Genomic map of Pseudomonas phage phiPSA1 (phiPSA1) (NC_024365)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024365
Definition
Pseudomonas phage phiPSA1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
51090
Host Name
Pseudomonas syringae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
58.56
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009043571.1 NC_024365_p21 hypothetical protein phrog_1372 unknown function unknown function -1 18250 18564
YP_009043597.1 NC_024365_p47 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 47388 47909
YP_009043576.1 NC_024365_p26 hypothetical protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 25039 25695
YP_009043584.1 NC_024365_p34 pyocin large subunit phrog_9474 replication initiation protein DNA, RNA and nucleotide metabolism 1 33588 34382
YP_009043561.1 NC_024365_p11 tail fiber protein phrog_2712 tail fiber protein tail 1 11065 12177
YP_009043587.1 NC_024365_p37 NinB phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 36651 37070
YP_009043595.1 NC_024365_p45 hypothetical protein phrog_530 head maturation protease head and packaging 1 44170 45297
YP_009043554.1 NC_024365_p4 tail tape measure protein phrog_339 tail length tape measure protein tail 1 1236 5270
YP_009043602.1 NC_024365_p52 hypothetical protein phrog_290 minor tail protein tail 1 50128 51048
YP_009043557.1 NC_024365_p7 hypothetical protein phrog_2134 unknown function unknown function 1 6477 6875
YP_009043574.1 NC_024365_p24 hypothetical protein phrog_7614 unknown function unknown function -1 23667 24014
YP_009043575.1 NC_024365_p25 DNA exonuclease X phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 24337 25008
YP_009043599.1 NC_024365_p49 hypothetical protein phrog_161 head closure Hc1 connector 1 48911 49294
YP_009043556.1 NC_024365_p6 hypothetical protein phrog_2048 tail protein tail 1 5872 6474
YP_009043590.1 NC_024365_p40 chemotaxis protein phrog_2658 hol-like chemotaxis other 1 38623 38994
YP_009043558.1 NC_024365_p8 tail fiber protein phrog_31 central tail fiber J tail 1 6875 10012
YP_009043570.1 NC_024365_p20 hypothetical protein phrog_874 unknown function unknown function -1 17615 18253
YP_009043596.1 NC_024365_p46 hypothetical protein phrog_264 major head protein head and packaging 1 45785 46744
YP_009043582.1 NC_024365_p32 antirepressor protein phrog_63 anti-repressor Ant transcription regulation 1 32402 33136
YP_009043583.1 NC_024365_p33 peptidase phrog_8 transcriptional regulator transcription regulation 1 33133 33588
YP_009043566.1 NC_024365_p16 hypothetical protein phrog_6102 lipase moron, auxiliary metabolic gene and host takeover 1 14221 15465
YP_009043586.1 NC_024365_p36 hypothetical protein phrog_19775 unknown function unknown function 1 35527 35850
YP_009043551.1 NC_024365_p1 hypothetical protein phrog_313 Tail assembly chaperone tail 1 30 503
YP_009043601.1 NC_024365_p51 hypothetical protein phrog_179 tail terminator connector 1 49668 50063
YP_009043567.1 NC_024365_p17 integrase phrog_1 integrase integration and excision -1 15787 16971
YP_009043592.1 NC_024365_p42 hypothetical protein phrog_513 transposase integration and excision 1 39767 40390
YP_009043600.1 NC_024365_p50 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 49294 49671
YP_009043569.1 NC_024365_p19 hypothetical protein singleton unknown function unknown function 1 17298 17702
YP_009043591.1 NC_024365_p41 lipoprotein phrog_6065 unknown function unknown function 1 38994 39332
YP_009043578.1 NC_024365_p28 hypothetical protein phrog_1376 unknown function unknown function -1 26508 27632
YP_009043593.1 NC_024365_p43 terminase phrog_2 terminase large subunit head and packaging 1 40933 42198
YP_009043573.1 NC_024365_p23 DNA methyltransferase phrog_67 DNA methyltransferase other -1 22066 23307
YP_009043598.1 NC_024365_p48 hypothetical protein phrog_3517 head morphogenesis head and packaging 1 47906 48901
YP_009043579.1 NC_024365_p29 hypothetical protein phrog_16901 unknown function unknown function -1 28479 29306
YP_009043564.1 NC_024365_p14 hypothetical protein phrog_312 Rz-like spanin lysis 1 13484 13999
YP_009043594.1 NC_024365_p44 hypothetical protein phrog_146 portal protein head and packaging 1 42195 43997
YP_009043562.1 NC_024365_p12 hypothetical protein phrog_24907 unknown function unknown function 1 12174 12893
YP_009043589.1 NC_024365_p39 hypothetical protein phrog_3373 unknown function unknown function 1 37815 38396
YP_009043565.1 NC_024365_p15 hypothetical protein phrog_8454 unknown function unknown function 1 14012 14224
YP_009043563.1 NC_024365_p13 glycoside hydrolase family 19 protein phrog_181 endolysin lysis 1 12954 13487
YP_009043581.1 NC_024365_p31 repressor protein phrog_4 transcriptional repressor transcription regulation -1 30792 31574
YP_009043568.1 NC_024365_p18 hypothetical protein phrog_13517 unknown function unknown function -1 16839 17255
YP_009043577.1 NC_024365_p27 hypothetical protein phrog_2872 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 25707 26345
YP_009043553.1 NC_024365_p3 hypothetical protein phrog_2315 unknown function unknown function 1 832 1173
YP_009043552.1 NC_024365_p2 hypothetical protein phrog_1189 unknown function unknown function 1 521 772
YP_009043588.1 NC_024365_p38 NinG phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism 1 37234 37818
YP_009043555.1 NC_024365_p5 hypothetical protein phrog_1302 distal tail protein tail 1 5288 5872
YP_009043560.1 NC_024365_p10 hypothetical protein phrog_3370 unknown function unknown function 1 10374 11036
YP_009043580.1 NC_024365_p30 hypothetical protein singleton unknown function unknown function -1 29765 30286
YP_009043559.1 NC_024365_p9 hypothetical protein phrog_4047 unknown function unknown function 1 10009 10377
YP_009043585.1 NC_024365_p35 ATP-binding protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 34372 35190
YP_009043572.1 NC_024365_p22 DNA restriction methylase phrog_6263 DNA methyltransferase other -1 18929 20560