| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024215 |
Definition |
Lactococcus phage P078, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
54452 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
78 |
%GC |
33.51 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009036845.1 | NC_024215_p20 | hypothetical protein | phrog_7064 | tail protein | tail | 1 | 20328 | 21524 |
| YP_009036839.1 | NC_024215_p14 | cell adhesion domain-containing protein | phrog_2645 | major tail protein | tail | 1 | 9463 | 10380 |
| YP_009036882.1 | NC_024215_p57 | hypothetical protein | phrog_35542 | unknown function | unknown function | 1 | 39600 | 39791 |
| YP_009036898.1 | NC_024215_p73 | hypothetical protein | phrog_3953 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 48387 | 48962 |
| YP_009036869.1 | NC_024215_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30363 | 30539 |
| YP_009036860.1 | NC_024215_p35 | hypothetical protein | phrog_20237 | unknown function | unknown function | 1 | 27383 | 27718 |
| YP_009036835.1 | NC_024215_p10 | tail length tape-measure protein | phrog_12 | portal protein | head and packaging | 1 | 5181 | 6476 |
| YP_009036876.1 | NC_024215_p51 | hypothetical protein | phrog_4210 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 33791 | 37825 |
| YP_009036844.1 | NC_024215_p19 | hypothetical protein | phrog_21674 | tail protein | tail | 1 | 16951 | 20328 |
| YP_009036841.1 | NC_024215_p16 | hypothetical protein | phrog_4338 | unknown function | unknown function | 1 | 10934 | 11515 |
| YP_009036885.1 | NC_024215_p60 | hypothetical protein | phrog_18895 | unknown function | unknown function | 1 | 40950 | 41174 |
| YP_009036863.1 | NC_024215_p38 | hypothetical protein | phrog_19725 | unknown function | unknown function | 1 | 28415 | 28531 |
| YP_009036873.1 | NC_024215_p48 | hypothetical protein | phrog_20041 | unknown function | unknown function | 1 | 32209 | 32442 |
| YP_009036852.1 | NC_024215_p27 | hypothetical protein | phrog_19183 | unknown function | unknown function | 1 | 24430 | 24708 |
| YP_009036903.1 | NC_024215_p78 | hypothetical protein | phrog_4303 | unknown function | unknown function | 1 | 54103 | 54333 |
| YP_009036846.1 | NC_024215_p21 | hypothetical protein | phrog_21087 | unknown function | unknown function | 1 | 21527 | 21841 |
| YP_009036889.1 | NC_024215_p64 | hypothetical protein | phrog_21846 | unknown function | unknown function | 1 | 42579 | 43643 |
| YP_009036830.1 | NC_024215_p5 | homing endonuclease | phrog_4321 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 1675 | 2070 |
| YP_009036851.1 | NC_024215_p26 | hypothetical protein | phrog_20653 | unknown function | unknown function | 1 | 24142 | 24393 |
| YP_009036827.1 | NC_024215_p2 | hypothetical protein | phrog_17025 | unknown function | unknown function | 1 | 628 | 939 |
| YP_009036878.1 | NC_024215_p53 | hypothetical protein | phrog_18754 | unknown function | unknown function | 1 | 38098 | 38352 |
| YP_009036838.1 | NC_024215_p13 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 9134 | 9448 |
| YP_009036849.1 | NC_024215_p24 | hypothetical protein | phrog_19351 | unknown function | unknown function | 1 | 23363 | 23617 |
| YP_009036897.1 | NC_024215_p72 | hypothetical protein | phrog_4997 | unknown function | unknown function | 1 | 48014 | 48361 |
| YP_009036886.1 | NC_024215_p61 | hypothetical protein | phrog_3962 | unknown function | unknown function | 1 | 41171 | 41686 |
| YP_009036853.1 | NC_024215_p28 | hypothetical protein | phrog_21426 | unknown function | unknown function | 1 | 24705 | 25076 |
| YP_009036847.1 | NC_024215_p22 | hypothetical protein | phrog_21913 | unknown function | unknown function | 1 | 21831 | 22955 |
| YP_009036877.1 | NC_024215_p52 | hypothetical protein | phrog_19543 | unknown function | unknown function | 1 | 37838 | 38098 |
| YP_009036850.1 | NC_024215_p25 | hypothetical protein | phrog_19023 | unknown function | unknown function | 1 | 23726 | 23986 |
| YP_009036890.1 | NC_024215_p65 | hypothetical protein | phrog_20361 | unknown function | unknown function | 1 | 43646 | 43813 |
| YP_009036872.1 | NC_024215_p47 | hypothetical protein | phrog_20304 | unknown function | unknown function | 1 | 31664 | 32212 |
| YP_009036858.1 | NC_024215_p33 | hypothetical protein | phrog_23609 | unknown function | unknown function | 1 | 26714 | 27016 |
| YP_009036866.1 | NC_024215_p41 | hypothetical protein | phrog_10686 | unknown function | unknown function | 1 | 29346 | 29606 |
| YP_009036829.1 | NC_024215_p4 | hypothetical protein | phrog_4259 | unknown function | unknown function | 1 | 1298 | 1672 |
| YP_009036892.1 | NC_024215_p67 | hypothetical protein | phrog_21453 | unknown function | unknown function | 1 | 44381 | 44872 |
| YP_009036842.1 | NC_024215_p17 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 11490 | 11873 |
| YP_009036861.1 | NC_024215_p36 | hypothetical protein | phrog_17482 | unknown function | unknown function | 1 | 27699 | 27956 |
| YP_009036870.1 | NC_024215_p45 | hypothetical protein | phrog_20422 | unknown function | unknown function | 1 | 30536 | 30667 |
| YP_009036874.1 | NC_024215_p49 | hypothetical protein | phrog_17887 | unknown function | unknown function | 1 | 32439 | 33599 |
| YP_009036881.1 | NC_024215_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39205 | 39384 |
| YP_009036840.1 | NC_024215_p15 | hypothetical protein | phrog_4282 | unknown function | unknown function | 1 | 10418 | 10852 |
| YP_009036879.1 | NC_024215_p54 | hypothetical protein | phrog_20651 | unknown function | unknown function | 1 | 38352 | 38996 |
| YP_009036888.1 | NC_024215_p63 | hypothetical protein | phrog_21029 | unknown function | unknown function | 1 | 41920 | 42579 |
| YP_009036900.1 | NC_024215_p75 | hypothetical protein | phrog_17479 | unknown function | unknown function | 1 | 49711 | 50007 |
| YP_009036834.1 | NC_024215_p9 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 3451 | 5181 |
| YP_009036899.1 | NC_024215_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49189 | 49350 |
| YP_009036864.1 | NC_024215_p39 | hypothetical protein | phrog_4079 | unknown function | unknown function | 1 | 28531 | 29214 |
| YP_009036831.1 | NC_024215_p6 | hypothetical protein | phrog_4247 | virion structural protein | head and packaging | 1 | 2085 | 2441 |
| YP_009036865.1 | NC_024215_p40 | hypothetical protein | phrog_21556 | unknown function | unknown function | 1 | 29228 | 29344 |
| YP_009036826.1 | NC_024215_p1 | hypothetical protein | phrog_17502 | unknown function | unknown function | 1 | 230 | 625 |
| YP_009036857.1 | NC_024215_p32 | hypothetical protein | phrog_20825 | unknown function | unknown function | 1 | 26368 | 26673 |
| YP_009036843.1 | NC_024215_p18 | hypothetical protein | phrog_4372 | tail length tape measure protein | tail | 1 | 11873 | 16951 |
| YP_009036848.1 | NC_024215_p23 | hypothetical protein | phrog_17080 | unknown function | unknown function | 1 | 23041 | 23331 |
| YP_009036902.1 | NC_024215_p77 | hypothetical protein | phrog_4291 | RNA-dependent RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 51132 | 54098 |
| YP_009036859.1 | NC_024215_p34 | hypothetical protein | phrog_9078 | unknown function | unknown function | 1 | 27021 | 27383 |
| YP_009036895.1 | NC_024215_p70 | hypothetical protein | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 46235 | 47458 |
| YP_009036868.1 | NC_024215_p43 | hypothetical protein | phrog_19247 | unknown function | unknown function | 1 | 29849 | 30139 |
| YP_009036891.1 | NC_024215_p66 | hypothetical protein | phrog_37996 | unknown function | unknown function | 1 | 43801 | 44391 |
| YP_009036862.1 | NC_024215_p37 | hypothetical protein | phrog_21519 | unknown function | unknown function | 1 | 27959 | 28300 |
| YP_009036837.1 | NC_024215_p12 | hypothetical protein | phrog_4270 | unknown function | unknown function | 1 | 8779 | 9141 |
| YP_009036854.1 | NC_024215_p29 | hypothetical protein | phrog_18812 | unknown function | unknown function | 1 | 25124 | 25498 |
| YP_009036832.1 | NC_024215_p7 | hypothetical protein | phrog_19428 | unknown function | unknown function | 1 | 2431 | 2808 |
| YP_009036828.1 | NC_024215_p3 | hypothetical protein | phrog_6918 | holin | lysis | 1 | 941 | 1273 |
| YP_009036880.1 | NC_024215_p55 | hypothetical protein | phrog_3855 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 38972 | 39205 |
| YP_009036894.1 | NC_024215_p69 | hypothetical protein | phrog_4787 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45655 | 46233 |
| YP_009036896.1 | NC_024215_p71 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 47455 | 47751 |
| YP_009036887.1 | NC_024215_p62 | hypothetical protein | phrog_14776 | unknown function | unknown function | 1 | 41676 | 41930 |
| YP_009036875.1 | NC_024215_p50 | hypothetical protein | phrog_21864 | unknown function | unknown function | 1 | 33592 | 33777 |
| YP_009036884.1 | NC_024215_p59 | hypothetical protein | phrog_21840 | unknown function | unknown function | 1 | 40462 | 40953 |
| YP_009036867.1 | NC_024215_p42 | hypothetical protein | phrog_20861 | unknown function | unknown function | 1 | 29608 | 29844 |
| YP_009036901.1 | NC_024215_p76 | lysin | phrog_1794 | amidase | lysis | 1 | 50026 | 51114 |
| YP_009036871.1 | NC_024215_p46 | hypothetical protein | phrog_2152 | unknown function | unknown function | 1 | 30754 | 31593 |
| YP_009036836.1 | NC_024215_p11 | hypothetical protein | phrog_3270 | head maturation protease | head and packaging | 1 | 6517 | 8763 |
| YP_009036833.1 | NC_024215_p8 | hypothetical protein | phrog_11022 | unknown function | unknown function | 1 | 2818 | 3447 |
| YP_009036856.1 | NC_024215_p31 | hypothetical protein | phrog_19193 | unknown function | unknown function | 1 | 25985 | 26317 |
| YP_009036855.1 | NC_024215_p30 | hypothetical protein | phrog_9516 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 25537 | 25995 |
| YP_009036893.1 | NC_024215_p68 | hypothetical protein | phrog_21395 | unknown function | unknown function | 1 | 44869 | 45348 |
| YP_009036883.1 | NC_024215_p58 | hypothetical protein | phrog_10686 | unknown function | unknown function | 1 | 40145 | 40459 |