| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024366 |
Definition |
Mycobacterium phage OkiRoe, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
REFSEQ |
Length |
62661 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
96 |
%GC |
64.93 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009043695.1 | NC_024366_p93 | hypothetical protein | phrog_10342 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 60824 | 61213 |
| YP_009043607.1 | NC_024366_p5 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 1327 | 2754 |
| YP_009043613.1 | NC_024366_p11 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 9087 | 9470 |
| YP_009043651.1 | NC_024366_p49 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 38535 | 38813 |
| YP_009043621.1 | NC_024366_p19 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16324 | 17454 |
| YP_009043669.1 | NC_024366_p67 | hypothetical protein | phrog_5505 | unknown function | unknown function | 1 | 49233 | 49448 |
| YP_009043656.1 | NC_024366_p54 | hypothetical protein | phrog_1498 | unknown function | unknown function | 1 | 40437 | 40604 |
| YP_009043637.1 | NC_024366_p35 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 30291 | 30515 |
| YP_009043691.1 | NC_024366_p89 | hypothetical protein | phrog_7638 | unknown function | unknown function | 1 | 59007 | 59366 |
| YP_009043635.1 | NC_024366_p33 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28926 | 30143 |
| YP_009043675.1 | NC_024366_p73 | hypothetical protein | phrog_5035 | unknown function | unknown function | 1 | 51286 | 51543 |
| YP_009043647.1 | NC_024366_p45 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 36120 | 36755 |
| YP_009043661.1 | NC_024366_p59 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 42149 | 42739 |
| YP_009043660.1 | NC_024366_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41937 | 42068 |
| YP_009043616.1 | NC_024366_p14 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 10067 | 10489 |
| YP_009043685.1 | NC_024366_p83 | hypothetical protein | phrog_16134 | unknown function | unknown function | 1 | 56495 | 56803 |
| YP_009043697.1 | NC_024366_p95 | hypothetical protein | phrog_10816 | unknown function | unknown function | 1 | 62052 | 62231 |
| YP_009043611.1 | NC_024366_p9 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 7360 | 7884 |
| YP_009043630.1 | NC_024366_p28 | lysin A | phrog_317 | endolysin | lysis | 1 | 25416 | 27050 |
| YP_009043631.1 | NC_024366_p29 | lysin B | phrog_102 | endolysin | lysis | 1 | 27047 | 27919 |
| YP_009043686.1 | NC_024366_p84 | hypothetical protein | phrog_3665 | unknown function | unknown function | 1 | 56800 | 56961 |
| YP_009043680.1 | NC_024366_p78 | RtcB | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 53388 | 54593 |
| YP_009043614.1 | NC_024366_p12 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 9470 | 9832 |
| YP_009043633.1 | NC_024366_p31 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28365 | 28691 |
| YP_009043688.1 | NC_024366_p86 | hypothetical protein | phrog_9985 | unknown function | unknown function | 1 | 57404 | 57679 |
| YP_009043665.1 | NC_024366_p63 | primase/polymerase | phrog_10729 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 43991 | 46150 |
| YP_009043644.1 | NC_024366_p42 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 34807 | 34995 |
| YP_009043609.1 | NC_024366_p7 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4253 | 7009 |
| YP_009043627.1 | NC_024366_p25 | hypothetical protein | phrog_10753 | unknown function | unknown function | 1 | 23672 | 23950 |
| YP_009043671.1 | NC_024366_p69 | hypothetical protein | phrog_2342 | unknown function | unknown function | 1 | 49648 | 50502 |
| YP_009043694.1 | NC_024366_p92 | hypothetical protein | phrog_8588 | unknown function | unknown function | 1 | 60382 | 60684 |
| YP_009043677.1 | NC_024366_p75 | hypothetical protein | phrog_5288 | unknown function | unknown function | 1 | 52104 | 52364 |
| YP_009043642.1 | NC_024366_p40 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 33919 | 34320 |
| YP_009043654.1 | NC_024366_p52 | hypothetical protein | phrog_2831 | unknown function | unknown function | 1 | 39776 | 40171 |
| YP_009043628.1 | NC_024366_p26 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 23934 | 25001 |
| YP_009043638.1 | NC_024366_p36 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 30638 | 31096 |
| YP_009043610.1 | NC_024366_p8 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 7006 | 7206 |
| YP_009043673.1 | NC_024366_p71 | hypothetical protein | phrog_5135 | unknown function | unknown function | 1 | 50747 | 51082 |
| YP_009043666.1 | NC_024366_p64 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 46147 | 47856 |
| YP_009043619.1 | NC_024366_p17 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 11278 | 11724 |
| YP_009043608.1 | NC_024366_p6 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2767 | 4302 |
| YP_009043640.1 | NC_024366_p38 | hypothetical protein | phrog_15740 | unknown function | unknown function | 1 | 32783 | 32923 |
| YP_009043670.1 | NC_024366_p68 | hypothetical protein | phrog_11424 | unknown function | unknown function | 1 | 49484 | 49651 |
| YP_009043668.1 | NC_024366_p66 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 48299 | 49147 |
| YP_009043692.1 | NC_024366_p90 | hypothetical protein | phrog_6842 | unknown function | unknown function | 1 | 59586 | 59915 |
| YP_009043646.1 | NC_024366_p44 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 35321 | 36079 |
| YP_009043664.1 | NC_024366_p62 | endonuclease | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43580 | 43960 |
| YP_009043655.1 | NC_024366_p53 | DnaQ-like exonuclease | phrog_2870 | unknown function | unknown function | 1 | 40183 | 40440 |
| YP_009043606.1 | NC_024366_p4 | terminase small subunit | phrog_1459 | terminase small subunit | head and packaging | 1 | 1107 | 1334 |
| YP_009043696.1 | NC_024366_p94 | hypothetical protein | phrog_31576 | unknown function | unknown function | 1 | 61605 | 62039 |
| YP_009043639.1 | NC_024366_p37 | integrase | phrog_95 | integrase | integration and excision | 1 | 31310 | 32725 |
| YP_009043674.1 | NC_024366_p72 | hypothetical protein | phrog_2869 | unknown function | unknown function | 1 | 51079 | 51276 |
| YP_009043603.1 | NC_024366_p1 | hypothetical protein | phrog_10556 | unknown function | unknown function | 1 | 54 | 278 |
| YP_009043624.1 | NC_024366_p22 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 19775 | 20860 |
| YP_009043650.1 | NC_024366_p48 | hypothetical protein | phrog_9124 | unknown function | unknown function | 1 | 38308 | 38538 |
| YP_009043653.1 | NC_024366_p51 | hypothetical protein | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 39114 | 39779 |
| YP_009043618.1 | NC_024366_p16 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 11278 | 12119 |
| YP_009043658.1 | NC_024366_p56 | hypothetical protein | phrog_10500 | unknown function | unknown function | 1 | 41440 | 41682 |
| YP_009043676.1 | NC_024366_p74 | hypothetical protein | phrog_3868 | unknown function | unknown function | 1 | 51530 | 52093 |
| YP_009043683.1 | NC_024366_p81 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 55193 | 55834 |
| YP_009043693.1 | NC_024366_p91 | hypothetical protein | phrog_6135 | unknown function | unknown function | 1 | 60019 | 60279 |
| YP_009043617.1 | NC_024366_p15 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 10530 | 11141 |
| YP_009043626.1 | NC_024366_p24 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 21161 | 23659 |
| YP_009043625.1 | NC_024366_p23 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 20860 | 21177 |
| YP_009043605.1 | NC_024366_p3 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 517 | 747 |
| YP_009043641.1 | NC_024366_p39 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 32953 | 33795 |
| YP_009043657.1 | NC_024366_p55 | hypothetical protein | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 40601 | 41461 |
| YP_009043698.1 | NC_024366_p96 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 62228 | 62533 |
| YP_009043672.1 | NC_024366_p70 | hypothetical protein | phrog_7217 | unknown function | unknown function | 1 | 50499 | 50750 |
| YP_009043622.1 | NC_024366_p20 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17496 | 19268 |
| YP_009043604.1 | NC_024366_p2 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 275 | 520 |
| YP_009043632.1 | NC_024366_p30 | holin | phrog_565 | holin | lysis | 1 | 27916 | 28368 |
| YP_009043645.1 | NC_024366_p43 | hypothetical protein | phrog_11593 | unknown function | unknown function | 1 | 35074 | 35226 |
| YP_009043684.1 | NC_024366_p82 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 55827 | 56504 |
| YP_009043636.1 | NC_024366_p34 | hypothetical protein | phrog_16066 | unknown function | unknown function | 1 | 30143 | 30304 |
| YP_009043679.1 | NC_024366_p77 | hypothetical protein | phrog_9980 | unknown function | unknown function | 1 | 52645 | 53235 |
| YP_009043662.1 | NC_024366_p60 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 42847 | 43095 |
| YP_009043643.1 | NC_024366_p41 | CRO protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 34418 | 34804 |
| YP_009043690.1 | NC_024366_p88 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 58212 | 58898 |
| YP_009043678.1 | NC_024366_p76 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 52364 | 52573 |
| YP_009043615.1 | NC_024366_p13 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 9804 | 10070 |
| YP_009043652.1 | NC_024366_p50 | hypothetical protein | phrog_10462 | unknown function | unknown function | 1 | 38810 | 38962 |
| YP_009043648.1 | NC_024366_p46 | DNA polymerase III | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | 1 | 36793 | 37923 |
| YP_009043659.1 | NC_024366_p57 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 41679 | 41891 |
| YP_009043649.1 | NC_024366_p47 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 37965 | 38303 |
| YP_009043629.1 | NC_024366_p27 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 25026 | 25388 |
| YP_009043620.1 | NC_024366_p18 | tapemeasure | phrog_971 | endolysin | lysis | 1 | 12137 | 16246 |
| YP_009043687.1 | NC_024366_p85 | hypothetical protein | phrog_2974 | unknown function | unknown function | 1 | 57074 | 57319 |
| YP_009043663.1 | NC_024366_p61 | endonuclease | phrog_10696 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43092 | 43583 |
| YP_009043689.1 | NC_024366_p87 | hypothetical protein | phrog_10190 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 57680 | 58087 |
| YP_009043682.1 | NC_024366_p80 | hypothetical protein | phrog_8575 | unknown function | unknown function | 1 | 54960 | 55193 |
| YP_009043681.1 | NC_024366_p79 | hypothetical protein | phrog_3167 | unknown function | unknown function | 1 | 54598 | 54963 |
| YP_009043612.1 | NC_024366_p10 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7955 | 8887 |
| YP_009043667.1 | NC_024366_p65 | RusA | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47934 | 48299 |
| YP_009043634.1 | NC_024366_p32 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 28688 | 28942 |
| YP_009043623.1 | NC_024366_p21 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 19269 | 19778 |