| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024362 |
Definition |
Pseudomonas phage phiPSA2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Ghunavirus; Pseudomonas virus PhiPSA2. |
DB of origin |
REFSEQ |
Length |
40472 |
Host Name |
Pseudomonas syringae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
47 |
%GC |
57.37 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009043261.1 | NC_024362_p33 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 22163 | 23038 |
| YP_009043230.1 | NC_024362_p2 | hypothetical protein | phrog_7884 | unknown function | unknown function | 1 | 1191 | 1388 |
| YP_009043275.1 | NC_024362_p47 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 39892 | 40065 |
| YP_009043251.1 | NC_024362_p23 | hypothetical protein | phrog_9312 | unknown function | unknown function | 1 | 14932 | 15441 |
| YP_009043231.1 | NC_024362_p3 | hypothetical protein | phrog_7806 | unknown function | unknown function | 1 | 1756 | 2235 |
| YP_009043267.1 | NC_024362_p39 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 28352 | 30568 |
| YP_009043255.1 | NC_024362_p27 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 18204 | 19148 |
| YP_009043254.1 | NC_024362_p26 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 17998 | 18207 |
| YP_009043237.1 | NC_024362_p9 | hypothetical protein | phrog_11287 | unknown function | unknown function | 1 | 7082 | 7354 |
| YP_009043243.1 | NC_024362_p15 | host RNA-polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 10189 | 10356 |
| YP_009043232.1 | NC_024362_p4 | hypothetical protein | phrog_8679 | unknown function | unknown function | 1 | 2266 | 2802 |
| YP_009043245.1 | NC_024362_p17 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 10772 | 11473 |
| YP_009043266.1 | NC_024362_p38 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 27772 | 28359 |
| YP_009043253.1 | NC_024362_p25 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 17610 | 18005 |
| YP_009043268.1 | NC_024362_p40 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 30581 | 34759 |
| YP_009043241.1 | NC_024362_p13 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 9291 | 9548 |
| YP_009043274.1 | NC_024362_p46 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 37965 | 39713 |
| YP_009043235.1 | NC_024362_p7 | T3/T7-like RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4277 | 6934 |
| YP_009043249.1 | NC_024362_p21 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 12937 | 14646 |
| YP_009043250.1 | NC_024362_p22 | hypothetical protein | phrog_9727 | unknown function | unknown function | 1 | 14665 | 14868 |
| YP_009043256.1 | NC_024362_p28 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 19217 | 19459 |
| YP_009043252.1 | NC_024362_p24 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 15452 | 17599 |
| YP_009043271.1 | NC_024362_p43 | type II holin | phrog_920 | holin | lysis | 1 | 37047 | 37262 |
| YP_009043269.1 | NC_024362_p41 | tail fiber protein | phrog_4242 | tail fiber protein | tail | 1 | 34822 | 36651 |
| YP_009043260.1 | NC_024362_p32 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 20463 | 22094 |
| YP_009043257.1 | NC_024362_p29 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 19456 | 19734 |
| YP_009043229.1 | NC_024362_p1 | hypothetical protein | phrog_16407 | unknown function | unknown function | 1 | 937 | 1191 |
| YP_009043233.1 | NC_024362_p5 | hypothetical protein | phrog_61 | 2OG-Fe(II) oxygenase | moron, auxiliary metabolic gene and host takeover | 1 | 2799 | 3503 |
| YP_009043273.1 | NC_024362_p45 | Rz-like lysis protein | phrog_1327 | Rz-like spanin | lysis | 1 | 37516 | 37965 |
| YP_009043234.1 | NC_024362_p6 | hypothetical protein | phrog_9238 | unknown function | unknown function | 1 | 3609 | 4148 |
| YP_009043265.1 | NC_024362_p37 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 27327 | 27761 |
| YP_009043240.1 | NC_024362_p12 | hypothetical protein | phrog_21934 | unknown function | unknown function | 1 | 8820 | 9098 |
| YP_009043244.1 | NC_024362_p16 | hypothetical protein | phrog_5138 | unknown function | unknown function | 1 | 10353 | 10718 |
| YP_009043263.1 | NC_024362_p35 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 24245 | 24832 |
| YP_009043248.1 | NC_024362_p20 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 12429 | 12968 |
| YP_009043239.1 | NC_024362_p11 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 7752 | 8816 |
| YP_009043236.1 | NC_024362_p8 | hypothetical protein | phrog_13030 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 6948 | 7085 |
| YP_009043264.1 | NC_024362_p36 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 24842 | 27268 |
| YP_009043242.1 | NC_024362_p14 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 9545 | 10192 |
| YP_009043259.1 | NC_024362_p31 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 20146 | 20448 |
| YP_009043270.1 | NC_024362_p42 | hypothetical protein | phrog_1795 | tail fiber protein | tail | 1 | 36691 | 37047 |
| YP_009043272.1 | NC_024362_p44 | DNA packaging protein small subunit | phrog_1351 | terminase small subunit | head and packaging | 1 | 37259 | 37516 |
| YP_009043247.1 | NC_024362_p19 | lysozyme | phrog_822 | amidase | lysis | 1 | 11919 | 12359 |
| YP_009043258.1 | NC_024362_p30 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 19731 | 20174 |
| YP_009043262.1 | NC_024362_p34 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 23138 | 24181 |
| YP_009043246.1 | NC_024362_p18 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 11473 | 11916 |
| YP_009043238.1 | NC_024362_p10 | hypothetical protein | phrog_12775 | unknown function | unknown function | 1 | 7354 | 7740 |