Genomic map of Listeria phage LP-048 (NC_024359)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024359
Definition
Listeria phage LP-048, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Jasinkavirinae; Pecentumvirus; Listeria virus LP048.
DB of origin
REFSEQ
Length
133048
Host Name
Listeria monocytogenes
Host domain
Bacteria
Is prophage?
undef
Number of proteins
177
%GC
35.96
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009042875.1 NC_024359_p67 hypothetical protein phrog_1481 unknown function unknown function -1 34778 35011
YP_009042940.1 NC_024359_p132 nicotinamide phosphoribosyltransferase phrog_448 nicotinamide phosphoribosyl transferase other 1 96710 98494
YP_009042894.1 NC_024359_p86 hypothetical protein phrog_9462 unknown function unknown function 1 48741 49091
YP_009042879.1 NC_024359_p71 hypothetical protein phrog_1063 terminase small subunit head and packaging 1 36171 36587
YP_009042831.1 NC_024359_p23 hypothetical protein phrog_6159 unknown function unknown function 1 9453 9638
YP_009042890.1 NC_024359_p82 portal protein phrog_12 portal protein head and packaging 1 43661 45304
YP_009042820.1 NC_024359_p12 hypothetical protein phrog_9612 unknown function unknown function 1 4547 4819
YP_009042939.1 NC_024359_p131 ribose-phosphate pyrophosphokinase phrog_619 ribose-phosphate pyrophosphokinase other 1 95785 96699
YP_009042864.1 NC_024359_p56 hypothetical protein phrog_990 metal-dependent phosphohydrolase other -1 24643 25074
YP_009042824.1 NC_024359_p16 hypothetical protein phrog_9107 unknown function unknown function 1 6086 6304
YP_009042870.1 NC_024359_p62 hypothetical protein phrog_9386 unknown function unknown function -1 29190 29597
YP_009042929.1 NC_024359_p121 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 88426 89046
YP_009042950.1 NC_024359_p142 hypothetical protein phrog_1089 unknown function unknown function 1 109412 109789
YP_009042835.1 NC_024359_p27 hypothetical protein phrog_11576 unknown function unknown function 1 10810 11106
YP_009042828.1 NC_024359_p20 hypothetical protein phrog_11450 unknown function unknown function 1 7410 8570
YP_009042928.1 NC_024359_p120 hypothetical protein phrog_1095 unknown function unknown function 1 88001 88423
YP_009042877.1 NC_024359_p69 hypothetical protein phrog_3395 membrane protein moron, auxiliary metabolic gene and host takeover 1 35523 35909
YP_009042816.1 NC_024359_p8 hypothetical protein phrog_9566 unknown function unknown function 1 3010 3267
YP_009042981.1 NC_024359_p173 hypothetical protein phrog_10369 unknown function unknown function 1 129852 130001
YP_009042867.1 NC_024359_p59 DUF2828 domain-containing protein phrog_850 RNA-binding protein DNA, RNA and nucleotide metabolism -1 25669 27189
YP_009042857.1 NC_024359_p49 RNA ligase phrog_548 RNA ligase DNA, RNA and nucleotide metabolism -1 20626 21567
YP_009042886.1 NC_024359_p78 N-acetylmuramoyl-L-alanine amidase phrog_5182 endolysin lysis 1 40943 41968
YP_009042967.1 NC_024359_p159 hypothetical protein phrog_7005 unknown function unknown function 1 120541 121386
YP_009042826.1 NC_024359_p18 hypothetical protein phrog_12028 unknown function unknown function 1 6598 6945
YP_009042923.1 NC_024359_p115 hypothetical protein phrog_1070 anti-sigma factor moron, auxiliary metabolic gene and host takeover 1 85122 85712
YP_009042872.1 NC_024359_p64 hypothetical protein phrog_9075 unknown function unknown function -1 32324 32755
YP_009042821.1 NC_024359_p13 hypothetical protein phrog_1933 unknown function unknown function 1 5141 5338
YP_009042844.1 NC_024359_p36 hypothetical protein phrog_14763 unknown function unknown function -1 14315 14539
YP_009042963.1 NC_024359_p155 hypothetical protein phrog_9749 unknown function unknown function 1 117827 118273
YP_009042848.1 NC_024359_p40 hypothetical protein phrog_10136 unknown function unknown function -1 16564 16986
YP_009042893.1 NC_024359_p85 major capsid protein precursor phrog_752 major head protein head and packaging 1 47253 48659
YP_009042860.1 NC_024359_p52 DUF1768 domain-containing protein phrog_1017 unknown function unknown function -1 22306 22809
YP_009042919.1 NC_024359_p111 winged helix-turn-helix domain-containing protein phrog_1098 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 78936 80576
YP_009042920.1 NC_024359_p112 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 80594 82057
YP_009042972.1 NC_024359_p164 hypothetical protein phrog_1007 unknown function unknown function 1 123694 124422
YP_009042878.1 NC_024359_p70 hypothetical protein phrog_1321 unknown function unknown function 1 35893 36165
YP_009042915.1 NC_024359_p107 hypothetical protein phrog_9794 unknown function unknown function 1 75207 76499
YP_009042834.1 NC_024359_p26 hypothetical protein phrog_9112 unknown function unknown function 1 10378 10710
YP_009042908.1 NC_024359_p100 hypothetical protein phrog_1073 unknown function unknown function 1 64572 65105
YP_009042829.1 NC_024359_p21 hypothetical protein phrog_7738 unknown function unknown function 1 8723 9148
YP_009042862.1 NC_024359_p54 tRNA-splicing ligase phrog_1075 tRNA splicing ligase DNA, RNA and nucleotide metabolism -1 23127 24338
YP_009042838.1 NC_024359_p30 hypothetical protein phrog_10214 unknown function unknown function 1 11735 12094
YP_009042845.1 NC_024359_p37 hypothetical protein phrog_9379 unknown function unknown function -1 14540 15082
YP_009042970.1 NC_024359_p162 hypothetical protein phrog_10568 unknown function unknown function 1 122505 123083
YP_009042910.1 NC_024359_p102 baseplate assembly protein phrog_6 baseplate wedge subunit tail 1 65816 66862
YP_009042849.1 NC_024359_p41 hypothetical protein phrog_10442 unknown function unknown function -1 17051 17539
YP_009042930.1 NC_024359_p122 ribonucleotide-diphosphate reductase subunit alpha phrog_3987 ribonucleotide reductase large subunit DNA, RNA and nucleotide metabolism 1 89161 90510
YP_009042964.1 NC_024359_p156 hypothetical protein phrog_6360 unknown function unknown function 1 118279 118728
YP_009042906.1 NC_024359_p98 hypothetical protein phrog_7994 glycerophosphoryl diester phosphodiesterase other 1 62284 63816
YP_009042921.1 NC_024359_p113 exonuclease phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 82072 83124
YP_009042983.1 NC_024359_p175 hypothetical protein phrog_15935 unknown function unknown function 1 131086 131361
YP_009042884.1 NC_024359_p76 hypothetical protein phrog_1116 unknown function unknown function 1 39871 40509
YP_009042825.1 NC_024359_p17 hypothetical protein phrog_7175 unknown function unknown function 1 6306 6527
YP_009042843.1 NC_024359_p35 hypothetical protein phrog_9517 unknown function unknown function -1 13974 14255
YP_009042895.1 NC_024359_p87 hypothetical protein phrog_772 tail fiber protein tail 1 49098 49979
YP_009042853.1 NC_024359_p45 phosphoesterase phrog_547 phosphoesterase other -1 18959 19576
YP_009042979.1 NC_024359_p171 hypothetical protein phrog_16836 unknown function unknown function -1 128806 129087
YP_009042936.1 NC_024359_p128 hypothetical protein phrog_9691 thioredoxin domain DNA, RNA and nucleotide metabolism 1 94159 94458
YP_009042885.1 NC_024359_p77 hypothetical protein phrog_1991 unknown function unknown function 1 40499 40879
YP_009042842.1 NC_024359_p34 hypothetical protein phrog_121 unknown function unknown function -1 13450 13977
YP_009042947.1 NC_024359_p139 hypothetical protein phrog_1069 unknown function unknown function 1 106258 106734
YP_009042861.1 NC_024359_p53 hypothetical protein phrog_9717 unknown function unknown function -1 22811 23080
YP_009042823.1 NC_024359_p15 YopX-like protein singleton unknown function unknown function 1 5873 5977
YP_009042871.1 NC_024359_p63 hypothetical protein phrog_9389 unknown function unknown function -1 29623 29820
YP_009042868.1 NC_024359_p60 hypothetical protein phrog_1257 ribosome associated inhibitor A; zinc finger domain moron, auxiliary metabolic gene and host takeover -1 27586 27798
YP_009042958.1 NC_024359_p150 hypothetical protein phrog_1080 unknown function unknown function 1 114752 115297
YP_009042922.1 NC_024359_p114 exonuclease phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 83219 85102
YP_009042830.1 NC_024359_p22 hypothetical protein phrog_6964 unknown function unknown function 1 9166 9456
YP_009042966.1 NC_024359_p158 AAA_5 domain-containing protein phrog_249 porphyrin biosynthesis moron, auxiliary metabolic gene and host takeover 1 119538 120554
YP_009042946.1 NC_024359_p138 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 103995 106163
YP_009042969.1 NC_024359_p161 hypothetical protein phrog_10641 unknown function unknown function 1 121936 122508
YP_009042876.1 NC_024359_p68 hypothetical protein phrog_15252 unknown function unknown function -1 35138 35407
YP_009042926.1 NC_024359_p118 hypothetical protein phrog_10262 unknown function unknown function 1 87464 87688
YP_009042815.1 NC_024359_p7 hypothetical protein singleton unknown function unknown function 1 2906 3010
YP_009042850.1 NC_024359_p42 DUF4379 domain-containing protein phrog_9902 unknown function unknown function -1 17545 18177
YP_009042941.1 NC_024359_p133 PcfJ domain-containing protein phrog_9253 unknown function unknown function 1 98590 101049
YP_009042897.1 NC_024359_p89 hypothetical protein phrog_1127 unknown function unknown function 1 50875 51432
YP_009042898.1 NC_024359_p90 hypothetical protein phrog_1000 unknown function unknown function 1 51445 52284
YP_009042957.1 NC_024359_p149 hypothetical protein phrog_7143 unknown function unknown function 1 114361 114744
YP_009042855.1 NC_024359_p47 HAD-like domain-containing protein phrog_1238 phosphoheptose isomerase moron, auxiliary metabolic gene and host takeover -1 19808 20185
YP_009042851.1 NC_024359_p43 hypothetical protein phrog_12982 tail fiber protein tail -1 18180 18377
YP_009042943.1 NC_024359_p135 DNA-binding protein phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism 1 101924 102238
YP_009042982.1 NC_024359_p174 hypothetical protein phrog_12014 unknown function unknown function 1 130112 130894
YP_009042809.1 NC_024359_p1 hypothetical protein phrog_11464 unknown function unknown function 1 73 216
YP_009042952.1 NC_024359_p144 holin phrog_263 holin lysis 1 110486 110866
YP_009042813.1 NC_024359_p5 hypothetical protein phrog_17618 unknown function unknown function 1 1749 2102
YP_009042847.1 NC_024359_p39 hypothetical protein phrog_10246 unknown function unknown function -1 15309 16562
YP_009042812.1 NC_024359_p4 hypothetical protein phrog_7822 unknown function unknown function 1 1173 1616
YP_009042944.1 NC_024359_p136 DNA polymerase I phrog_4008 DNA polymerase DNA, RNA and nucleotide metabolism 1 102320 103156
YP_009042901.1 NC_024359_p93 hypothetical protein phrog_985 virion structural protein head and packaging 1 54364 54786
YP_009042846.1 NC_024359_p38 hypothetical protein phrog_9937 unknown function unknown function -1 15079 15306
YP_009042827.1 NC_024359_p19 hypothetical protein phrog_12804 unknown function unknown function 1 6893 7399
YP_009042912.1 NC_024359_p104 hypothetical protein phrog_1394 virion structural protein head and packaging 1 70944 71465
YP_009042883.1 NC_024359_p75 hypothetical protein phrog_13012 unknown function unknown function 1 39765 39881
YP_009042905.1 NC_024359_p97 tail lysin phrog_1015 tail protein with lysin activity tail 1 59879 62266
YP_009042822.1 NC_024359_p14 hypothetical protein phrog_9360 unknown function unknown function 1 5441 5569
YP_009042896.1 NC_024359_p88 hypothetical protein phrog_1004 virion structural protein head and packaging 1 49997 50815
YP_009042975.1 NC_024359_p167 hypothetical protein phrog_9719 unknown function unknown function 1 126174 126719
YP_009042837.1 NC_024359_p29 hypothetical protein phrog_10101 unknown function unknown function 1 11373 11735
YP_009042832.1 NC_024359_p24 hypothetical protein phrog_3392 unknown function unknown function 1 9638 9985
YP_009042859.1 NC_024359_p51 hypothetical protein phrog_9898 unknown function unknown function -1 22114 22305
YP_009042858.1 NC_024359_p50 hypothetical protein phrog_1460 tRNA amidotransferase DNA, RNA and nucleotide metabolism -1 21581 22117
YP_009042977.1 NC_024359_p169 hypothetical protein phrog_9671 unknown function unknown function 1 127270 128028
YP_009042914.1 NC_024359_p106 hypothetical protein phrog_1074 unknown function unknown function 1 74983 75204
YP_009042865.1 NC_024359_p57 hypothetical protein phrog_14899 unknown function unknown function -1 25088 25312
YP_009042948.1 NC_024359_p140 hypothetical protein phrog_1867 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 106771 108036
YP_009042903.1 NC_024359_p95 hypothetical protein phrog_1316 RNA polymerase beta subunit DNA, RNA and nucleotide metabolism 1 55450 56043
YP_009042909.1 NC_024359_p101 baseplate protein phrog_975 baseplate protein tail 1 65092 65802
YP_009042887.1 NC_024359_p79 3D domain-containing protein phrog_6631 unknown function unknown function 1 42141 42869
YP_009042980.1 NC_024359_p172 hypothetical protein phrog_3543 unknown function unknown function 1 129410 129769
YP_009042942.1 NC_024359_p134 synaptonemal complex 1 (SCP-1) domain-containing protein phrog_1054 unknown function unknown function 1 101143 101931
YP_009042882.1 NC_024359_p74 hypothetical protein phrog_1917 virion structural protein head and packaging 1 38840 39679
YP_009042840.1 NC_024359_p32 hypothetical protein phrog_9499 unknown function unknown function -1 12924 13190
YP_009042916.1 NC_024359_p108 hypothetical protein phrog_9920 unknown function unknown function 1 76531 76941
YP_009042938.1 NC_024359_p130 hypothetical protein phrog_12487 unknown function unknown function 1 94601 95788
YP_009042927.1 NC_024359_p119 hypothetical protein phrog_7516 unknown function unknown function 1 87685 88008
YP_009042924.1 NC_024359_p116 primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 85712 86773
YP_009042852.1 NC_024359_p44 hypothetical protein phrog_1934 unknown function unknown function -1 18367 18786
YP_009042841.1 NC_024359_p33 hypothetical protein phrog_9952 unknown function unknown function -1 13237 13407
YP_009042873.1 NC_024359_p65 hypothetical protein phrog_1215 unknown function unknown function -1 34126 34362
YP_009042881.1 NC_024359_p73 terminase large subunit phrog_675 terminase large subunit head and packaging 1 37218 38771
YP_009042985.1 NC_024359_p177 hypothetical protein phrog_4655 unknown function unknown function 1 131796 132071
YP_009042937.1 NC_024359_p129 hypothetical protein phrog_9795 unknown function unknown function 1 94461 94598
YP_009042984.1 NC_024359_p176 hypothetical protein phrog_10046 unknown function unknown function 1 131449 131712
YP_009042934.1 NC_024359_p126 hypothetical protein phrog_9820 unknown function unknown function 1 93441 93737
YP_009042911.1 NC_024359_p103 hypothetical protein phrog_2386 virion structural protein head and packaging 1 66898 70827
YP_009042891.1 NC_024359_p83 prohead protease phrog_1028 head maturation protease head and packaging 1 45403 46197
YP_009042833.1 NC_024359_p25 hypothetical protein phrog_9728 unknown function unknown function 1 10017 10298
YP_009042913.1 NC_024359_p105 tail protein phrog_877 unknown function unknown function 1 71533 74937
YP_009042904.1 NC_024359_p96 tail lysin phrog_1047 tail associated lysin tail 1 56105 59833
YP_009042955.1 NC_024359_p147 hypothetical protein phrog_1850 exopolyphosphatase other 1 112082 113011
YP_009042971.1 NC_024359_p163 hypothetical protein phrog_9358 unknown function unknown function 1 123076 123408
YP_009042949.1 NC_024359_p141 recombinase phrog_97 UvsX-like recombinase other 1 108106 109350
YP_009042856.1 NC_024359_p48 hypothetical protein phrog_9618 unknown function unknown function -1 20188 20544
YP_009042925.1 NC_024359_p117 deoxyuridine 5'-triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 86820 87467
YP_009042863.1 NC_024359_p55 hypothetical protein phrog_9650 unknown function unknown function -1 24447 24650
YP_009042874.1 NC_024359_p66 hypothetical protein phrog_937 hemolysin other -1 34412 34753
YP_009042902.1 NC_024359_p94 hypothetical protein phrog_1038 tail assembly chaperone tail 1 54939 55382
YP_009042935.1 NC_024359_p127 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 93761 94072
YP_009042951.1 NC_024359_p143 hypothetical protein phrog_1025 RNA polymerase sigma factor transcription regulation 1 109789 110427
YP_009042839.1 NC_024359_p31 serine/threonine protein phosphatase phrog_246 NinI-like serine-threonine phosphatase other -1 12138 12911
YP_009042900.1 NC_024359_p92 tail sheath protein phrog_279 tail sheath tail 1 52608 54296
YP_009042968.1 NC_024359_p160 hypothetical protein phrog_7350 unknown function unknown function 1 121448 121903
YP_009042945.1 NC_024359_p137 HNH endonuclease domain-containing protein phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism 1 103272 103769
YP_009042953.1 NC_024359_p145 Ig-like domain-containing protein phrog_215 structural protein with Ig domain head and packaging 1 110884 111591
YP_009042880.1 NC_024359_p72 terminase small subunit phrog_5340 terminase large subunit head and packaging 1 36587 36868
YP_009042869.1 NC_024359_p61 hypothetical protein phrog_6885 unknown function unknown function -1 27899 28117
YP_009042931.1 NC_024359_p123 ribonucleotide-diphosphate reductase subunit alpha phrog_3844 NrdA-like aerobic NDP reductase large subunit moron, auxiliary metabolic gene and host takeover 1 90721 91752
YP_009042962.1 NC_024359_p154 hypothetical protein phrog_1113 unknown function unknown function 1 116860 117744
YP_009042889.1 NC_024359_p81 hypothetical protein phrog_1108 portal protein head and packaging 1 43294 43644
YP_009042907.1 NC_024359_p99 hypothetical protein phrog_1011 virion structural protein head and packaging 1 63854 64567
YP_009042933.1 NC_024359_p125 flavodoxin phrog_883 flavodoxin moron, auxiliary metabolic gene and host takeover 1 92986 93438
YP_009042819.1 NC_024359_p11 hypothetical protein phrog_9852 unknown function unknown function 1 4104 4391
YP_009042817.1 NC_024359_p9 hypothetical protein phrog_10584 unknown function unknown function 1 3501 3674
YP_009042954.1 NC_024359_p146 hypothetical protein phrog_9872 unknown function unknown function 1 111699 112085
YP_009042976.1 NC_024359_p168 hypothetical protein phrog_9011 unknown function unknown function 1 126722 127255
YP_009042918.1 NC_024359_p110 DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 77176 78921
YP_009042866.1 NC_024359_p58 helix-turn-helix XRE-family-like protein phrog_3 transcriptional repressor transcription regulation -1 25326 25568
YP_009042974.1 NC_024359_p166 transposase domain-containing protein phrog_9186 unknown function unknown function 1 125020 126102
YP_009042836.1 NC_024359_p28 hypothetical protein phrog_12642 unknown function unknown function -1 11125 11340
YP_009042956.1 NC_024359_p148 metallophosphoesterase domain-containing protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 113070 114341
YP_009042810.1 NC_024359_p2 hypothetical protein phrog_4264 unknown function unknown function 1 421 768
YP_009042965.1 NC_024359_p157 hypothetical protein phrog_9512 unknown function unknown function 1 118829 119533
YP_009042888.1 NC_024359_p80 hypothetical protein phrog_9678 unknown function unknown function 1 42972 43292
YP_009042811.1 NC_024359_p3 hypothetical protein phrog_5149 unknown function unknown function 1 946 1167
YP_009042892.1 NC_024359_p84 hypothetical protein phrog_1133 unknown function unknown function 1 46190 47083
YP_009042973.1 NC_024359_p165 hypothetical protein phrog_1104 virion structural protein head and packaging 1 124438 124905
YP_009042978.1 NC_024359_p170 hypothetical protein phrog_10429 unknown function unknown function 1 128041 128331
YP_009042959.1 NC_024359_p151 hypothetical protein phrog_15858 unknown function unknown function 1 115343 115549
YP_009042818.1 NC_024359_p10 hypothetical protein phrog_9527 unknown function unknown function 1 3816 4091
YP_009042899.1 NC_024359_p91 hypothetical protein phrog_9471 unknown function unknown function 1 52284 52604
YP_009042814.1 NC_024359_p6 hypothetical protein phrog_10501 unknown function unknown function 1 2123 2401
YP_009042932.1 NC_024359_p124 ribonucleotide-diphosphate reductase subunit beta phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 91958 92989
YP_009042960.1 NC_024359_p152 hypothetical protein phrog_984 unknown function unknown function 1 115600 116307
YP_009042854.1 NC_024359_p46 hypothetical protein phrog_9695 unknown function unknown function -1 19573 19791
YP_009042961.1 NC_024359_p153 hypothetical protein phrog_2356 unknown function unknown function 1 116318 116800
YP_009042917.1 NC_024359_p109 XkdX domain-containing protein phrog_134 unknown function unknown function 1 76938 77075