| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024365 |
Definition |
Pseudomonas phage phiPSA1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
51090 |
Host Name |
Pseudomonas syringae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
58.56 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009043571.1 | NC_024365_p21 | hypothetical protein | phrog_1372 | unknown function | unknown function | -1 | 18250 | 18564 |
| YP_009043597.1 | NC_024365_p47 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 47388 | 47909 |
| YP_009043576.1 | NC_024365_p26 | hypothetical protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25039 | 25695 |
| YP_009043584.1 | NC_024365_p34 | pyocin large subunit | phrog_9474 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 33588 | 34382 |
| YP_009043561.1 | NC_024365_p11 | tail fiber protein | phrog_2712 | tail fiber protein | tail | 1 | 11065 | 12177 |
| YP_009043587.1 | NC_024365_p37 | NinB | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 36651 | 37070 |
| YP_009043595.1 | NC_024365_p45 | hypothetical protein | phrog_530 | head maturation protease | head and packaging | 1 | 44170 | 45297 |
| YP_009043554.1 | NC_024365_p4 | tail tape measure protein | phrog_339 | tail length tape measure protein | tail | 1 | 1236 | 5270 |
| YP_009043602.1 | NC_024365_p52 | hypothetical protein | phrog_290 | minor tail protein | tail | 1 | 50128 | 51048 |
| YP_009043557.1 | NC_024365_p7 | hypothetical protein | phrog_2134 | unknown function | unknown function | 1 | 6477 | 6875 |
| YP_009043574.1 | NC_024365_p24 | hypothetical protein | phrog_7614 | unknown function | unknown function | -1 | 23667 | 24014 |
| YP_009043575.1 | NC_024365_p25 | DNA exonuclease X | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | -1 | 24337 | 25008 |
| YP_009043599.1 | NC_024365_p49 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 48911 | 49294 |
| YP_009043556.1 | NC_024365_p6 | hypothetical protein | phrog_2048 | tail protein | tail | 1 | 5872 | 6474 |
| YP_009043590.1 | NC_024365_p40 | chemotaxis protein | phrog_2658 | hol-like chemotaxis | other | 1 | 38623 | 38994 |
| YP_009043558.1 | NC_024365_p8 | tail fiber protein | phrog_31 | central tail fiber J | tail | 1 | 6875 | 10012 |
| YP_009043570.1 | NC_024365_p20 | hypothetical protein | phrog_874 | unknown function | unknown function | -1 | 17615 | 18253 |
| YP_009043596.1 | NC_024365_p46 | hypothetical protein | phrog_264 | major head protein | head and packaging | 1 | 45785 | 46744 |
| YP_009043582.1 | NC_024365_p32 | antirepressor protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 32402 | 33136 |
| YP_009043583.1 | NC_024365_p33 | peptidase | phrog_8 | transcriptional regulator | transcription regulation | 1 | 33133 | 33588 |
| YP_009043566.1 | NC_024365_p16 | hypothetical protein | phrog_6102 | lipase | moron, auxiliary metabolic gene and host takeover | 1 | 14221 | 15465 |
| YP_009043586.1 | NC_024365_p36 | hypothetical protein | phrog_19775 | unknown function | unknown function | 1 | 35527 | 35850 |
| YP_009043551.1 | NC_024365_p1 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 30 | 503 |
| YP_009043601.1 | NC_024365_p51 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 49668 | 50063 |
| YP_009043567.1 | NC_024365_p17 | integrase | phrog_1 | integrase | integration and excision | -1 | 15787 | 16971 |
| YP_009043592.1 | NC_024365_p42 | hypothetical protein | phrog_513 | transposase | integration and excision | 1 | 39767 | 40390 |
| YP_009043600.1 | NC_024365_p50 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 49294 | 49671 |
| YP_009043569.1 | NC_024365_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17298 | 17702 |
| YP_009043591.1 | NC_024365_p41 | lipoprotein | phrog_6065 | unknown function | unknown function | 1 | 38994 | 39332 |
| YP_009043578.1 | NC_024365_p28 | hypothetical protein | phrog_1376 | unknown function | unknown function | -1 | 26508 | 27632 |
| YP_009043593.1 | NC_024365_p43 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 40933 | 42198 |
| YP_009043573.1 | NC_024365_p23 | DNA methyltransferase | phrog_67 | DNA methyltransferase | other | -1 | 22066 | 23307 |
| YP_009043598.1 | NC_024365_p48 | hypothetical protein | phrog_3517 | head morphogenesis | head and packaging | 1 | 47906 | 48901 |
| YP_009043579.1 | NC_024365_p29 | hypothetical protein | phrog_16901 | unknown function | unknown function | -1 | 28479 | 29306 |
| YP_009043564.1 | NC_024365_p14 | hypothetical protein | phrog_312 | Rz-like spanin | lysis | 1 | 13484 | 13999 |
| YP_009043594.1 | NC_024365_p44 | hypothetical protein | phrog_146 | portal protein | head and packaging | 1 | 42195 | 43997 |
| YP_009043562.1 | NC_024365_p12 | hypothetical protein | phrog_24907 | unknown function | unknown function | 1 | 12174 | 12893 |
| YP_009043589.1 | NC_024365_p39 | hypothetical protein | phrog_3373 | unknown function | unknown function | 1 | 37815 | 38396 |
| YP_009043565.1 | NC_024365_p15 | hypothetical protein | phrog_8454 | unknown function | unknown function | 1 | 14012 | 14224 |
| YP_009043563.1 | NC_024365_p13 | glycoside hydrolase family 19 protein | phrog_181 | endolysin | lysis | 1 | 12954 | 13487 |
| YP_009043581.1 | NC_024365_p31 | repressor protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 30792 | 31574 |
| YP_009043568.1 | NC_024365_p18 | hypothetical protein | phrog_13517 | unknown function | unknown function | -1 | 16839 | 17255 |
| YP_009043577.1 | NC_024365_p27 | hypothetical protein | phrog_2872 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 25707 | 26345 |
| YP_009043553.1 | NC_024365_p3 | hypothetical protein | phrog_2315 | unknown function | unknown function | 1 | 832 | 1173 |
| YP_009043552.1 | NC_024365_p2 | hypothetical protein | phrog_1189 | unknown function | unknown function | 1 | 521 | 772 |
| YP_009043588.1 | NC_024365_p38 | NinG | phrog_171 | NinG/ Rap DNA junction specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37234 | 37818 |
| YP_009043555.1 | NC_024365_p5 | hypothetical protein | phrog_1302 | distal tail protein | tail | 1 | 5288 | 5872 |
| YP_009043560.1 | NC_024365_p10 | hypothetical protein | phrog_3370 | unknown function | unknown function | 1 | 10374 | 11036 |
| YP_009043580.1 | NC_024365_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29765 | 30286 |
| YP_009043559.1 | NC_024365_p9 | hypothetical protein | phrog_4047 | unknown function | unknown function | 1 | 10009 | 10377 |
| YP_009043585.1 | NC_024365_p35 | ATP-binding protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 34372 | 35190 |
| YP_009043572.1 | NC_024365_p22 | DNA restriction methylase | phrog_6263 | DNA methyltransferase | other | -1 | 18929 | 20560 |