Genomic map of Mycobacterium phage OkiRoe (NC_024366)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024366
Definition
Mycobacterium phage OkiRoe, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus.
DB of origin
REFSEQ
Length
62661
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
96
%GC
64.93
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009043695.1 NC_024366_p93 hypothetical protein phrog_10342 DNA binding protein DNA, RNA and nucleotide metabolism 1 60824 61213
YP_009043607.1 NC_024366_p5 terminase phrog_2 terminase large subunit head and packaging 1 1327 2754
YP_009043613.1 NC_024366_p11 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 9087 9470
YP_009043651.1 NC_024366_p49 hypothetical protein phrog_1956 unknown function unknown function 1 38535 38813
YP_009043621.1 NC_024366_p19 minor tail protein phrog_106 minor tail protein tail 1 16324 17454
YP_009043669.1 NC_024366_p67 hypothetical protein phrog_5505 unknown function unknown function 1 49233 49448
YP_009043656.1 NC_024366_p54 hypothetical protein phrog_1498 unknown function unknown function 1 40437 40604
YP_009043637.1 NC_024366_p35 hypothetical protein phrog_1042 unknown function unknown function 1 30291 30515
YP_009043691.1 NC_024366_p89 hypothetical protein phrog_7638 unknown function unknown function 1 59007 59366
YP_009043635.1 NC_024366_p33 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 28926 30143
YP_009043675.1 NC_024366_p73 hypothetical protein phrog_5035 unknown function unknown function 1 51286 51543
YP_009043647.1 NC_024366_p45 hypothetical protein phrog_2781 unknown function unknown function 1 36120 36755
YP_009043661.1 NC_024366_p59 hypothetical protein phrog_1911 unknown function unknown function 1 42149 42739
YP_009043660.1 NC_024366_p58 hypothetical protein singleton unknown function unknown function 1 41937 42068
YP_009043616.1 NC_024366_p14 hypothetical protein phrog_123 tail terminator connector 1 10067 10489
YP_009043685.1 NC_024366_p83 hypothetical protein phrog_16134 unknown function unknown function 1 56495 56803
YP_009043697.1 NC_024366_p95 hypothetical protein phrog_10816 unknown function unknown function 1 62052 62231
YP_009043611.1 NC_024366_p9 scaffolding protein phrog_1793 head scaffolding protein head and packaging 1 7360 7884
YP_009043630.1 NC_024366_p28 lysin A phrog_317 endolysin lysis 1 25416 27050
YP_009043631.1 NC_024366_p29 lysin B phrog_102 endolysin lysis 1 27047 27919
YP_009043686.1 NC_024366_p84 hypothetical protein phrog_3665 unknown function unknown function 1 56800 56961
YP_009043680.1 NC_024366_p78 RtcB phrog_1075 tRNA splicing ligase DNA, RNA and nucleotide metabolism 1 53388 54593
YP_009043614.1 NC_024366_p12 hypothetical protein phrog_763 head-tail adaptor connector 1 9470 9832
YP_009043633.1 NC_024366_p31 hypothetical protein phrog_404 minor tail protein tail 1 28365 28691
YP_009043688.1 NC_024366_p86 hypothetical protein phrog_9985 unknown function unknown function 1 57404 57679
YP_009043665.1 NC_024366_p63 primase/polymerase phrog_10729 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 43991 46150
YP_009043644.1 NC_024366_p42 hypothetical protein phrog_2908 unknown function unknown function 1 34807 34995
YP_009043609.1 NC_024366_p7 capsid maturation protease phrog_1752 head maturation protease head and packaging 1 4253 7009
YP_009043627.1 NC_024366_p25 hypothetical protein phrog_10753 unknown function unknown function 1 23672 23950
YP_009043671.1 NC_024366_p69 hypothetical protein phrog_2342 unknown function unknown function 1 49648 50502
YP_009043694.1 NC_024366_p92 hypothetical protein phrog_8588 unknown function unknown function 1 60382 60684
YP_009043677.1 NC_024366_p75 hypothetical protein phrog_5288 unknown function unknown function 1 52104 52364
YP_009043642.1 NC_024366_p40 immunity repressor phrog_1746 transcriptional repressor transcription regulation -1 33919 34320
YP_009043654.1 NC_024366_p52 hypothetical protein phrog_2831 unknown function unknown function 1 39776 40171
YP_009043628.1 NC_024366_p26 minor tail protein phrog_416 minor tail protein tail 1 23934 25001
YP_009043638.1 NC_024366_p36 hypothetical protein phrog_2311 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 30638 31096
YP_009043610.1 NC_024366_p8 hypothetical protein phrog_1757 unknown function unknown function 1 7006 7206
YP_009043673.1 NC_024366_p71 hypothetical protein phrog_5135 unknown function unknown function 1 50747 51082
YP_009043666.1 NC_024366_p64 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 46147 47856
YP_009043619.1 NC_024366_p17 tail assembly chaperone phrog_1861 unknown function unknown function 1 11278 11724
YP_009043608.1 NC_024366_p6 portal protein phrog_104 portal protein head and packaging 1 2767 4302
YP_009043640.1 NC_024366_p38 hypothetical protein phrog_15740 unknown function unknown function 1 32783 32923
YP_009043670.1 NC_024366_p68 hypothetical protein phrog_11424 unknown function unknown function 1 49484 49651
YP_009043668.1 NC_024366_p66 hypothetical protein phrog_908 unknown function unknown function 1 48299 49147
YP_009043692.1 NC_024366_p90 hypothetical protein phrog_6842 unknown function unknown function 1 59586 59915
YP_009043646.1 NC_024366_p44 hypothetical protein phrog_2286 unknown function unknown function 1 35321 36079
YP_009043664.1 NC_024366_p62 endonuclease phrog_1571 HNH endonuclease DNA, RNA and nucleotide metabolism 1 43580 43960
YP_009043655.1 NC_024366_p53 DnaQ-like exonuclease phrog_2870 unknown function unknown function 1 40183 40440
YP_009043606.1 NC_024366_p4 terminase small subunit phrog_1459 terminase small subunit head and packaging 1 1107 1334
YP_009043696.1 NC_024366_p94 hypothetical protein phrog_31576 unknown function unknown function 1 61605 62039
YP_009043639.1 NC_024366_p37 integrase phrog_95 integrase integration and excision 1 31310 32725
YP_009043674.1 NC_024366_p72 hypothetical protein phrog_2869 unknown function unknown function 1 51079 51276
YP_009043603.1 NC_024366_p1 hypothetical protein phrog_10556 unknown function unknown function 1 54 278
YP_009043624.1 NC_024366_p22 minor tail protein phrog_1565 minor tail protein tail 1 19775 20860
YP_009043650.1 NC_024366_p48 hypothetical protein phrog_9124 unknown function unknown function 1 38308 38538
YP_009043653.1 NC_024366_p51 hypothetical protein phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 39114 39779
YP_009043618.1 NC_024366_p16 tail assembly chaperone phrog_1326 tail assembly chaperone tail 1 11278 12119
YP_009043658.1 NC_024366_p56 hypothetical protein phrog_10500 unknown function unknown function 1 41440 41682
YP_009043676.1 NC_024366_p74 hypothetical protein phrog_3868 unknown function unknown function 1 51530 52093
YP_009043683.1 NC_024366_p81 hypothetical protein phrog_2822 unknown function unknown function 1 55193 55834
YP_009043693.1 NC_024366_p91 hypothetical protein phrog_6135 unknown function unknown function 1 60019 60279
YP_009043617.1 NC_024366_p15 major tail subunit phrog_117 major tail protein tail 1 10530 11141
YP_009043626.1 NC_024366_p24 minor tail protein phrog_346 minor tail protein tail 1 21161 23659
YP_009043625.1 NC_024366_p23 hypothetical protein phrog_1736 minor tail protein tail 1 20860 21177
YP_009043605.1 NC_024366_p3 hypothetical protein phrog_2293 unknown function unknown function 1 517 747
YP_009043641.1 NC_024366_p39 hypothetical protein phrog_950 unknown function unknown function -1 32953 33795
YP_009043657.1 NC_024366_p55 hypothetical protein phrog_1674 exonuclease DNA, RNA and nucleotide metabolism 1 40601 41461
YP_009043698.1 NC_024366_p96 HNH endonuclease phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 62228 62533
YP_009043672.1 NC_024366_p70 hypothetical protein phrog_7217 unknown function unknown function 1 50499 50750
YP_009043622.1 NC_024366_p20 minor tail protein phrog_110 minor tail protein tail 1 17496 19268
YP_009043604.1 NC_024366_p2 hypothetical protein phrog_2074 unknown function unknown function 1 275 520
YP_009043632.1 NC_024366_p30 holin phrog_565 holin lysis 1 27916 28368
YP_009043645.1 NC_024366_p43 hypothetical protein phrog_11593 unknown function unknown function 1 35074 35226
YP_009043684.1 NC_024366_p82 hypothetical protein phrog_2493 unknown function unknown function 1 55827 56504
YP_009043636.1 NC_024366_p34 hypothetical protein phrog_16066 unknown function unknown function 1 30143 30304
YP_009043679.1 NC_024366_p77 hypothetical protein phrog_9980 unknown function unknown function 1 52645 53235
YP_009043662.1 NC_024366_p60 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 42847 43095
YP_009043643.1 NC_024366_p41 CRO protein phrog_1702 transcriptional repressor transcription regulation 1 34418 34804
YP_009043690.1 NC_024366_p88 hypothetical protein phrog_2433 unknown function unknown function 1 58212 58898
YP_009043678.1 NC_024366_p76 hypothetical protein phrog_666 unknown function unknown function 1 52364 52573
YP_009043615.1 NC_024366_p13 hypothetical protein phrog_387 neck protein connector 1 9804 10070
YP_009043652.1 NC_024366_p50 hypothetical protein phrog_10462 unknown function unknown function 1 38810 38962
YP_009043648.1 NC_024366_p46 DNA polymerase III phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism 1 36793 37923
YP_009043659.1 NC_024366_p57 hypothetical protein phrog_1581 unknown function unknown function 1 41679 41891
YP_009043649.1 NC_024366_p47 hypothetical protein phrog_301 secreted protein other 1 37965 38303
YP_009043629.1 NC_024366_p27 hypothetical protein phrog_240 head protein head and packaging 1 25026 25388
YP_009043620.1 NC_024366_p18 tapemeasure phrog_971 endolysin lysis 1 12137 16246
YP_009043687.1 NC_024366_p85 hypothetical protein phrog_2974 unknown function unknown function 1 57074 57319
YP_009043663.1 NC_024366_p61 endonuclease phrog_10696 HNH endonuclease DNA, RNA and nucleotide metabolism 1 43092 43583
YP_009043689.1 NC_024366_p87 hypothetical protein phrog_10190 DNA binding protein DNA, RNA and nucleotide metabolism 1 57680 58087
YP_009043682.1 NC_024366_p80 hypothetical protein phrog_8575 unknown function unknown function 1 54960 55193
YP_009043681.1 NC_024366_p79 hypothetical protein phrog_3167 unknown function unknown function 1 54598 54963
YP_009043612.1 NC_024366_p10 major capsid protein phrog_10 major head protein head and packaging 1 7955 8887
YP_009043667.1 NC_024366_p65 RusA phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 47934 48299
YP_009043634.1 NC_024366_p32 hypothetical protein phrog_1738 unknown function unknown function 1 28688 28942
YP_009043623.1 NC_024366_p21 minor tail protein phrog_1697 minor tail protein tail 1 19269 19778