Genomic map of Mycobacterium phage Pinto (NC_024368)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024368
Definition
Mycobacterium phage Pinto, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
50610
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
87
%GC
63.53
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009043847.1 NC_024368_p63 hypothetical protein phrog_6513 unknown function unknown function -1 40956 41150
YP_009043825.1 NC_024368_p41 hypothetical protein phrog_2035 unknown function unknown function -1 31526 31696
YP_009043867.1 NC_024368_p83 hypothetical protein phrog_6135 unknown function unknown function -1 48567 48836
YP_009043809.1 NC_024368_p25 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 15654 16031
YP_009043833.1 NC_024368_p49 sigma-K factor phrog_354 sigma-K factor transcription regulation -1 35223 36038
YP_009043831.1 NC_024368_p47 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 34556 35047
YP_009043848.1 NC_024368_p64 DnaB-like protein phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41147 41956
YP_009043789.1 NC_024368_p5 hypothetical protein phrog_2830 unknown function unknown function 1 1918 2148
YP_009043860.1 NC_024368_p76 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47158 47457
YP_009043821.1 NC_024368_p37 hypothetical protein phrog_1560 unknown function unknown function 1 28459 28671
YP_009043868.1 NC_024368_p84 hypothetical protein phrog_16282 unknown function unknown function -1 48967 49035
YP_009043791.1 NC_024368_p7 hypothetical protein phrog_1197 tail protein tail 1 2390 3460
YP_009043802.1 NC_024368_p18 hypothetical protein phrog_1857 head-tail connector protein connector 1 12796 13032
YP_009043869.1 NC_024368_p85 DNA methylase phrog_363 DNA methyltransferase other -1 49108 49797
YP_009043839.1 NC_024368_p55 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38926 39447
YP_009043807.1 NC_024368_p23 major tail protein phrog_117 major tail protein tail 1 14697 15545
YP_009043796.1 NC_024368_p12 lysin B phrog_102 endolysin lysis 1 6133 7101
YP_009043865.1 NC_024368_p81 hypothetical protein phrog_2093 unknown function unknown function -1 48272 48424
YP_009043810.1 NC_024368_p26 tapemeasure phrog_305 tail length tape measure protein tail 1 16466 18934
YP_009043866.1 NC_024368_p82 hypothetical protein phrog_932 unknown function unknown function -1 48421 48570
YP_009043794.1 NC_024368_p10 hypothetical protein phrog_747 unknown function unknown function 1 4453 4710
YP_009043787.1 NC_024368_p3 hypothetical protein phrog_226 minor tail protein tail 1 1130 1570
YP_009043828.1 NC_024368_p44 hypothetical protein phrog_383 unknown function unknown function -1 32045 32401
YP_009043792.1 NC_024368_p8 hypothetical protein phrog_553 minor tail protein tail 1 3470 4171
YP_009043806.1 NC_024368_p22 hypothetical protein phrog_123 tail terminator connector 1 14242 14688
YP_009043798.1 NC_024368_p14 portal protein phrog_104 portal protein head and packaging 1 8806 10248
YP_009043853.1 NC_024368_p69 RecB phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 43119 43922
YP_009043820.1 NC_024368_p36 hypothetical protein phrog_644 unknown function unknown function 1 28129 28449
YP_009043861.1 NC_024368_p77 hypothetical protein phrog_1720 unknown function unknown function -1 47454 47723
YP_009043812.1 NC_024368_p28 minor tail protein phrog_106 minor tail protein tail 1 19455 21512
YP_009043824.1 NC_024368_p40 hypothetical protein phrog_1966 unknown function unknown function -1 31257 31529
YP_009043838.1 NC_024368_p54 hypothetical protein phrog_8843 unknown function unknown function -1 38708 38929
YP_009043797.1 NC_024368_p13 terminase phrog_9 terminase large subunit head and packaging 1 7121 8809
YP_009043808.1 NC_024368_p24 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 15654 16453
YP_009043864.1 NC_024368_p80 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 48108 48275
YP_009043793.1 NC_024368_p9 hypothetical protein phrog_1718 tail protein tail 1 4185 4445
YP_009043823.1 NC_024368_p39 integrase phrog_95 integrase integration and excision 1 29632 31134
YP_009043790.1 NC_024368_p6 hypothetical protein singleton unknown function unknown function 1 2217 2309
YP_009043811.1 NC_024368_p27 HNH domain protein phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism 1 18931 19431
YP_009043840.1 NC_024368_p56 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39293 39808
YP_009043832.1 NC_024368_p48 hypothetical protein phrog_499 unknown function unknown function -1 35044 35226
YP_009043870.1 NC_024368_p86 hypothetical protein phrog_2212 unknown function unknown function -1 49811 49930
YP_009043834.1 NC_024368_p50 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 36031 36171
YP_009043816.1 NC_024368_p32 hypothetical protein phrog_981 minor tail protein tail 1 23996 24343
YP_009043854.1 NC_024368_p70 DNA binding domain protein phrog_4285 transposase integration and excision -1 43919 44629
YP_009043862.1 NC_024368_p78 hypothetical protein phrog_1387 unknown function unknown function -1 47720 47923
YP_009043814.1 NC_024368_p30 minor tail protein phrog_110 minor tail protein tail 1 21713 23515
YP_009043800.1 NC_024368_p16 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 11185 11697
YP_009043835.1 NC_024368_p51 phosphoesterase phrog_221 metallo-phosphoesterase other -1 36176 37894
YP_009043841.1 NC_024368_p57 hypothetical protein phrog_1783 unknown function unknown function -1 39787 39936
YP_009043859.1 NC_024368_p75 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 46384 46896
YP_009043842.1 NC_024368_p58 hypothetical protein singleton unknown function unknown function -1 39951 40016
YP_009043818.1 NC_024368_p34 minor tail protein phrog_346 minor tail protein tail 1 24712 26565
YP_009043795.1 NC_024368_p11 lysin A phrog_317 endolysin lysis 1 4710 6143
YP_009043849.1 NC_024368_p65 hypothetical protein phrog_1705 unknown function unknown function -1 41943 42089
YP_009043822.1 NC_024368_p38 hypothetical protein phrog_553 minor tail protein tail 1 28671 29357
YP_009043858.1 NC_024368_p74 hypothetical protein phrog_1809 unknown function unknown function -1 45947 46351
YP_009043837.1 NC_024368_p53 hypothetical protein phrog_1167 phosphofructokinase other -1 38067 38711
YP_009043845.1 NC_024368_p61 hypothetical protein phrog_1019 unknown function unknown function -1 40622 40708
YP_009043830.1 NC_024368_p46 hypothetical protein phrog_1781 unknown function unknown function -1 34295 34525
YP_009043819.1 NC_024368_p35 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 26558 28036
YP_009043855.1 NC_024368_p71 hypothetical protein phrog_4604 unknown function unknown function -1 44964 45425
YP_009043836.1 NC_024368_p52 hypothetical protein phrog_1503 unknown function unknown function -1 37891 38070
YP_009043857.1 NC_024368_p73 hypothetical protein phrog_1584 unknown function unknown function -1 45633 45950
YP_009043851.1 NC_024368_p67 hypothetical protein phrog_2184 unknown function unknown function -1 42376 42906
YP_009043846.1 NC_024368_p62 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 40705 40971
YP_009043852.1 NC_024368_p68 HTH DNA binding domain protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 42910 43092
YP_009043803.1 NC_024368_p19 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 13032 13481
YP_009043871.1 NC_024368_p87 hypothetical protein phrog_828 unknown function unknown function -1 50011 50214
YP_009043786.1 NC_024368_p2 hypothetical protein phrog_14140 unknown function unknown function 1 902 1093
YP_009043817.1 NC_024368_p33 hypothetical protein phrog_1397 unknown function unknown function 1 24340 24687
YP_009043829.1 NC_024368_p45 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 32429 34258
YP_009043805.1 NC_024368_p21 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 13843 14238
YP_009043850.1 NC_024368_p66 hypothetical protein phrog_520 unknown function unknown function -1 42086 42379
YP_009043844.1 NC_024368_p60 EndoVII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 40147 40635
YP_009043788.1 NC_024368_p4 hypothetical protein phrog_28044 unknown function unknown function 1 1618 1764
YP_009043826.1 NC_024368_p42 hypothetical protein phrog_1860 unknown function unknown function -1 31693 31839
YP_009043815.1 NC_024368_p31 hypothetical protein phrog_352 minor tail protein tail 1 23553 23999
YP_009043843.1 NC_024368_p59 hypothetical protein phrog_397 unknown function unknown function -1 40013 40150
YP_009043813.1 NC_024368_p29 hypothetical protein phrog_1543 minor tail protein tail 1 21531 21713
YP_009043799.1 NC_024368_p15 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10245 11126
YP_009043856.1 NC_024368_p72 hypothetical protein phrog_2730 unknown function unknown function -1 45463 45636
YP_009043804.1 NC_024368_p20 hypothetical protein phrog_320 head closure Hc1 connector 1 13481 13843
YP_009043827.1 NC_024368_p43 hypothetical protein phrog_1971 unknown function unknown function -1 31785 32048
YP_009043785.1 NC_024368_p1 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 535 894
YP_009043863.1 NC_024368_p79 hypothetical protein phrog_1155 unknown function unknown function -1 47920 48108
YP_009043801.1 NC_024368_p17 major capsid protein phrog_10 major head protein head and packaging 1 11707 12717