p14 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | 1 | 9992 | 10393 |
| YP_009036039.1 | NC_024210_p40 | hypothetical protein | phrog_824 | unknown function | unknown function | 1 | 34045 | 34434 |
| YP_009036037.1 | NC_024210_p38 | transcriptional regulator | phrog_2856 | transcriptional regulator | transcription regulation | -1 | 31535 | 32008 |
| YP_009036003.1 | NC_024210_p4 | HNH endonuclease | singleton | unknown function | unknown function | 1 | 2478 | 2720 |
| YP_009036023.1 | NC_024210_p24 | hypothetical protein | phrog_30 | minor tail protein | tail | 1 | 17169 | 17975 |
| YP_009036061.1 | NC_024210_p62 | hypothetical protein | phrog_5684 | unknown function | unknown function | -1 | 42686 | 42916 |
| YP_009036010.1 | NC_024210_p11 | tail fiber protein | phrog_5073 | tail fiber protein | tail | 1 | 7065 | 8582 |
| YP_009036044.1 | NC_024210_p45 | hypothetical protein | phrog_2817 | unknown function | unknown function | 1 | 35305 | 35544 |
| YP_009036051.1 | NC_024210_p52 | phage-related lysozyme | phrog_7 | endolysin | lysis | 1 | 38235 | 38717 |
| YP_009036043.1 | NC_024210_p44 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 35183 | 35308 |
| YP_009036033.1 | NC_024210_p34 | endonuclease protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 26791 | 27294 |
| YP_009036046.1 | NC_024210_p47 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 35827 | 37077 |
| YP_009036063.1 | NC_024210_p64 | hypothetical protein | phrog_7327 | unknown function | unknown function | 1 | 44156 | 44704 |
| YP_009036029.1 | NC_024210_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24240 | 24806 |
| YP_009036036.1 | NC_024210_p37 | DNA primase | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 30556 | 31482 |
| YP_009036006.1 | NC_024210_p7 | hypothetical protein | phrog_530 | head maturation protease | head and packaging | 1 | 4729 | 5838 |
| YP_009036021.1 | NC_024210_p22 | minor tail protein | phrog_14 | minor tail protein | tail | 1 | 16057 | 16407 |
| YP_009036066.1 | NC_024210_p67 | hypothetical protein | phrog_2452 | unknown function | unknown function | 1 | 45283 | 45603 |
| YP_009036048.1 | NC_024210_p49 | hypothetical protein | phrog_10052 | unknown function | unknown function | 1 | 37530 | 37718 |
| YP_009036060.1 | NC_024210_p61 | hypothetical protein | phrog_4448 | unknown function | unknown function | -1 | 42450 | 42689 |
| YP_009036040.1 | NC_024210_p41 | hypothetical protein | phrog_6031 | unknown function | unknown function | 1 | 34493 | 34687 |
| YP_009036034.1 | NC_024210_p35 | hypothetical protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 27296 | 27718 |
| YP_009036022.1 | NC_024210_p23 | hypothetical protein | phrog_18 | minor tail protein | tail | 1 | 16409 | 17218 |
| YP_009036009.1 | NC_024210_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6594 | 6983 |
| YP_009036028.1 | NC_024210_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23864 | 24235 |
| YP_009036012.1 | NC_024210_p13 | hypothetical protein | phrog_2716 | unknown function | unknown function | 1 | 9703 | 9948 |
| YP_009036053.1 | NC_024210_p54 | YdbL | phrog_2794 | unknown function | unknown function | -1 | 39117 | 39452 |
| YP_009036050.1 | NC_024210_p51 | holin | phrog_2877 | holin | lysis | 1 | 38020 | 38235 |
| YP_009036052.1 | NC_024210_p53 | hypothetical protein | phrog_1804 | Rz-like spanin | lysis | 1 | 38699 | 39103 |
| YP_009036065.1 | NC_024210_p66 | hypothetical protein | phrog_25960 | unknown function | unknown function | 1 | 45128 | 45283 |
| YP_009036047.1 | NC_024210_p48 | hypothetical protein | phrog_7411 | unknown function | unknown function | 1 | 37300 | 37530 |
| YP_009036027.1 | NC_024210_p28 | hypothetical protein | phrog_4281 | unknown function | unknown function | -1 | 22982 | 23302 |
| YP_009036019.1 | NC_024210_p20 | hypothetical protein | phrog_680 | tail length tape measure protein | tail | 1 | 12683 | 12937 |
| YP_009036025.1 | NC_024210_p26 | tail fiber protein | phrog_31 | central tail fiber J | tail | 1 | 18573 | 21989 |
| YP_009036004.1 | NC_024210_p5 | truncated portal protein | phrog_146 | portal protein | head and packaging | 1 | 2764 | 3930 |
| YP_009036064.1 | NC_024210_p65 | hypothetical protein | phrog_8335 | unknown function | unknown function | 1 | 44776 | 45009 |
| YP_009036032.1 | NC_024210_p33 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 26102 | 26749 |
| YP_009036058.1 | NC_024210_p59 | hypothetical protein | phrog_12926 | unknown function | unknown function | -1 | 41920 | 42222 |
| YP_009036020.1 | NC_024210_p21 | tail length tape measure protein precursor | phrog_24 | tail length tape measure protein | tail | 1 | 12945 | 16025 |
| YP_009036008.1 | NC_024210_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6402 | 6560 |
| YP_009036014.1 | NC_024210_p15 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 10381 | 10761 |
| YP_009036011.1 | NC_024210_p12 | hypothetical protein | phrog_264 | major head protein | head and packaging | 1 | 8663 | 9610 |
| YP_009036018.1 | NC_024210_p19 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | 1 | 12306 | 12620 |
| YP_009036042.1 | NC_024210_p43 | hypothetical protein | phrog_3249 | unknown function | unknown function | 1 | 34908 | 35108 |
| YP_009036035.1 | NC_024210_p36 | tail fiber protein | phrog_4818 | tail fiber protein | tail | -1 | 27751 | 30498 |
| YP_009036069.1 | NC_024210_p70 | hypothetical protein | phrog_303 | unknown function | unknown function | 1 | 46034 | 46273 |
| YP_009036068.1 | NC_024210_p69 | hypothetical protein | phrog_3955 | unknown function | unknown function | 1 | 45801 | 46031 |
| YP_009036000.1 | NC_024210_p1 | terminase small subunit | phrog_606 | terminase small subunit | head and packaging | 1 | 3 | 539 |
| YP_009036001.1 | NC_024210_p2 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 634 | 2178 |
| YP_009036071.1 | NC_024210_p72 | hypothetical protein | phrog_2919 | unknown function | unknown function | 1 | 46828 | 47013 |
| YP_009036007.1 | NC_024210_p8 | hypothetical protein | phrog_1989 | unknown function | unknown function | 1 | 5850 | 6374 |
| YP_009036057.1 | NC_024210_p58 | hypothetical protein | phrog_2684 | unknown function | unknown function | -1 | 41541 | 41894 |
| YP_009036038.1 | NC_024210_p39 | hypothetical protein | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 32102 | 34045 |
| YP_009036017.1 | NC_024210_p18 | hypothetical protein | phrog_584 | major tail protein | tail | 1 | 11582 | 12232 |
| YP_009036055.1 | NC_024210_p56 | hypothetical protein | phrog_8121 | unknown function | unknown function | -1 | 41080 | 41259 |
| YP_009036030.1 | NC_024210_p31 | hypothetical protein | phrog_5247 | unknown function | unknown function | 1 | 24880 | 25074 |
| YP_009036031.1 | NC_024210_p32 | exodeoxyribonuclease VIII | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 25078 | 26046 |
| YP_009036016.1 | NC_024210_p17 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 11169 | 11567 |
| YP_009036059.1 | NC_024210_p60 | hypothetical protein | phrog_4548 | unknown function | unknown function | -1 | 42297 | 42449 |
| YP_009036049.1 | NC_024210_p50 | hypothetical protein | phrog_4788 | unknown function | unknown function | 1 | 37731 | 37904 |
| YP_009036024.1 | NC_024210_p25 | tail assembly protein I | phrog_32 | tail assembly protein | tail | 1 | 17947 | 18522 |
| YP_009036070.1 | NC_024210_p71 | hypothetical protein | phrog_10885 | unknown function | unknown function | 1 | 46251 | 46460 |
| YP_009036015.1 | NC_024210_p16 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 10751 | 11179 |
| YP_009036054.1 | NC_024210_p55 | hypothetical protein | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 39457 | 41046 |