Genomic map of Lactococcus phage P078 (NC_024215)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024215
Definition
Lactococcus phage P078, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
54452
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
78
%GC
33.51
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009036845.1 NC_024215_p20 hypothetical protein phrog_7064 tail protein tail 1 20328 21524
YP_009036839.1 NC_024215_p14 cell adhesion domain-containing protein phrog_2645 major tail protein tail 1 9463 10380
YP_009036882.1 NC_024215_p57 hypothetical protein phrog_35542 unknown function unknown function 1 39600 39791
YP_009036898.1 NC_024215_p73 hypothetical protein phrog_3953 exonuclease DNA, RNA and nucleotide metabolism 1 48387 48962
YP_009036869.1 NC_024215_p44 hypothetical protein singleton unknown function unknown function 1 30363 30539
YP_009036860.1 NC_024215_p35 hypothetical protein phrog_20237 unknown function unknown function 1 27383 27718
YP_009036835.1 NC_024215_p10 tail length tape-measure protein phrog_12 portal protein head and packaging 1 5181 6476
YP_009036876.1 NC_024215_p51 hypothetical protein phrog_4210 DNA polymerase DNA, RNA and nucleotide metabolism 1 33791 37825
YP_009036844.1 NC_024215_p19 hypothetical protein phrog_21674 tail protein tail 1 16951 20328
YP_009036841.1 NC_024215_p16 hypothetical protein phrog_4338 unknown function unknown function 1 10934 11515
YP_009036885.1 NC_024215_p60 hypothetical protein phrog_18895 unknown function unknown function 1 40950 41174
YP_009036863.1 NC_024215_p38 hypothetical protein phrog_19725 unknown function unknown function 1 28415 28531
YP_009036873.1 NC_024215_p48 hypothetical protein phrog_20041 unknown function unknown function 1 32209 32442
YP_009036852.1 NC_024215_p27 hypothetical protein phrog_19183 unknown function unknown function 1 24430 24708
YP_009036903.1 NC_024215_p78 hypothetical protein phrog_4303 unknown function unknown function 1 54103 54333
YP_009036846.1 NC_024215_p21 hypothetical protein phrog_21087 unknown function unknown function 1 21527 21841
YP_009036889.1 NC_024215_p64 hypothetical protein phrog_21846 unknown function unknown function 1 42579 43643
YP_009036830.1 NC_024215_p5 homing endonuclease phrog_4321 HNH endonuclease DNA, RNA and nucleotide metabolism 1 1675 2070
YP_009036851.1 NC_024215_p26 hypothetical protein phrog_20653 unknown function unknown function 1 24142 24393
YP_009036827.1 NC_024215_p2 hypothetical protein phrog_17025 unknown function unknown function 1 628 939
YP_009036878.1 NC_024215_p53 hypothetical protein phrog_18754 unknown function unknown function 1 38098 38352
YP_009036838.1 NC_024215_p13 hypothetical protein phrog_78 tail terminator connector 1 9134 9448
YP_009036849.1 NC_024215_p24 hypothetical protein phrog_19351 unknown function unknown function 1 23363 23617
YP_009036897.1 NC_024215_p72 hypothetical protein phrog_4997 unknown function unknown function 1 48014 48361
YP_009036886.1 NC_024215_p61 hypothetical protein phrog_3962 unknown function unknown function 1 41171 41686
YP_009036853.1 NC_024215_p28 hypothetical protein phrog_21426 unknown function unknown function 1 24705 25076
YP_009036847.1 NC_024215_p22 hypothetical protein phrog_21913 unknown function unknown function 1 21831 22955
YP_009036877.1 NC_024215_p52 hypothetical protein phrog_19543 unknown function unknown function 1 37838 38098
YP_009036850.1 NC_024215_p25 hypothetical protein phrog_19023 unknown function unknown function 1 23726 23986
YP_009036890.1 NC_024215_p65 hypothetical protein phrog_20361 unknown function unknown function 1 43646 43813
YP_009036872.1 NC_024215_p47 hypothetical protein phrog_20304 unknown function unknown function 1 31664 32212
YP_009036858.1 NC_024215_p33 hypothetical protein phrog_23609 unknown function unknown function 1 26714 27016
YP_009036866.1 NC_024215_p41 hypothetical protein phrog_10686 unknown function unknown function 1 29346 29606
YP_009036829.1 NC_024215_p4 hypothetical protein phrog_4259 unknown function unknown function 1 1298 1672
YP_009036892.1 NC_024215_p67 hypothetical protein phrog_21453 unknown function unknown function 1 44381 44872
YP_009036842.1 NC_024215_p17 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 11490 11873
YP_009036861.1 NC_024215_p36 hypothetical protein phrog_17482 unknown function unknown function 1 27699 27956
YP_009036870.1 NC_024215_p45 hypothetical protein phrog_20422 unknown function unknown function 1 30536 30667
YP_009036874.1 NC_024215_p49 hypothetical protein phrog_17887 unknown function unknown function 1 32439 33599
YP_009036881.1 NC_024215_p56 hypothetical protein singleton unknown function unknown function 1 39205 39384
YP_009036840.1 NC_024215_p15 hypothetical protein phrog_4282 unknown function unknown function 1 10418 10852
YP_009036879.1 NC_024215_p54 hypothetical protein phrog_20651 unknown function unknown function 1 38352 38996
YP_009036888.1 NC_024215_p63 hypothetical protein phrog_21029 unknown function unknown function 1 41920 42579
YP_009036900.1 NC_024215_p75 hypothetical protein phrog_17479 unknown function unknown function 1 49711 50007
YP_009036834.1 NC_024215_p9 terminase large subunit phrog_9 terminase large subunit head and packaging 1 3451 5181
YP_009036899.1 NC_024215_p74 hypothetical protein singleton unknown function unknown function 1 49189 49350
YP_009036864.1 NC_024215_p39 hypothetical protein phrog_4079 unknown function unknown function 1 28531 29214
YP_009036831.1 NC_024215_p6 hypothetical protein phrog_4247 virion structural protein head and packaging 1 2085 2441
YP_009036865.1 NC_024215_p40 hypothetical protein phrog_21556 unknown function unknown function 1 29228 29344
YP_009036826.1 NC_024215_p1 hypothetical protein phrog_17502 unknown function unknown function 1 230 625
YP_009036857.1 NC_024215_p32 hypothetical protein phrog_20825 unknown function unknown function 1 26368 26673
YP_009036843.1 NC_024215_p18 hypothetical protein phrog_4372 tail length tape measure protein tail 1 11873 16951
YP_009036848.1 NC_024215_p23 hypothetical protein phrog_17080 unknown function unknown function 1 23041 23331
YP_009036902.1 NC_024215_p77 hypothetical protein phrog_4291 RNA-dependent RNA polymerase DNA, RNA and nucleotide metabolism 1 51132 54098
YP_009036859.1 NC_024215_p34 hypothetical protein phrog_9078 unknown function unknown function 1 27021 27383
YP_009036895.1 NC_024215_p70 hypothetical protein phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 46235 47458
YP_009036868.1 NC_024215_p43 hypothetical protein phrog_19247 unknown function unknown function 1 29849 30139
YP_009036891.1 NC_024215_p66 hypothetical protein phrog_37996 unknown function unknown function 1 43801 44391
YP_009036862.1 NC_024215_p37 hypothetical protein phrog_21519 unknown function unknown function 1 27959 28300
YP_009036837.1 NC_024215_p12 hypothetical protein phrog_4270 unknown function unknown function 1 8779 9141
YP_009036854.1 NC_024215_p29 hypothetical protein phrog_18812 unknown function unknown function 1 25124 25498
YP_009036832.1 NC_024215_p7 hypothetical protein phrog_19428 unknown function unknown function 1 2431 2808
YP_009036828.1 NC_024215_p3 hypothetical protein phrog_6918 holin lysis 1 941 1273
YP_009036880.1 NC_024215_p55 hypothetical protein phrog_3855 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 38972 39205
YP_009036894.1 NC_024215_p69 hypothetical protein phrog_4787 single strand annealing protein DNA, RNA and nucleotide metabolism 1 45655 46233
YP_009036896.1 NC_024215_p71 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 47455 47751
YP_009036887.1 NC_024215_p62 hypothetical protein phrog_14776 unknown function unknown function 1 41676 41930
YP_009036875.1 NC_024215_p50 hypothetical protein phrog_21864 unknown function unknown function 1 33592 33777
YP_009036884.1 NC_024215_p59 hypothetical protein phrog_21840 unknown function unknown function 1 40462 40953
YP_009036867.1 NC_024215_p42 hypothetical protein phrog_20861 unknown function unknown function 1 29608 29844
YP_009036901.1 NC_024215_p76 lysin phrog_1794 amidase lysis 1 50026 51114
YP_009036871.1 NC_024215_p46 hypothetical protein phrog_2152 unknown function unknown function 1 30754 31593
YP_009036836.1 NC_024215_p11 hypothetical protein phrog_3270 head maturation protease head and packaging 1 6517 8763
YP_009036833.1 NC_024215_p8 hypothetical protein phrog_11022 unknown function unknown function 1 2818 3447
YP_009036856.1 NC_024215_p31 hypothetical protein phrog_19193 unknown function unknown function 1 25985 26317
YP_009036855.1 NC_024215_p30 hypothetical protein phrog_9516 replication initiation protein DNA, RNA and nucleotide metabolism 1 25537 25995
YP_009036893.1 NC_024215_p68 hypothetical protein phrog_21395 unknown function unknown function 1 44869 45348
YP_009036883.1 NC_024215_p58 hypothetical protein phrog_10686 unknown function unknown function 1 40145 40459