| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024212 |
Definition |
Enterococcus phage VD13, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Saphexavirus. |
DB of origin |
REFSEQ |
Length |
55726 |
Host Name |
Enterococcus faecalis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
88 |
%GC |
40 |
Number of singletons |
6 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009036436.1 | NC_024212_p75 | phosphoribosyl-ATP pyrophosphohydrolase family protein | phrog_715 | MazG-like pyrophosphatase | other | 1 | 48483 | 48788 |
| YP_009036374.1 | NC_024212_p13 | hypothetical protein | phrog_1299 | holin | lysis | 1 | 4746 | 4994 |
| YP_009036430.1 | NC_024212_p69 | hypothetical protein | phrog_10028 | unknown function | unknown function | 1 | 46708 | 46965 |
| YP_009036370.1 | NC_024212_p9 | hypothetical protein | phrog_15663 | unknown function | unknown function | -1 | 2920 | 3177 |
| YP_009036423.1 | NC_024212_p62 | hypothetical protein | phrog_7488 | unknown function | unknown function | 1 | 43794 | 44276 |
| YP_009036373.1 | NC_024212_p12 | hypothetical protein | phrog_15507 | unknown function | unknown function | 1 | 4383 | 4727 |
| YP_009036429.1 | NC_024212_p68 | hypothetical protein | phrog_13364 | unknown function | unknown function | 1 | 46520 | 46708 |
| YP_009036422.1 | NC_024212_p61 | NUMOD4 motif family protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43175 | 43711 |
| YP_009036404.1 | NC_024212_p43 | hypothetical protein | phrog_17071 | unknown function | unknown function | 1 | 31494 | 31652 |
| YP_009036441.1 | NC_024212_p80 | hypothetical protein | phrog_12407 | unknown function | unknown function | 1 | 50922 | 51296 |
| YP_009036377.1 | NC_024212_p16 | terminase large subunit | phrog_6672 | terminase large subunit | head and packaging | 1 | 6878 | 7267 |
| YP_009036409.1 | NC_024212_p48 | hypothetical protein | phrog_14383 | unknown function | unknown function | 1 | 35111 | 35335 |
| YP_009036421.1 | NC_024212_p60 | 3'-5' exonuclease family protein | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 40828 | 43182 |
| YP_009036445.1 | NC_024212_p84 | hypothetical protein | phrog_12898 | unknown function | unknown function | 1 | 52423 | 52725 |
| YP_009036444.1 | NC_024212_p83 | hypothetical protein | phrog_15914 | unknown function | unknown function | 1 | 52251 | 52397 |
| YP_009036387.1 | NC_024212_p26 | TP901-1 family major tail protein | phrog_41 | major tail protein | tail | 1 | 13545 | 14234 |
| YP_009036367.1 | NC_024212_p6 | hypothetical protein | phrog_4188 | unknown function | unknown function | -1 | 1999 | 2148 |
| YP_009036378.1 | NC_024212_p17 | SPP1 family portal protein | phrog_64 | portal protein | head and packaging | 1 | 7324 | 8859 |
| YP_009036382.1 | NC_024212_p21 | fibronectin type III domain protein | phrog_341 | major tail protein | tail | 1 | 11415 | 11855 |
| YP_009036407.1 | NC_024212_p46 | dNA replication protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 32947 | 33723 |
| YP_009036425.1 | NC_024212_p64 | hypothetical protein | phrog_13838 | ATP-dependent protease | other | 1 | 44468 | 45163 |
| YP_009036440.1 | NC_024212_p79 | hypothetical protein | phrog_13322 | unknown function | unknown function | 1 | 50543 | 50929 |
| YP_009036385.1 | NC_024212_p24 | hypothetical protein | phrog_13043 | unknown function | unknown function | 1 | 12697 | 13077 |
| YP_009036379.1 | NC_024212_p18 | hypothetical protein | phrog_8089 | head morphogenesis | head and packaging | 1 | 8871 | 9626 |
| YP_009036363.1 | NC_024212_p2 | hypothetical protein | phrog_13778 | ABC transporter | moron, auxiliary metabolic gene and host takeover | -1 | 816 | 1181 |
| YP_009036424.1 | NC_024212_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44278 | 44475 |
| YP_009036416.1 | NC_024212_p55 | hypothetical protein | phrog_12231 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 39052 | 39615 |
| YP_009036402.1 | NC_024212_p41 | hypothetical protein | phrog_17912 | unknown function | unknown function | 1 | 30845 | 31243 |
| YP_009036401.1 | NC_024212_p40 | hypothetical protein | phrog_23928 | unknown function | unknown function | 1 | 30504 | 30845 |
| YP_009036432.1 | NC_024212_p71 | hypothetical protein | phrog_13735 | unknown function | unknown function | 1 | 47170 | 47361 |
| YP_009036403.1 | NC_024212_p42 | hypothetical protein | phrog_13036 | unknown function | unknown function | 1 | 31243 | 31497 |
| YP_009036411.1 | NC_024212_p50 | hypothetical protein | phrog_1706 | CRISPR/Cas system associated | DNA, RNA and nucleotide metabolism | 1 | 35841 | 36869 |
| YP_009036438.1 | NC_024212_p77 | hypothetical protein | phrog_19608 | unknown function | unknown function | 1 | 49803 | 50030 |
| YP_009036415.1 | NC_024212_p54 | hypothetical protein | phrog_14385 | unknown function | unknown function | 1 | 38328 | 38960 |
| YP_009036428.1 | NC_024212_p67 | hypothetical protein | phrog_9042 | unknown function | unknown function | 1 | 46031 | 46441 |
| YP_009036393.1 | NC_024212_p32 | hypothetical protein | phrog_7298 | unknown function | unknown function | 1 | 25010 | 25297 |
| YP_009036419.1 | NC_024212_p58 | hypothetical protein | phrog_13373 | unknown function | unknown function | 1 | 40179 | 40562 |
| YP_009036413.1 | NC_024212_p52 | crossover junction endodeoxyribonuclease RuvC family protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 37335 | 37769 |
| YP_009036364.1 | NC_024212_p3 | hypothetical protein | phrog_25929 | unknown function | unknown function | -1 | 1178 | 1402 |
| YP_009036392.1 | NC_024212_p31 | minor structural, N-terminal region domain protein | phrog_12329 | virion structural protein | head and packaging | 1 | 21970 | 24996 |
| YP_009036391.1 | NC_024212_p30 | tail family protein | phrog_14260 | tail protein | tail | 1 | 17965 | 21957 |
| YP_009036383.1 | NC_024212_p22 | head-tail connector family protein | phrog_132 | head-tail adaptor | connector | 1 | 11915 | 12319 |
| YP_009036365.1 | NC_024212_p4 | hypothetical protein | phrog_18442 | unknown function | unknown function | -1 | 1422 | 1724 |
| YP_009036418.1 | NC_024212_p57 | hypothetical protein | phrog_14036 | unknown function | unknown function | 1 | 39966 | 40178 |
| YP_009036435.1 | NC_024212_p74 | hypothetical protein | phrog_14163 | unknown function | unknown function | 1 | 48194 | 48481 |
| YP_009036384.1 | NC_024212_p23 | hypothetical protein | phrog_13654 | unknown function | unknown function | 1 | 12335 | 12712 |
| YP_009036434.1 | NC_024212_p73 | hypothetical protein | phrog_36066 | unknown function | unknown function | 1 | 48106 | 48222 |
| YP_009036369.1 | NC_024212_p8 | hypothetical protein | phrog_14024 | unknown function | unknown function | -1 | 2534 | 2920 |
| YP_009036417.1 | NC_024212_p56 | hypothetical protein | phrog_13949 | unknown function | unknown function | 1 | 39745 | 39966 |
| YP_009036433.1 | NC_024212_p72 | NUMOD4 motif family protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 47424 | 47960 |
| YP_009036439.1 | NC_024212_p78 | hypothetical protein | phrog_14566 | unknown function | unknown function | 1 | 50119 | 50442 |
| YP_009036371.1 | NC_024212_p10 | hypothetical protein | phrog_13680 | unknown function | unknown function | -1 | 3177 | 3491 |
| YP_009036389.1 | NC_024212_p28 | hypothetical protein | phrog_14263 | unknown function | unknown function | 1 | 14829 | 15053 |
| YP_009036386.1 | NC_024212_p25 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 13090 | 13524 |
| YP_009036380.1 | NC_024212_p19 | hypothetical protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 9737 | 10405 |
| YP_009036362.1 | NC_024212_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1 | 365 |
| YP_009036412.1 | NC_024212_p51 | hypothetical protein | phrog_13759 | unknown function | unknown function | 1 | 36869 | 37198 |
| YP_009036399.1 | NC_024212_p38 | hypothetical protein | phrog_7571 | unknown function | unknown function | 1 | 28974 | 29174 |
| YP_009036437.1 | NC_024212_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49531 | 49713 |
| YP_009036448.1 | NC_024212_p87 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54378 | 54608 |
| YP_009036410.1 | NC_024212_p49 | NUMOD4 motif family protein | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 35408 | 35848 |
| YP_009036449.1 | NC_024212_p88 | hypothetical protein | phrog_12919 | unknown function | unknown function | -1 | 54601 | 55422 |
| YP_009036406.1 | NC_024212_p45 | toprim domain protein | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 31852 | 32799 |
| YP_009036397.1 | NC_024212_p36 | hypothetical protein | phrog_13813 | unknown function | unknown function | 1 | 28152 | 28586 |
| YP_009036366.1 | NC_024212_p5 | glutaredoxin family protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 1714 | 1986 |
| YP_009036381.1 | NC_024212_p20 | major head protein | phrog_544 | major head protein | head and packaging | 1 | 10454 | 11260 |
| YP_009036395.1 | NC_024212_p34 | hypothetical protein | phrog_6154 | unknown function | unknown function | -1 | 26341 | 26769 |
| YP_009036446.1 | NC_024212_p85 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53836 | 54015 |
| YP_009036390.1 | NC_024212_p29 | tail tape measure protein, TP901 family, core region | phrog_1533 | tail length tape measure protein | tail | 1 | 15066 | 17951 |
| YP_009036396.1 | NC_024212_p35 | hypothetical protein | phrog_6883 | unknown function | unknown function | 1 | 27275 | 28099 |
| YP_009036400.1 | NC_024212_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29961 | 30080 |
| YP_009036420.1 | NC_024212_p59 | hypothetical protein | phrog_13304 | unknown function | unknown function | 1 | 40562 | 40747 |
| YP_009036394.1 | NC_024212_p33 | CHAP domain protein | phrog_7887 | endolysin | lysis | 1 | 25344 | 26060 |
| YP_009036398.1 | NC_024212_p37 | hypothetical protein | phrog_12542 | unknown function | unknown function | 1 | 28589 | 28984 |
| YP_009036443.1 | NC_024212_p82 | hypothetical protein | phrog_12228 | unknown function | unknown function | 1 | 51692 | 52126 |
| YP_009036447.1 | NC_024212_p86 | hypothetical protein | phrog_13641 | unknown function | unknown function | -1 | 54164 | 54376 |
| YP_009036372.1 | NC_024212_p11 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 3772 | 4368 |
| YP_009036375.1 | NC_024212_p14 | terminase large subunit, PBSX family | phrog_3717 | terminase large subunit | head and packaging | 1 | 5057 | 5860 |
| YP_009036442.1 | NC_024212_p81 | hypothetical protein | phrog_13537 | unknown function | unknown function | 1 | 51377 | 51511 |
| YP_009036405.1 | NC_024212_p44 | hypothetical protein | phrog_14109 | unknown function | unknown function | 1 | 31652 | 31840 |
| YP_009036408.1 | NC_024212_p47 | dnaB-like helicase C terminal domain protein | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 33735 | 35099 |
| YP_009036431.1 | NC_024212_p70 | hypothetical protein | phrog_37175 | unknown function | unknown function | 1 | 46965 | 47180 |
| YP_009036368.1 | NC_024212_p7 | hypothetical protein | phrog_13576 | methyltransferase | other | -1 | 2152 | 2532 |
| YP_009036376.1 | NC_024212_p15 | group I intron endonuclease family protein | phrog_314 | homing endonuclease | DNA, RNA and nucleotide metabolism | 1 | 5991 | 6593 |
| YP_009036427.1 | NC_024212_p66 | hypothetical protein | phrog_14376 | unknown function | unknown function | 1 | 45817 | 46017 |
| YP_009036426.1 | NC_024212_p65 | hypothetical protein | phrog_3523 | unknown function | unknown function | 1 | 45222 | 45806 |
| YP_009036388.1 | NC_024212_p27 | hypothetical protein | phrog_14243 | unknown function | unknown function | 1 | 14378 | 14818 |
| YP_009036414.1 | NC_024212_p53 | AAA domain protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 37766 | 38335 |