Genomic map of Enterococcus phage IME-EFm1 (NC_024356)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024356
Definition
Enterococcus phage IME-EFm1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
42597
Host Name
Enterococcus faecalis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
70
%GC
35.18
Number of singletons
10
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009042701.1 NC_024356_p53 hypothetical protein phrog_29604 unknown function unknown function -1 35802 35984
YP_009042675.1 NC_024356_p27 HNH homing endonuclease phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism -1 25109 25507
YP_009042651.1 NC_024356_p3 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1515 3290
YP_009042714.1 NC_024356_p66 hypothetical protein phrog_33050 unknown function unknown function 1 41391 41537
YP_009042696.1 NC_024356_p48 hypothetical protein phrog_35447 unknown function unknown function -1 34573 34770
YP_009042692.1 NC_024356_p44 hypothetical protein phrog_33930 unknown function unknown function -1 32532 32693
YP_009042656.1 NC_024356_p8 head-tail joining protein phrog_40 head-tail adaptor Ad1 connector 1 6623 6892
YP_009042697.1 NC_024356_p49 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 34763 35113
YP_009042700.1 NC_024356_p52 hypothetical protein singleton unknown function unknown function -1 35441 35719
YP_009042690.1 NC_024356_p42 hypothetical protein phrog_34660 unknown function unknown function -1 31507 31707
YP_009042710.1 NC_024356_p62 hypothetical protein phrog_29073 unknown function unknown function -1 38432 38647
YP_009042649.1 NC_024356_p1 hypothetical protein phrog_10805 unknown function unknown function 1 261 443
YP_009042682.1 NC_024356_p34 hypothetical protein phrog_674 unknown function unknown function -1 27935 28744
YP_009042654.1 NC_024356_p6 prohead protease phrog_80 head maturation protease head and packaging 1 4714 5265
YP_009042716.1 NC_024356_p68 hypothetical protein phrog_34938 unknown function unknown function 1 41733 41924
YP_009042658.1 NC_024356_p10 head-tail joining protein singleton unknown function unknown function 1 7206 7526
YP_009042663.1 NC_024356_p15 tail tape measure protein phrog_10613 tail length tape measure protein tail 1 9332 10360
YP_009042652.2 NC_024356_p4 sensor histidine kinase phrog_30514 unknown function unknown function 1 3384 3560
YP_009042681.1 NC_024356_p33 hypothetical protein singleton unknown function unknown function -1 27720 27938
YP_009042666.1 NC_024356_p18 minor tail protein phrog_17633 minor tail protein tail 1 16915 17793
YP_009042673.1 NC_024356_p25 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 22347 22568
YP_009042679.1 NC_024356_p31 hypothetical protein phrog_9882 unknown function unknown function -1 26659 26871
YP_009042707.1 NC_024356_p59 hypothetical protein phrog_1083 unknown function unknown function -1 37438 37764
YP_009042664.1 NC_024356_p16 tail length tape-measure protein phrog_167 tail length tape measure protein tail 1 10420 13644
YP_009042678.1 NC_024356_p30 hypothetical protein singleton unknown function unknown function -1 26292 26624
YP_009042670.1 NC_024356_p22 holin phrog_689 holin lysis 1 20586 20864
YP_009042703.1 NC_024356_p55 hypothetical protein singleton unknown function unknown function -1 36156 36596
YP_009042655.1 NC_024356_p7 capsid protein phrog_10 major head protein head and packaging 1 5335 6546
YP_009042693.1 NC_024356_p45 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 32690 33988
YP_009042661.1 NC_024356_p13 hypothetical protein phrog_187 head-tail adaptor connector 1 8707 9054
YP_009042691.1 NC_024356_p43 DNA replication protein phrog_695 DNA polymerase/primase DNA, RNA and nucleotide metabolism -1 31726 32472
YP_009042650.1 NC_024356_p2 terminase small subunit phrog_83 terminase small subunit head and packaging 1 448 912
YP_009042683.1 NC_024356_p35 hypothetical protein phrog_9701 unknown function unknown function -1 28734 28901
YP_009042713.1 NC_024356_p65 hypothetical protein phrog_31810 unknown function unknown function 1 41191 41394
YP_009042662.1 NC_024356_p14 tail tape measure chaperone protein phrog_5294 unknown function unknown function 1 9059 9265
YP_009042674.1 NC_024356_p26 DNA polymerase phrog_1252 DNA polymerase DNA, RNA and nucleotide metabolism -1 22632 24923
YP_009042653.1 NC_024356_p5 portal protein phrog_12 portal protein head and packaging 1 3564 4769
YP_009042698.1 NC_024356_p50 hypothetical protein phrog_28226 unknown function unknown function -1 35113 35319
YP_009042702.1 NC_024356_p54 hypothetical protein phrog_19168 unknown function unknown function -1 35977 36156
YP_009042694.1 NC_024356_p46 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 33978 34463
YP_009042706.1 NC_024356_p58 hypothetical protein phrog_3671 unknown function unknown function -1 37142 37426
YP_009042715.1 NC_024356_p67 hypothetical protein phrog_8190 unknown function unknown function 1 41539 41721
YP_009042695.1 NC_024356_p47 hypothetical protein phrog_36593 unknown function unknown function -1 34463 34576
YP_009042672.1 NC_024356_p24 N-acetylmuramoyl-L-alanine amidase phrog_3393 endolysin lysis 1 21175 22200
YP_009042657.1 NC_024356_p9 head-tail adaptor protein phrog_25 head closure Hc1 connector 1 6892 7227
YP_009042708.1 NC_024356_p60 hypothetical protein phrog_36002 unknown function unknown function -1 37758 37994
YP_009047123.1 NC_024356_p70 HNH endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 42126 42518
YP_009042668.1 NC_024356_p20 tail assembly protein phrog_30133 virion structural protein head and packaging 1 18352 20166
YP_009042711.1 NC_024356_p63 DNA primase phrog_864 DNA primase DNA, RNA and nucleotide metabolism -1 38650 40329
YP_009042677.1 NC_024356_p29 hypothetical protein phrog_32207 unknown function unknown function -1 25726 26277
YP_009042669.1 NC_024356_p21 hypothetical protein phrog_6227 unknown function unknown function 1 20185 20430
YP_009042665.1 NC_024356_p17 hypothetical protein phrog_202 distal tail protein Dit tail 1 13714 16848
YP_009042659.1 NC_024356_p11 head-tail joining protein phrog_78 tail terminator connector 1 7600 7965
YP_009042660.1 NC_024356_p12 major tail protein phrog_88 major tail protein tail 1 8037 8600
YP_009042687.1 NC_024356_p39 HNH endonuclease family protein phrog_20162 HNH endonuclease DNA, RNA and nucleotide metabolism -1 30170 30436
YP_009042717.1 NC_024356_p69 hypothetical protein phrog_30100 unknown function unknown function 1 41924 42082
YP_009042704.1 NC_024356_p56 hypothetical protein phrog_29476 unknown function unknown function -1 36658 36819
YP_009042689.1 NC_024356_p41 hypothetical protein phrog_4943 unknown function unknown function -1 30891 31370
YP_009042676.1 NC_024356_p28 hypothetical protein phrog_29938 unknown function unknown function -1 25504 25710
YP_009042709.1 NC_024356_p61 hypothetical protein singleton unknown function unknown function -1 38059 38343
YP_009042688.1 NC_024356_p40 HNH homing endonuclease-like protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 30437 30901
YP_009042712.1 NC_024356_p64 hypothetical protein singleton unknown function unknown function -1 40411 40689
YP_009042667.1 NC_024356_p19 hypothetical protein singleton unknown function unknown function 1 17985 18338
YP_009042680.1 NC_024356_p32 hypothetical protein phrog_6479 unknown function unknown function -1 26962 27654
YP_009042671.1 NC_024356_p23 holin phrog_297 holin lysis 1 20877 21158
YP_009042705.1 NC_024356_p57 hypothetical protein phrog_3671 unknown function unknown function -1 36831 37130
YP_009042684.1 NC_024356_p36 hypothetical protein phrog_22674 unknown function unknown function -1 28903 29130
YP_009042686.1 NC_024356_p38 metallo-beta-lactamase domain protein phrog_392 metal-dependent hydrolase other -1 29358 30032
YP_009042685.1 NC_024356_p37 hypothetical protein singleton unknown function unknown function -1 29153 29320
YP_009042699.1 NC_024356_p51 hypothetical protein singleton unknown function unknown function -1 35321 35413