Genomic map of Staphylococcus phage 6ec (NC_024355)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024355
Definition
Staphylococcus phage 6ec, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Sextaecvirus.
DB of origin
REFSEQ
Length
93794
Host Name
Staphylococcus epidermidis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
142
%GC
29.29
Number of singletons
20
Number of paralogs
4

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009042538.1 NC_024355_p32 tail assembly chaperone phrog_187 head-tail adaptor connector 1 19535 19879
YP_009042640.1 NC_024355_p134 hypothetical protein phrog_11080 unknown function unknown function 1 89649 90011
YP_009042520.1 NC_024355_p14 hypothetical protein phrog_9700 unknown function unknown function 1 5667 5792
YP_009042544.1 NC_024355_p38 minor tail protein phrog_326 tail protein with endopeptidase domain other 1 29469 31025
YP_009042635.1 NC_024355_p129 hypothetical protein phrog_14210 unknown function unknown function 1 87548 87799
YP_009042529.1 NC_024355_p23 assembly protease phrog_36211 head maturation protease head and packaging 1 14501 15637
YP_009042580.1 NC_024355_p74 hypothetical protein phrog_24593 unknown function unknown function -1 49710 50855
YP_009042599.1 NC_024355_p93 hypothetical protein phrog_2376 ATPase other -1 64358 65467
YP_009042572.1 NC_024355_p66 hypothetical protein phrog_987 unknown function unknown function -1 47247 47447
YP_009042553.1 NC_024355_p47 hypothetical protein phrog_2990 unknown function unknown function 1 37895 38350
YP_009042515.1 NC_024355_p9 hypothetical protein phrog_37538 unknown function unknown function -1 2465 2929
YP_009042620.1 NC_024355_p114 hypothetical protein phrog_467 unknown function unknown function -1 78313 78720
YP_009042633.1 NC_024355_p127 HNH endonuclease domain protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 84999 85511
YP_009042545.1 NC_024355_p39 minor tail protein phrog_13912 minor tail protein tail 1 31018 31647
YP_009042630.1 NC_024355_p124 hypothetical protein phrog_2367 unknown function unknown function -1 82468 83502
YP_009042517.1 NC_024355_p11 hypothetical protein phrog_29358 unknown function unknown function -1 3302 3619
YP_009042632.1 NC_024355_p126 hypothetical protein phrog_5767 sigma factor transcription regulation -1 83812 84795
YP_009042624.1 NC_024355_p118 hypothetical protein phrog_98 unknown function unknown function -1 79578 80033
YP_009042576.1 NC_024355_p70 hypothetical protein singleton unknown function unknown function -1 48377 48652
YP_009042626.1 NC_024355_p120 hypothetical protein phrog_32564 unknown function unknown function -1 80470 80700
YP_009042573.1 NC_024355_p67 hypothetical protein singleton unknown function unknown function -1 47454 47621
YP_009042574.1 NC_024355_p68 hypothetical protein singleton unknown function unknown function -1 47637 47924
YP_009042523.1 NC_024355_p17 RNA binding protein phrog_850 RNA-binding protein DNA, RNA and nucleotide metabolism 1 6811 8319
YP_009042571.1 NC_024355_p65 hypothetical protein phrog_98 unknown function unknown function -1 46740 47222
YP_009042610.1 NC_024355_p104 hypothetical protein phrog_28330 unknown function unknown function -1 72539 72946
YP_009042590.1 NC_024355_p84 hypothetical protein singleton unknown function unknown function -1 60355 60933
YP_009042595.1 NC_024355_p89 hypothetical protein singleton unknown function unknown function -1 62597 62776
YP_009042601.1 NC_024355_p95 hypothetical protein phrog_2484 RecJ-like ssDNA exonuclease DNA, RNA and nucleotide metabolism -1 65980 67719
YP_009042558.1 NC_024355_p52 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 40456 41004
YP_009042509.1 NC_024355_p3 hypothetical protein phrog_33067 unknown function unknown function -1 744 896
YP_009042524.1 NC_024355_p18 ABC transport-like domain protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 8538 9752
YP_009042584.1 NC_024355_p78 hypothetical protein phrog_8902 unknown function unknown function -1 52416 53081
YP_009042547.1 NC_024355_p41 minor tail protein phrog_257 minor tail protein tail 1 34338 36071
YP_009042634.1 NC_024355_p128 hypothetical protein singleton unknown function unknown function -1 86191 86637
YP_009042561.1 NC_024355_p55 hypothetical protein phrog_31926 unknown function unknown function -1 43330 43650
YP_009042568.1 NC_024355_p62 hypothetical protein phrog_7235 unknown function unknown function -1 45554 45754
YP_009042586.1 NC_024355_p80 DNA polymerase phrog_405 DNA polymerase DNA, RNA and nucleotide metabolism -1 53431 58398
YP_009042621.1 NC_024355_p115 hypothetical protein singleton unknown function unknown function -1 78974 79150
YP_009042628.1 NC_024355_p122 hypothetical protein phrog_37771 unknown function unknown function -1 81913 82176
YP_009042604.1 NC_024355_p98 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 69265 70902
YP_009042560.1 NC_024355_p54 integrase phrog_1 integrase integration and excision 1 42313 43293
YP_009042591.1 NC_024355_p85 hypothetical protein phrog_1817 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism -1 61014 61628
YP_009042525.1 NC_024355_p19 terminase large subunit phrog_4914 terminase large subunit head and packaging 1 10343 10960
YP_009042639.1 NC_024355_p133 hypothetical protein singleton unknown function unknown function 1 89119 89646
YP_009042646.1 NC_024355_p140 hypothetical protein singleton unknown function unknown function 1 91613 91771
YP_009042585.1 NC_024355_p79 hypothetical protein phrog_28525 unknown function unknown function -1 53098 53367
YP_009042569.1 NC_024355_p63 hypothetical protein phrog_1486 membrane protein moron, auxiliary metabolic gene and host takeover -1 45832 46227
YP_009042528.1 NC_024355_p22 portal protein phrog_12 portal protein head and packaging 1 13000 14475
YP_009042623.1 NC_024355_p117 hypothetical protein singleton unknown function unknown function -1 79320 79577
YP_009042549.1 NC_024355_p43 hypothetical protein phrog_134 unknown function unknown function 1 36513 36665
YP_009042530.1 NC_024355_p24 capsid protein phrog_10 major head protein head and packaging 1 15640 16800
YP_009042612.1 NC_024355_p106 hypothetical protein phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 73574 74533
YP_009042642.1 NC_024355_p136 hypothetical protein phrog_28403 unknown function unknown function 1 90724 90822
YP_009042641.1 NC_024355_p135 hypothetical protein singleton unknown function unknown function 1 90340 90642
YP_009042508.1 NC_024355_p2 hypothetical protein phrog_30342 unknown function unknown function -1 406 732
YP_009042512.1 NC_024355_p6 hypothetical protein phrog_278 transcriptional regulator transcription regulation -1 1689 1841
YP_009042570.1 NC_024355_p64 hypothetical protein phrog_25651 membrane protein moron, auxiliary metabolic gene and host takeover -1 46238 46738
YP_009042602.1 NC_024355_p96 hypothetical protein phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 67731 68192
YP_009042643.1 NC_024355_p137 hypothetical protein singleton unknown function unknown function 1 90837 91079
YP_009042513.1 NC_024355_p7 hypothetical protein phrog_32844 unknown function unknown function -1 1838 2071
YP_009042627.1 NC_024355_p121 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 80816 81859
YP_009042564.1 NC_024355_p58 hypothetical protein phrog_38859 unknown function unknown function -1 44116 44370
YP_009042596.1 NC_024355_p90 hypothetical protein phrog_170 PhoH-like phosphate starvation-inducible other -1 62767 63522
YP_009042519.1 NC_024355_p13 hypothetical protein phrog_32286 unknown function unknown function -1 4041 4742
YP_009042543.1 NC_024355_p37 minor tail protein phrog_33 distal tail protein Dit tail 1 28619 29455
YP_009042507.1 NC_024355_p1 hypothetical protein phrog_18594 unknown function unknown function -1 182 394
YP_009042551.1 NC_024355_p45 hydrolase domain protein phrog_29134 tail protein tail 1 36885 37460
YP_009042619.1 NC_024355_p113 hypothetical protein phrog_27263 unknown function unknown function -1 77972 78313
YP_009042637.1 NC_024355_p131 hypothetical protein singleton unknown function unknown function 1 88635 88790
YP_009042541.1 NC_024355_p35 HNH endonuclease domain protein phrog_5104 unknown function unknown function 1 21778 22521
YP_009042582.1 NC_024355_p76 hypothetical protein phrog_200 lipoprotein other -1 51332 52126
YP_009042533.1 NC_024355_p27 head-tail adaptor phrog_25 head closure Hc1 connector 1 17596 17931
YP_009042526.1 NC_024355_p20 endodeoxyribonuclease phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism 1 11034 11705
YP_009042593.1 NC_024355_p87 methyltransferase phrog_3008 DNA methyltransferase other -1 61915 62280
YP_009042537.1 NC_024355_p31 tail assembly chaperone phrog_187 head-tail adaptor connector 1 19535 20118
YP_009042532.1 NC_024355_p26 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 17089 17592
YP_009042606.1 NC_024355_p100 hypothetical protein phrog_4680 unknown function unknown function -1 71306 71788
YP_009042542.1 NC_024355_p36 tapemeasure phrog_167 tail length tape measure protein tail 1 22723 28605
YP_009042577.1 NC_024355_p71 hypothetical protein phrog_10928 unknown function unknown function -1 48677 48913
YP_009042531.1 NC_024355_p25 hypothetical protein phrog_28627 unknown function unknown function 1 16868 17092
YP_009042631.1 NC_024355_p125 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 83560 83796
YP_009042616.1 NC_024355_p110 hypothetical protein phrog_28008 unknown function unknown function -1 77299 77472
YP_009042636.1 NC_024355_p130 hypothetical protein phrog_10310 unknown function unknown function 1 87876 88421
YP_009042536.1 NC_024355_p30 major tail protein phrog_88 major tail protein tail 1 18757 19425
YP_009042615.1 NC_024355_p109 hypothetical protein phrog_1709 unknown function unknown function -1 77078 77311
YP_009042521.2 NC_024355_p15 HNH endonuclease domain protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 5782 6183
YP_009042546.1 NC_024355_p40 pre-neck appendage phrog_4775 pre-neck appendage protein connector 1 31666 34338
YP_009042603.1 NC_024355_p97 hypothetical protein phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 68207 69253
YP_009042583.2 NC_024355_p77 hypothetical protein phrog_22697 membrane protein moron, auxiliary metabolic gene and host takeover -1 52129 52404
YP_009042608.1 NC_024355_p102 hypothetical protein phrog_36894 unknown function unknown function -1 72078 72332
YP_009042598.1 NC_024355_p92 hypothetical protein phrog_33374 unknown function unknown function -1 64070 64309
YP_009042617.1 NC_024355_p111 hypothetical protein singleton unknown function unknown function -1 77465 77626
YP_009042527.1 NC_024355_p21 terminase large subunit phrog_2699 terminase large subunit head and packaging 1 11883 12986
YP_009042609.1 NC_024355_p103 hypothetical protein phrog_37816 unknown function unknown function -1 72373 72522
YP_009042607.1 NC_024355_p101 hypothetical protein phrog_4743 unknown function unknown function -1 71879 72076
YP_009042556.1 NC_024355_p50 hypothetical protein phrog_36345 unknown function unknown function 1 39455 39568
YP_009042552.1 NC_024355_p46 hypothetical protein phrog_2968 tail protein tail 1 37485 37922
YP_009042647.1 NC_024355_p141 hypothetical protein phrog_10311 unknown function unknown function 1 91788 92057
YP_009042645.1 NC_024355_p139 hypothetical protein phrog_4264 unknown function unknown function 1 91353 91610
YP_009042566.1 NC_024355_p60 hypothetical protein phrog_1815 guanylate kinase other -1 44640 45173
YP_009042555.1 NC_024355_p49 hypothetical protein phrog_2981 unknown function unknown function 1 38915 39439
YP_009042638.1 NC_024355_p132 hypothetical protein phrog_4534 unknown function unknown function 1 88806 89102
YP_009042575.1 NC_024355_p69 hypothetical protein phrog_19507 membrane protein moron, auxiliary metabolic gene and host takeover -1 47925 48344
YP_009042567.1 NC_024355_p61 hypothetical protein phrog_18936 membrane protein moron, auxiliary metabolic gene and host takeover -1 45188 45535
YP_009042618.1 NC_024355_p112 hypothetical protein singleton unknown function unknown function -1 77616 77951
YP_009042518.1 NC_024355_p12 hypothetical protein phrog_19545 unknown function unknown function -1 3661 3984
YP_009042594.1 NC_024355_p88 methyltransferase singleton unknown function unknown function -1 62187 62582
YP_009042565.1 NC_024355_p59 hypothetical protein phrog_38853 unknown function unknown function -1 44358 44636
YP_009042550.1 NC_024355_p44 hypothetical protein phrog_32206 unknown function unknown function 1 36677 36880
YP_009042588.1 NC_024355_p82 hypothetical protein phrog_2642 unknown function unknown function -1 58807 59391
YP_009042644.1 NC_024355_p138 hypothetical protein phrog_3325 TreN-like membrane protein other 1 91094 91240
YP_009042613.1 NC_024355_p107 NrdE phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 74550 76640
YP_009042648.1 NC_024355_p142 hypothetical protein phrog_31961 unknown function unknown function 1 92061 92360
YP_009042539.1 NC_024355_p33 hypothetical protein phrog_36133 unknown function unknown function -1 20216 20437
YP_009042559.1 NC_024355_p53 endolysin phrog_833 endolysin lysis 1 41548 42177
YP_009042579.1 NC_024355_p73 hypothetical protein singleton unknown function unknown function -1 49552 49653
YP_009042605.1 NC_024355_p99 hypothetical protein singleton unknown function unknown function -1 70902 71303
YP_009042592.1 NC_024355_p86 hypothetical protein phrog_3093 unknown function unknown function -1 61642 61902
YP_009042600.1 NC_024355_p94 hypothetical protein singleton unknown function unknown function -1 65552 65980
YP_009042554.1 NC_024355_p48 holin phrog_962 holin lysis 1 38372 38851
YP_009042589.1 NC_024355_p83 hypothetical protein phrog_32016 unknown function unknown function -1 59454 60242
YP_009042534.1 NC_024355_p28 head-tail joining protein phrog_5 tail completion or Neck1 protein connector 1 17931 18347
YP_009042535.1 NC_024355_p29 head-tail joining protein phrog_1217 tail protein tail 1 18344 18733
YP_009042581.1 NC_024355_p75 hypothetical protein phrog_9163 unknown function unknown function -1 50874 51218
YP_009042562.1 NC_024355_p56 hypothetical protein phrog_38061 unknown function unknown function -1 43651 43881
YP_009042614.1 NC_024355_p108 hypothetical protein phrog_883 flavodoxin moron, auxiliary metabolic gene and host takeover -1 76633 76995
YP_009042578.1 NC_024355_p72 hypothetical protein phrog_16124 unknown function unknown function -1 48943 49452
YP_009042540.1 NC_024355_p34 minor tail protein phrog_13339 tail length tape measure protein tail 1 20536 21756
YP_009042629.1 NC_024355_p123 hypothetical protein phrog_31402 unknown function unknown function -1 82199 82423
YP_009042611.1 NC_024355_p105 hypothetical protein phrog_36705 unknown function unknown function -1 72933 73499
YP_009042511.1 NC_024355_p5 hypothetical protein phrog_37092 unknown function unknown function -1 1494 1685
YP_009042514.1 NC_024355_p8 nuclease phrog_452 endonuclease DNA, RNA and nucleotide metabolism -1 2098 2451
YP_009042548.1 NC_024355_p42 hypothetical protein phrog_1766 tail fiber protein tail 1 36085 36513
YP_009042522.1 NC_024355_p16 terminase small subunit phrog_83 terminase small subunit head and packaging 1 6202 6711
YP_009042557.1 NC_024355_p51 N-acetylmuramoyl-L-alanine amidase singleton unknown function unknown function 1 40078 40377
YP_009042587.1 NC_024355_p81 hypothetical protein phrog_33466 unknown function unknown function -1 58400 58741
YP_009042510.1 NC_024355_p4 hypothetical protein phrog_31655 unknown function unknown function -1 967 1482
YP_009042622.1 NC_024355_p116 hypothetical protein phrog_2625 unknown function unknown function -1 79160 79333
YP_009042516.1 NC_024355_p10 hypothetical protein phrog_32082 unknown function unknown function -1 2957 3286
YP_009042563.1 NC_024355_p57 hypothetical protein phrog_36798 unknown function unknown function -1 43866 44138
YP_009042625.1 NC_024355_p119 hypothetical protein phrog_467 unknown function unknown function -1 80061 80483
YP_009042597.1 NC_024355_p91 hypothetical protein phrog_34902 Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 63519 63968