Genomic map of Pseudomonas phage phiPSA2 (phiPSA2) (NC_024362)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024362
Definition
Pseudomonas phage phiPSA2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Ghunavirus; Pseudomonas virus PhiPSA2.
DB of origin
REFSEQ
Length
40472
Host Name
Pseudomonas syringae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
47
%GC
57.37
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009043261.1 NC_024362_p33 capsid assembly protein phrog_1052 head assembly head and packaging 1 22163 23038
YP_009043230.1 NC_024362_p2 hypothetical protein phrog_7884 unknown function unknown function 1 1191 1388
YP_009043275.1 NC_024362_p47 hypothetical protein phrog_2193 unknown function unknown function 1 39892 40065
YP_009043251.1 NC_024362_p23 hypothetical protein phrog_9312 unknown function unknown function 1 14932 15441
YP_009043231.1 NC_024362_p3 hypothetical protein phrog_7806 unknown function unknown function 1 1756 2235
YP_009043267.1 NC_024362_p39 internal virion protein C phrog_1339 internal virion protein head and packaging 1 28352 30568
YP_009043255.1 NC_024362_p27 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 18204 19148
YP_009043254.1 NC_024362_p26 hypothetical protein phrog_1334 unknown function unknown function 1 17998 18207
YP_009043237.1 NC_024362_p9 hypothetical protein phrog_11287 unknown function unknown function 1 7082 7354
YP_009043243.1 NC_024362_p15 host RNA-polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 10189 10356
YP_009043232.1 NC_024362_p4 hypothetical protein phrog_8679 unknown function unknown function 1 2266 2802
YP_009043245.1 NC_024362_p17 single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 10772 11473
YP_009043266.1 NC_024362_p38 internal virion protein B phrog_805 internal virion protein head and packaging 1 27772 28359
YP_009043253.1 NC_024362_p25 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 17610 18005
YP_009043268.1 NC_024362_p40 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 30581 34759
YP_009043241.1 NC_024362_p13 hypothetical protein phrog_1777 unknown function unknown function 1 9291 9548
YP_009043274.1 NC_024362_p46 DNA packaging protein B phrog_38 terminase large subunit head and packaging 1 37965 39713
YP_009043235.1 NC_024362_p7 T3/T7-like RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 4277 6934
YP_009043249.1 NC_024362_p21 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 12937 14646
YP_009043250.1 NC_024362_p22 hypothetical protein phrog_9727 unknown function unknown function 1 14665 14868
YP_009043256.1 NC_024362_p28 hypothetical protein phrog_1447 unknown function unknown function 1 19217 19459
YP_009043252.1 NC_024362_p24 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 15452 17599
YP_009043271.1 NC_024362_p43 type II holin phrog_920 holin lysis 1 37047 37262
YP_009043269.1 NC_024362_p41 tail fiber protein phrog_4242 tail fiber protein tail 1 34822 36651
YP_009043260.1 NC_024362_p32 head-tail connector protein phrog_449 head-tail adaptor connector 1 20463 22094
YP_009043257.1 NC_024362_p29 hypothetical protein phrog_1391 unknown function unknown function 1 19456 19734
YP_009043229.1 NC_024362_p1 hypothetical protein phrog_16407 unknown function unknown function 1 937 1191
YP_009043233.1 NC_024362_p5 hypothetical protein phrog_61 2OG-Fe(II) oxygenase moron, auxiliary metabolic gene and host takeover 1 2799 3503
YP_009043273.1 NC_024362_p45 Rz-like lysis protein phrog_1327 Rz-like spanin lysis 1 37516 37965
YP_009043234.1 NC_024362_p6 hypothetical protein phrog_9238 unknown function unknown function 1 3609 4148
YP_009043265.1 NC_024362_p37 internal virion protein A phrog_308 internal virion protein head and packaging 1 27327 27761
YP_009043240.1 NC_024362_p12 hypothetical protein phrog_21934 unknown function unknown function 1 8820 9098
YP_009043244.1 NC_024362_p16 hypothetical protein phrog_5138 unknown function unknown function 1 10353 10718
YP_009043263.1 NC_024362_p35 tail tubular protein A phrog_446 tail protein tail 1 24245 24832
YP_009043248.1 NC_024362_p20 hypothetical protein phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 12429 12968
YP_009043239.1 NC_024362_p11 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 7752 8816
YP_009043236.1 NC_024362_p8 hypothetical protein phrog_13030 RNA polymerase DNA, RNA and nucleotide metabolism 1 6948 7085
YP_009043264.1 NC_024362_p36 tail tubular protein B phrog_457 tail protein tail 1 24842 27268
YP_009043242.1 NC_024362_p14 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 9545 10192
YP_009043259.1 NC_024362_p31 tail assembly protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 20146 20448
YP_009043270.1 NC_024362_p42 hypothetical protein phrog_1795 tail fiber protein tail 1 36691 37047
YP_009043272.1 NC_024362_p44 DNA packaging protein small subunit phrog_1351 terminase small subunit head and packaging 1 37259 37516
YP_009043247.1 NC_024362_p19 lysozyme phrog_822 amidase lysis 1 11919 12359
YP_009043258.1 NC_024362_p30 hypothetical protein phrog_3986 unknown function unknown function 1 19731 20174
YP_009043262.1 NC_024362_p34 major capsid protein phrog_267 major head protein head and packaging 1 23138 24181
YP_009043246.1 NC_024362_p18 endonuclease I phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 11473 11916
YP_009043238.1 NC_024362_p10 hypothetical protein phrog_12775 unknown function unknown function 1 7354 7740