Genomic map of Pseudomonas phage JD024 (NC_024330)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024330
Definition
Pseudomonas phage JD024, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus; unclassified Casadabanvirus.
DB of origin
REFSEQ
Length
37380
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
58
%GC
64.15
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009042235.1 NC_024330_p56 hypothetical protein phrog_2432 unknown function unknown function 1 35616 35903
YP_009042197.1 NC_024330_p18 hypothetical protein phrog_286 unknown function unknown function 1 8666 9067
YP_009042186.1 NC_024330_p7 hypothetical protein phrog_2030 transcriptional regulator transcription regulation 1 4879 5526
YP_009042211.1 NC_024330_p32 hypothetical protein phrog_19304 unknown function unknown function 1 17474 17764
YP_009042232.1 NC_024330_p53 hypothetical protein phrog_1196 tail assembly chaperone tail 1 32059 32277
YP_009042218.1 NC_024330_p39 hypothetical protein phrog_7976 unknown function unknown function 1 20820 21134
YP_009042180.1 NC_024330_p1 repressor phrog_4 transcriptional repressor transcription regulation -1 168 881
YP_009042228.1 NC_024330_p49 hypothetical protein phrog_687 structural protein head and packaging 1 28377 29300
YP_009042230.1 NC_024330_p51 hypothetical protein phrog_778 tail assembly protein tail 1 30993 31814
YP_009042205.1 NC_024330_p26 hypothetical protein phrog_1103 unknown function unknown function 1 11541 11729
YP_009042185.1 NC_024330_p6 DNA transposition protein phrog_296 DNA transposition protein integration and excision 1 4130 4882
YP_009042227.1 NC_024330_p48 hypothetical protein phrog_687 structural protein head and packaging 1 27419 28375
YP_009042187.1 NC_024330_p8 hypothetical protein phrog_3765 unknown function unknown function 1 5511 5627
YP_009042231.1 NC_024330_p52 hypothetical protein phrog_1180 tail assembly chaperone tail 1 31823 32062
YP_009042182.1 NC_024330_p3 hypothetical protein phrog_2345 transcriptional regulator transcription regulation 1 1410 1844
YP_009042208.1 NC_024330_p29 hypothetical protein phrog_113 portal protein head and packaging 1 14022 15608
YP_009042196.1 NC_024330_p17 hypothetical protein phrog_4093 unknown function unknown function 1 8373 8669
YP_009042222.1 NC_024330_p43 hypothetical protein phrog_3129 unknown function unknown function 1 22250 22429
YP_009042219.1 NC_024330_p40 hypothetical protein phrog_3376 unknown function unknown function 1 21197 21373
YP_009042207.1 NC_024330_p28 hypothetical protein phrog_38 terminase large subunit head and packaging 1 12235 14010
YP_009042201.1 NC_024330_p22 capsid and scaffold protein phrog_873 endolysin head and packaging 1 10374 10790
YP_009042206.1 NC_024330_p27 DNA-binding protein phrog_756 DNA binding protein DNA, RNA and nucleotide metabolism 1 11738 12238
YP_009042233.1 NC_024330_p54 hypothetical protein phrog_1101 tail protein tail 1 32267 34474
YP_009042226.1 NC_024330_p47 tail length tape-measure protein 1 phrog_24 tail length tape measure protein tail 1 23852 27412
YP_009042203.1 NC_024330_p24 hypothetical protein phrog_2975 Rz-like spanin lysis 1 11029 11430
YP_009042213.1 NC_024330_p34 hypothetical protein phrog_3865 unknown function unknown function 1 17915 18139
YP_009042199.1 NC_024330_p20 hypothetical protein phrog_3648 unknown function unknown function 1 9612 9959
YP_009042221.1 NC_024330_p42 hypothetical protein phrog_209 portal protein head and packaging 1 21783 22262
YP_009042236.1 NC_024330_p57 hypothetical protein phrog_1384 Mom-like DNA modification protein other 1 36203 36973
YP_009042204.1 NC_024330_p25 hypothetical protein phrog_8661 unknown function unknown function 1 11423 11536
YP_009042212.1 NC_024330_p33 hypothetical protein phrog_17406 unknown function unknown function 1 17770 17928
YP_009042220.1 NC_024330_p41 hypothetical protein phrog_195 head-tail adaptor connector 1 21370 21786
YP_009042191.1 NC_024330_p12 inhibition of exonuclease digestion of Mu DNA phrog_6755 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 6851 7228
YP_009042202.1 NC_024330_p23 hypothetical protein phrog_4057 unknown function unknown function 1 10790 11032
YP_009042209.1 NC_024330_p30 virion morphogenesis protein phrog_220 minor head protein and DNA pilot head and packaging 1 15608 16894
YP_009042237.1 NC_024330_p58 hypothetical protein phrog_2623 unknown function unknown function 1 37116 37295
YP_009042229.1 NC_024330_p50 hypothetical protein phrog_1082 tail assembly protein tail 1 29300 31003
YP_009042184.1 NC_024330_p5 A transposase phrog_310 transposase integration and excision 1 2121 4115
YP_009042194.1 NC_024330_p15 hypothetical protein phrog_3223 unknown function unknown function 1 7824 8030
YP_009042214.1 NC_024330_p35 hypothetical protein phrog_10291 unknown function unknown function -1 18235 18351
YP_009042189.1 NC_024330_p10 hypothetical protein phrog_2043 unknown function unknown function 1 6021 6314
YP_009042188.1 NC_024330_p9 hypothetical protein phrog_2119 unknown function unknown function 1 5627 6040
YP_009042225.1 NC_024330_p46 hypothetical protein phrog_10839 unknown function unknown function 1 23721 23849
YP_009042217.1 NC_024330_p38 major capsid protein phrog_371 major head protein head and packaging 1 19900 20808
YP_009042198.1 NC_024330_p19 integral membrane protein phrog_836 late transcriptional activator transcription regulation 1 9099 9509
YP_009042234.1 NC_024330_p55 hypothetical protein phrog_2875 virion structural protein head and packaging 1 34471 35619
YP_009042223.1 NC_024330_p44 hypothetical protein phrog_807 major tail protein with Ig-like domain tail 1 22462 23232
YP_009042215.1 NC_024330_p36 hypothetical protein phrog_328 head maturation protease head and packaging 1 18358 19464
YP_009042193.1 NC_024330_p14 hypothetical protein phrog_1518 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 7541 7822
YP_009042190.1 NC_024330_p11 host-nuclease inhibitor protein phrog_491 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 6331 6849
YP_009042210.1 NC_024330_p31 capsid and scaffold protein phrog_26 tail completion or Neck1 protein connector 1 16894 17361
YP_009042224.1 NC_024330_p45 hypothetical protein phrog_1442 tail assembly chaperone tail 1 23236 23721
YP_009042181.1 NC_024330_p2 DNA-binding protein phrog_769 transcriptional repressor transcription regulation 1 1051 1407
YP_009042192.1 NC_024330_p13 hypothetical protein phrog_4367 unknown function unknown function 1 7230 7538
YP_009042195.1 NC_024330_p16 hypothetical protein phrog_3652 unknown function unknown function 1 8033 8302
YP_009042183.1 NC_024330_p4 hypothetical protein phrog_4468 unknown function unknown function 1 1844 2053
YP_009042200.1 NC_024330_p21 hypothetical protein phrog_1024 unknown function unknown function 1 9952 10374
YP_009042216.1 NC_024330_p37 hypothetical protein phrog_1731 virion structural protein head and packaging 1 19474 19872