| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024330 |
Definition |
Pseudomonas phage JD024, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus; unclassified Casadabanvirus. |
DB of origin |
REFSEQ |
Length |
37380 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
64.15 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009042235.1 | NC_024330_p56 | hypothetical protein | phrog_2432 | unknown function | unknown function | 1 | 35616 | 35903 |
| YP_009042197.1 | NC_024330_p18 | hypothetical protein | phrog_286 | unknown function | unknown function | 1 | 8666 | 9067 |
| YP_009042186.1 | NC_024330_p7 | hypothetical protein | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 4879 | 5526 |
| YP_009042211.1 | NC_024330_p32 | hypothetical protein | phrog_19304 | unknown function | unknown function | 1 | 17474 | 17764 |
| YP_009042232.1 | NC_024330_p53 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 32059 | 32277 |
| YP_009042218.1 | NC_024330_p39 | hypothetical protein | phrog_7976 | unknown function | unknown function | 1 | 20820 | 21134 |
| YP_009042180.1 | NC_024330_p1 | repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 168 | 881 |
| YP_009042228.1 | NC_024330_p49 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 28377 | 29300 |
| YP_009042230.1 | NC_024330_p51 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 30993 | 31814 |
| YP_009042205.1 | NC_024330_p26 | hypothetical protein | phrog_1103 | unknown function | unknown function | 1 | 11541 | 11729 |
| YP_009042185.1 | NC_024330_p6 | DNA transposition protein | phrog_296 | DNA transposition protein | integration and excision | 1 | 4130 | 4882 |
| YP_009042227.1 | NC_024330_p48 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 27419 | 28375 |
| YP_009042187.1 | NC_024330_p8 | hypothetical protein | phrog_3765 | unknown function | unknown function | 1 | 5511 | 5627 |
| YP_009042231.1 | NC_024330_p52 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 31823 | 32062 |
| YP_009042182.1 | NC_024330_p3 | hypothetical protein | phrog_2345 | transcriptional regulator | transcription regulation | 1 | 1410 | 1844 |
| YP_009042208.1 | NC_024330_p29 | hypothetical protein | phrog_113 | portal protein | head and packaging | 1 | 14022 | 15608 |
| YP_009042196.1 | NC_024330_p17 | hypothetical protein | phrog_4093 | unknown function | unknown function | 1 | 8373 | 8669 |
| YP_009042222.1 | NC_024330_p43 | hypothetical protein | phrog_3129 | unknown function | unknown function | 1 | 22250 | 22429 |
| YP_009042219.1 | NC_024330_p40 | hypothetical protein | phrog_3376 | unknown function | unknown function | 1 | 21197 | 21373 |
| YP_009042207.1 | NC_024330_p28 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | 1 | 12235 | 14010 |
| YP_009042201.1 | NC_024330_p22 | capsid and scaffold protein | phrog_873 | endolysin | head and packaging | 1 | 10374 | 10790 |
| YP_009042206.1 | NC_024330_p27 | DNA-binding protein | phrog_756 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 11738 | 12238 |
| YP_009042233.1 | NC_024330_p54 | hypothetical protein | phrog_1101 | tail protein | tail | 1 | 32267 | 34474 |
| YP_009042226.1 | NC_024330_p47 | tail length tape-measure protein 1 | phrog_24 | tail length tape measure protein | tail | 1 | 23852 | 27412 |
| YP_009042203.1 | NC_024330_p24 | hypothetical protein | phrog_2975 | Rz-like spanin | lysis | 1 | 11029 | 11430 |
| YP_009042213.1 | NC_024330_p34 | hypothetical protein | phrog_3865 | unknown function | unknown function | 1 | 17915 | 18139 |
| YP_009042199.1 | NC_024330_p20 | hypothetical protein | phrog_3648 | unknown function | unknown function | 1 | 9612 | 9959 |
| YP_009042221.1 | NC_024330_p42 | hypothetical protein | phrog_209 | portal protein | head and packaging | 1 | 21783 | 22262 |
| YP_009042236.1 | NC_024330_p57 | hypothetical protein | phrog_1384 | Mom-like DNA modification protein | other | 1 | 36203 | 36973 |
| YP_009042204.1 | NC_024330_p25 | hypothetical protein | phrog_8661 | unknown function | unknown function | 1 | 11423 | 11536 |
| YP_009042212.1 | NC_024330_p33 | hypothetical protein | phrog_17406 | unknown function | unknown function | 1 | 17770 | 17928 |
| YP_009042220.1 | NC_024330_p41 | hypothetical protein | phrog_195 | head-tail adaptor | connector | 1 | 21370 | 21786 |
| YP_009042191.1 | NC_024330_p12 | inhibition of exonuclease digestion of Mu DNA | phrog_6755 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 6851 | 7228 |
| YP_009042202.1 | NC_024330_p23 | hypothetical protein | phrog_4057 | unknown function | unknown function | 1 | 10790 | 11032 |
| YP_009042209.1 | NC_024330_p30 | virion morphogenesis protein | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 15608 | 16894 |
| YP_009042237.1 | NC_024330_p58 | hypothetical protein | phrog_2623 | unknown function | unknown function | 1 | 37116 | 37295 |
| YP_009042229.1 | NC_024330_p50 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 29300 | 31003 |
| YP_009042184.1 | NC_024330_p5 | A transposase | phrog_310 | transposase | integration and excision | 1 | 2121 | 4115 |
| YP_009042194.1 | NC_024330_p15 | hypothetical protein | phrog_3223 | unknown function | unknown function | 1 | 7824 | 8030 |
| YP_009042214.1 | NC_024330_p35 | hypothetical protein | phrog_10291 | unknown function | unknown function | -1 | 18235 | 18351 |
| YP_009042189.1 | NC_024330_p10 | hypothetical protein | phrog_2043 | unknown function | unknown function | 1 | 6021 | 6314 |
| YP_009042188.1 | NC_024330_p9 | hypothetical protein | phrog_2119 | unknown function | unknown function | 1 | 5627 | 6040 |
| YP_009042225.1 | NC_024330_p46 | hypothetical protein | phrog_10839 | unknown function | unknown function | 1 | 23721 | 23849 |
| YP_009042217.1 | NC_024330_p38 | major capsid protein | phrog_371 | major head protein | head and packaging | 1 | 19900 | 20808 |
| YP_009042198.1 | NC_024330_p19 | integral membrane protein | phrog_836 | late transcriptional activator | transcription regulation | 1 | 9099 | 9509 |
| YP_009042234.1 | NC_024330_p55 | hypothetical protein | phrog_2875 | virion structural protein | head and packaging | 1 | 34471 | 35619 |
| YP_009042223.1 | NC_024330_p44 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 22462 | 23232 |
| YP_009042215.1 | NC_024330_p36 | hypothetical protein | phrog_328 | head maturation protease | head and packaging | 1 | 18358 | 19464 |
| YP_009042193.1 | NC_024330_p14 | hypothetical protein | phrog_1518 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 7541 | 7822 |
| YP_009042190.1 | NC_024330_p11 | host-nuclease inhibitor protein | phrog_491 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 6331 | 6849 |
| YP_009042210.1 | NC_024330_p31 | capsid and scaffold protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 16894 | 17361 |
| YP_009042224.1 | NC_024330_p45 | hypothetical protein | phrog_1442 | tail assembly chaperone | tail | 1 | 23236 | 23721 |
| YP_009042181.1 | NC_024330_p2 | DNA-binding protein | phrog_769 | transcriptional repressor | transcription regulation | 1 | 1051 | 1407 |
| YP_009042192.1 | NC_024330_p13 | hypothetical protein | phrog_4367 | unknown function | unknown function | 1 | 7230 | 7538 |
| YP_009042195.1 | NC_024330_p16 | hypothetical protein | phrog_3652 | unknown function | unknown function | 1 | 8033 | 8302 |
| YP_009042183.1 | NC_024330_p4 | hypothetical protein | phrog_4468 | unknown function | unknown function | 1 | 1844 | 2053 |
| YP_009042200.1 | NC_024330_p21 | hypothetical protein | phrog_1024 | unknown function | unknown function | 1 | 9952 | 10374 |
| YP_009042216.1 | NC_024330_p37 | hypothetical protein | phrog_1731 | virion structural protein | head and packaging | 1 | 19474 | 19872 |