Genomic map of Enterococcus phage VD13 (NC_024212)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024212
Definition
Enterococcus phage VD13, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Saphexavirus.
DB of origin
REFSEQ
Length
55726
Host Name
Enterococcus faecalis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
88
%GC
40
Number of singletons
6
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009036436.1 NC_024212_p75 phosphoribosyl-ATP pyrophosphohydrolase family protein phrog_715 MazG-like pyrophosphatase other 1 48483 48788
YP_009036374.1 NC_024212_p13 hypothetical protein phrog_1299 holin lysis 1 4746 4994
YP_009036430.1 NC_024212_p69 hypothetical protein phrog_10028 unknown function unknown function 1 46708 46965
YP_009036370.1 NC_024212_p9 hypothetical protein phrog_15663 unknown function unknown function -1 2920 3177
YP_009036423.1 NC_024212_p62 hypothetical protein phrog_7488 unknown function unknown function 1 43794 44276
YP_009036373.1 NC_024212_p12 hypothetical protein phrog_15507 unknown function unknown function 1 4383 4727
YP_009036429.1 NC_024212_p68 hypothetical protein phrog_13364 unknown function unknown function 1 46520 46708
YP_009036422.1 NC_024212_p61 NUMOD4 motif family protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 43175 43711
YP_009036404.1 NC_024212_p43 hypothetical protein phrog_17071 unknown function unknown function 1 31494 31652
YP_009036441.1 NC_024212_p80 hypothetical protein phrog_12407 unknown function unknown function 1 50922 51296
YP_009036377.1 NC_024212_p16 terminase large subunit phrog_6672 terminase large subunit head and packaging 1 6878 7267
YP_009036409.1 NC_024212_p48 hypothetical protein phrog_14383 unknown function unknown function 1 35111 35335
YP_009036421.1 NC_024212_p60 3'-5' exonuclease family protein phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 40828 43182
YP_009036445.1 NC_024212_p84 hypothetical protein phrog_12898 unknown function unknown function 1 52423 52725
YP_009036444.1 NC_024212_p83 hypothetical protein phrog_15914 unknown function unknown function 1 52251 52397
YP_009036387.1 NC_024212_p26 TP901-1 family major tail protein phrog_41 major tail protein tail 1 13545 14234
YP_009036367.1 NC_024212_p6 hypothetical protein phrog_4188 unknown function unknown function -1 1999 2148
YP_009036378.1 NC_024212_p17 SPP1 family portal protein phrog_64 portal protein head and packaging 1 7324 8859
YP_009036382.1 NC_024212_p21 fibronectin type III domain protein phrog_341 major tail protein tail 1 11415 11855
YP_009036407.1 NC_024212_p46 dNA replication protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 32947 33723
YP_009036425.1 NC_024212_p64 hypothetical protein phrog_13838 ATP-dependent protease other 1 44468 45163
YP_009036440.1 NC_024212_p79 hypothetical protein phrog_13322 unknown function unknown function 1 50543 50929
YP_009036385.1 NC_024212_p24 hypothetical protein phrog_13043 unknown function unknown function 1 12697 13077
YP_009036379.1 NC_024212_p18 hypothetical protein phrog_8089 head morphogenesis head and packaging 1 8871 9626
YP_009036363.1 NC_024212_p2 hypothetical protein phrog_13778 ABC transporter moron, auxiliary metabolic gene and host takeover -1 816 1181
YP_009036424.1 NC_024212_p63 hypothetical protein singleton unknown function unknown function 1 44278 44475
YP_009036416.1 NC_024212_p55 hypothetical protein phrog_12231 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 39052 39615
YP_009036402.1 NC_024212_p41 hypothetical protein phrog_17912 unknown function unknown function 1 30845 31243
YP_009036401.1 NC_024212_p40 hypothetical protein phrog_23928 unknown function unknown function 1 30504 30845
YP_009036432.1 NC_024212_p71 hypothetical protein phrog_13735 unknown function unknown function 1 47170 47361
YP_009036403.1 NC_024212_p42 hypothetical protein phrog_13036 unknown function unknown function 1 31243 31497
YP_009036411.1 NC_024212_p50 hypothetical protein phrog_1706 CRISPR/Cas system associated DNA, RNA and nucleotide metabolism 1 35841 36869
YP_009036438.1 NC_024212_p77 hypothetical protein phrog_19608 unknown function unknown function 1 49803 50030
YP_009036415.1 NC_024212_p54 hypothetical protein phrog_14385 unknown function unknown function 1 38328 38960
YP_009036428.1 NC_024212_p67 hypothetical protein phrog_9042 unknown function unknown function 1 46031 46441
YP_009036393.1 NC_024212_p32 hypothetical protein phrog_7298 unknown function unknown function 1 25010 25297
YP_009036419.1 NC_024212_p58 hypothetical protein phrog_13373 unknown function unknown function 1 40179 40562
YP_009036413.1 NC_024212_p52 crossover junction endodeoxyribonuclease RuvC family protein phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 37335 37769
YP_009036364.1 NC_024212_p3 hypothetical protein phrog_25929 unknown function unknown function -1 1178 1402
YP_009036392.1 NC_024212_p31 minor structural, N-terminal region domain protein phrog_12329 virion structural protein head and packaging 1 21970 24996
YP_009036391.1 NC_024212_p30 tail family protein phrog_14260 tail protein tail 1 17965 21957
YP_009036383.1 NC_024212_p22 head-tail connector family protein phrog_132 head-tail adaptor connector 1 11915 12319
YP_009036365.1 NC_024212_p4 hypothetical protein phrog_18442 unknown function unknown function -1 1422 1724
YP_009036418.1 NC_024212_p57 hypothetical protein phrog_14036 unknown function unknown function 1 39966 40178
YP_009036435.1 NC_024212_p74 hypothetical protein phrog_14163 unknown function unknown function 1 48194 48481
YP_009036384.1 NC_024212_p23 hypothetical protein phrog_13654 unknown function unknown function 1 12335 12712
YP_009036434.1 NC_024212_p73 hypothetical protein phrog_36066 unknown function unknown function 1 48106 48222
YP_009036369.1 NC_024212_p8 hypothetical protein phrog_14024 unknown function unknown function -1 2534 2920
YP_009036417.1 NC_024212_p56 hypothetical protein phrog_13949 unknown function unknown function 1 39745 39966
YP_009036433.1 NC_024212_p72 NUMOD4 motif family protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 47424 47960
YP_009036439.1 NC_024212_p78 hypothetical protein phrog_14566 unknown function unknown function 1 50119 50442
YP_009036371.1 NC_024212_p10 hypothetical protein phrog_13680 unknown function unknown function -1 3177 3491
YP_009036389.1 NC_024212_p28 hypothetical protein phrog_14263 unknown function unknown function 1 14829 15053
YP_009036386.1 NC_024212_p25 hypothetical protein phrog_176 tail terminator connector 1 13090 13524
YP_009036380.1 NC_024212_p19 hypothetical protein phrog_172 head scaffolding protein head and packaging 1 9737 10405
YP_009036362.1 NC_024212_p1 hypothetical protein singleton unknown function unknown function -1 1 365
YP_009036412.1 NC_024212_p51 hypothetical protein phrog_13759 unknown function unknown function 1 36869 37198
YP_009036399.1 NC_024212_p38 hypothetical protein phrog_7571 unknown function unknown function 1 28974 29174
YP_009036437.1 NC_024212_p76 hypothetical protein singleton unknown function unknown function 1 49531 49713
YP_009036448.1 NC_024212_p87 hypothetical protein singleton unknown function unknown function -1 54378 54608
YP_009036410.1 NC_024212_p49 NUMOD4 motif family protein phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism 1 35408 35848
YP_009036449.1 NC_024212_p88 hypothetical protein phrog_12919 unknown function unknown function -1 54601 55422
YP_009036406.1 NC_024212_p45 toprim domain protein phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 31852 32799
YP_009036397.1 NC_024212_p36 hypothetical protein phrog_13813 unknown function unknown function 1 28152 28586
YP_009036366.1 NC_024212_p5 glutaredoxin family protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 1714 1986
YP_009036381.1 NC_024212_p20 major head protein phrog_544 major head protein head and packaging 1 10454 11260
YP_009036395.1 NC_024212_p34 hypothetical protein phrog_6154 unknown function unknown function -1 26341 26769
YP_009036446.1 NC_024212_p85 hypothetical protein singleton unknown function unknown function -1 53836 54015
YP_009036390.1 NC_024212_p29 tail tape measure protein, TP901 family, core region phrog_1533 tail length tape measure protein tail 1 15066 17951
YP_009036396.1 NC_024212_p35 hypothetical protein phrog_6883 unknown function unknown function 1 27275 28099
YP_009036400.1 NC_024212_p39 hypothetical protein singleton unknown function unknown function -1 29961 30080
YP_009036420.1 NC_024212_p59 hypothetical protein phrog_13304 unknown function unknown function 1 40562 40747
YP_009036394.1 NC_024212_p33 CHAP domain protein phrog_7887 endolysin lysis 1 25344 26060
YP_009036398.1 NC_024212_p37 hypothetical protein phrog_12542 unknown function unknown function 1 28589 28984
YP_009036443.1 NC_024212_p82 hypothetical protein phrog_12228 unknown function unknown function 1 51692 52126
YP_009036447.1 NC_024212_p86 hypothetical protein phrog_13641 unknown function unknown function -1 54164 54376
YP_009036372.1 NC_024212_p11 terminase small subunit phrog_51 terminase small subunit head and packaging 1 3772 4368
YP_009036375.1 NC_024212_p14 terminase large subunit, PBSX family phrog_3717 terminase large subunit head and packaging 1 5057 5860
YP_009036442.1 NC_024212_p81 hypothetical protein phrog_13537 unknown function unknown function 1 51377 51511
YP_009036405.1 NC_024212_p44 hypothetical protein phrog_14109 unknown function unknown function 1 31652 31840
YP_009036408.1 NC_024212_p47 dnaB-like helicase C terminal domain protein phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 33735 35099
YP_009036431.1 NC_024212_p70 hypothetical protein phrog_37175 unknown function unknown function 1 46965 47180
YP_009036368.1 NC_024212_p7 hypothetical protein phrog_13576 methyltransferase other -1 2152 2532
YP_009036376.1 NC_024212_p15 group I intron endonuclease family protein phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism 1 5991 6593
YP_009036427.1 NC_024212_p66 hypothetical protein phrog_14376 unknown function unknown function 1 45817 46017
YP_009036426.1 NC_024212_p65 hypothetical protein phrog_3523 unknown function unknown function 1 45222 45806
YP_009036388.1 NC_024212_p27 hypothetical protein phrog_14243 unknown function unknown function 1 14378 14818
YP_009036414.1 NC_024212_p53 AAA domain protein phrog_139 deoxynucleoside monophosphate kinase other 1 37766 38335