Genomic map of Podovirus Lau218 (NC_024329)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024329
Definition
Podovirus Lau218 strain Abe, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Lauvirus.
DB of origin
REFSEQ
Length
39425
Host Name
metagenomic
Host domain
Bacteria
Is prophage?
undef
Number of proteins
48
%GC
34.69
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009042149.1 NC_024329_p18 hypothetical protein phrog_26586 unknown function unknown function 1 12592 12786
YP_009042175.1 NC_024329_p44 hypothetical protein phrog_23124 unknown function unknown function 1 31227 31769
YP_009042178.1 NC_024329_p47 sulphite reductase, dissimilatory-type alpha subunit phrog_24411 unknown function unknown function 1 37677 38984
YP_009042143.1 NC_024329_p12 DNA-directed RNA polymerase, phage-type phrog_36028 RNA polymerase DNA, RNA and nucleotide metabolism -1 6972 7934
YP_009042152.1 NC_024329_p21 ribonucleotide reductase, large subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 14232 15965
YP_009042140.1 NC_024329_p9 hypothetical protein phrog_23028 unknown function unknown function 1 5095 5265
YP_009042134.1 NC_024329_p3 hypothetical protein phrog_20597 unknown function unknown function 1 3072 3299
YP_009042133.1 NC_024329_p2 hypothetical protein phrog_26366 unknown function unknown function 1 2204 2344
YP_009042153.1 NC_024329_p22 hypothetical protein phrog_24462 unknown function unknown function 1 16061 16318
YP_009042161.1 NC_024329_p30 FmdB family transcriptional regulator phrog_1076 FmdB-like transcriptional regulator transcription regulation 1 18575 18754
YP_009042172.1 NC_024329_p41 hypothetical protein phrog_26926 unknown function unknown function 1 30299 30640
YP_009042165.1 NC_024329_p34 hypothetical protein phrog_24533 unknown function unknown function 1 20956 21159
YP_009042151.1 NC_024329_p20 hypothetical protein phrog_799 DNA methyltransferase other 1 13711 14235
YP_009042146.1 NC_024329_p15 hypothetical protein phrog_2340 endonuclease DNA, RNA and nucleotide metabolism 1 10882 11259
YP_009042148.1 NC_024329_p17 endodeoxyribonuclease phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 12193 12585
YP_009042150.1 NC_024329_p19 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 12797 13543
YP_009042173.1 NC_024329_p42 hypothetical protein phrog_19883 unknown function unknown function 1 30637 30960
YP_009042171.1 NC_024329_p40 phage fiber protein phrog_24456 tail fiber protein tail 1 27354 30299
YP_009042164.1 NC_024329_p33 hypothetical protein phrog_25618 unknown function unknown function 1 20788 20952
YP_009042177.1 NC_024329_p46 hypothetical protein phrog_22060 unknown function unknown function 1 34140 37664
YP_009042147.1 NC_024329_p16 DNA-directed DNA polymerase phrog_15971 DNA polymerase I DNA, RNA and nucleotide metabolism 1 11252 12193
YP_009042158.1 NC_024329_p27 sulfur transfer protein, DsrC phrog_17249 unknown function unknown function 1 17374 17664
YP_009042162.1 NC_024329_p31 N6 adenine-specific DNA methyltransferase, N12 class phrog_56 DNA methyltransferase other 1 18751 19701
YP_009042159.1 NC_024329_p28 hypothetical protein phrog_25755 unknown function unknown function 1 17680 17955
YP_009042179.1 NC_024329_p48 hypothetical protein phrog_891 terminase small subunit head and packaging 1 39075 39302
YP_009042136.1 NC_024329_p5 hypothetical protein phrog_27348 unknown function unknown function 1 3965 4162
YP_009042166.1 NC_024329_p35 phage head-to-tail joining protein, podovirus-type phrog_449 head-tail adaptor connector 1 21170 22657
YP_009042138.1 NC_024329_p7 hypothetical protein phrog_25600 unknown function unknown function 1 4419 4784
YP_009042176.1 NC_024329_p45 hypothetical protein phrog_25560 unknown function unknown function 1 31741 34044
YP_009042160.1 NC_024329_p29 thymidylate synthase ThyX phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 17952 18575
YP_009042145.1 NC_024329_p14 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 9170 10840
YP_009042168.1 NC_024329_p37 phage capsid protein phrog_267 major head protein head and packaging 1 23621 24499
YP_009042155.1 NC_024329_p24 hypothetical protein phrog_19180 unknown function unknown function 1 16763 17080
YP_009042137.1 NC_024329_p6 hypothetical protein phrog_24297 unknown function unknown function 1 4200 4376
YP_009042144.1 NC_024329_p13 phage ssDNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 8487 9146
YP_009042132.1 NC_024329_p1 maturase, NTPase containing phrog_38 terminase large subunit head and packaging 1 1 1686
YP_009042163.1 NC_024329_p32 ribonucleotide reductase, small subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 19789 20766
YP_009042142.1 NC_024329_p11 DNA-directed RNA polymerase, phage-type phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism -1 5455 6858
YP_009042170.1 NC_024329_p39 phage tail protein phrog_457 tail protein tail 1 25156 27357
YP_009042174.1 NC_024329_p43 hypothetical protein phrog_25445 unknown function unknown function 1 30964 31224
YP_009042156.1 NC_024329_p25 hypothetical protein phrog_24606 unknown function unknown function 1 17091 17189
YP_009042157.1 NC_024329_p26 hypothetical protein phrog_24559 unknown function unknown function 1 17149 17361
YP_009042139.1 NC_024329_p8 hypothetical protein phrog_24497 unknown function unknown function 1 4813 5007
YP_009042154.1 NC_024329_p23 hypothetical protein phrog_22976 unknown function unknown function 1 16489 16758
YP_009042169.1 NC_024329_p38 phage tail protein phrog_446 tail protein tail 1 24573 25145
YP_009042135.1 NC_024329_p4 N6 adenine-specific DNA methyltransferase, N12 class phrog_799 DNA methyltransferase other 1 3348 3920
YP_009042141.1 NC_024329_p10 hypothetical protein phrog_22301 unknown function unknown function 1 5258 5458
YP_009042167.1 NC_024329_p36 phage capsid assembly protein phrog_1052 head assembly head and packaging 1 22727 23509