| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024368 |
Definition |
Mycobacterium phage Pinto, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
50610 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
87 |
%GC |
63.53 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009043847.1 | NC_024368_p63 | hypothetical protein | phrog_6513 | unknown function | unknown function | -1 | 40956 | 41150 |
| YP_009043825.1 | NC_024368_p41 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31526 | 31696 |
| YP_009043867.1 | NC_024368_p83 | hypothetical protein | phrog_6135 | unknown function | unknown function | -1 | 48567 | 48836 |
| YP_009043809.1 | NC_024368_p25 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15654 | 16031 |
| YP_009043833.1 | NC_024368_p49 | sigma-K factor | phrog_354 | sigma-K factor | transcription regulation | -1 | 35223 | 36038 |
| YP_009043831.1 | NC_024368_p47 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34556 | 35047 |
| YP_009043848.1 | NC_024368_p64 | DnaB-like protein | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41147 | 41956 |
| YP_009043789.1 | NC_024368_p5 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1918 | 2148 |
| YP_009043860.1 | NC_024368_p76 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47158 | 47457 |
| YP_009043821.1 | NC_024368_p37 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28459 | 28671 |
| YP_009043868.1 | NC_024368_p84 | hypothetical protein | phrog_16282 | unknown function | unknown function | -1 | 48967 | 49035 |
| YP_009043791.1 | NC_024368_p7 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2390 | 3460 |
| YP_009043802.1 | NC_024368_p18 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12796 | 13032 |
| YP_009043869.1 | NC_024368_p85 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 49108 | 49797 |
| YP_009043839.1 | NC_024368_p55 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38926 | 39447 |
| YP_009043807.1 | NC_024368_p23 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14697 | 15545 |
| YP_009043796.1 | NC_024368_p12 | lysin B | phrog_102 | endolysin | lysis | 1 | 6133 | 7101 |
| YP_009043865.1 | NC_024368_p81 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48272 | 48424 |
| YP_009043810.1 | NC_024368_p26 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 16466 | 18934 |
| YP_009043866.1 | NC_024368_p82 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48421 | 48570 |
| YP_009043794.1 | NC_024368_p10 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4453 | 4710 |
| YP_009043787.1 | NC_024368_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1130 | 1570 |
| YP_009043828.1 | NC_024368_p44 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32045 | 32401 |
| YP_009043792.1 | NC_024368_p8 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3470 | 4171 |
| YP_009043806.1 | NC_024368_p22 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14242 | 14688 |
| YP_009043798.1 | NC_024368_p14 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8806 | 10248 |
| YP_009043853.1 | NC_024368_p69 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43119 | 43922 |
| YP_009043820.1 | NC_024368_p36 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28129 | 28449 |
| YP_009043861.1 | NC_024368_p77 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47454 | 47723 |
| YP_009043812.1 | NC_024368_p28 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19455 | 21512 |
| YP_009043824.1 | NC_024368_p40 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31257 | 31529 |
| YP_009043838.1 | NC_024368_p54 | hypothetical protein | phrog_8843 | unknown function | unknown function | -1 | 38708 | 38929 |
| YP_009043797.1 | NC_024368_p13 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7121 | 8809 |
| YP_009043808.1 | NC_024368_p24 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15654 | 16453 |
| YP_009043864.1 | NC_024368_p80 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48108 | 48275 |
| YP_009043793.1 | NC_024368_p9 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4185 | 4445 |
| YP_009043823.1 | NC_024368_p39 | integrase | phrog_95 | integrase | integration and excision | 1 | 29632 | 31134 |
| YP_009043790.1 | NC_024368_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2217 | 2309 |
| YP_009043811.1 | NC_024368_p27 | HNH domain protein | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 18931 | 19431 |
| YP_009043840.1 | NC_024368_p56 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39293 | 39808 |
| YP_009043832.1 | NC_024368_p48 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35044 | 35226 |
| YP_009043870.1 | NC_024368_p86 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 49811 | 49930 |
| YP_009043834.1 | NC_024368_p50 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36031 | 36171 |
| YP_009043816.1 | NC_024368_p32 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23996 | 24343 |
| YP_009043854.1 | NC_024368_p70 | DNA binding domain protein | phrog_4285 | transposase | integration and excision | -1 | 43919 | 44629 |
| YP_009043862.1 | NC_024368_p78 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47720 | 47923 |
| YP_009043814.1 | NC_024368_p30 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21713 | 23515 |
| YP_009043800.1 | NC_024368_p16 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11185 | 11697 |
| YP_009043835.1 | NC_024368_p51 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 36176 | 37894 |
| YP_009043841.1 | NC_024368_p57 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39787 | 39936 |
| YP_009043859.1 | NC_024368_p75 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46384 | 46896 |
| YP_009043842.1 | NC_024368_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39951 | 40016 |
| YP_009043818.1 | NC_024368_p34 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24712 | 26565 |
| YP_009043795.1 | NC_024368_p11 | lysin A | phrog_317 | endolysin | lysis | 1 | 4710 | 6143 |
| YP_009043849.1 | NC_024368_p65 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 41943 | 42089 |
| YP_009043822.1 | NC_024368_p38 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 28671 | 29357 |
| YP_009043858.1 | NC_024368_p74 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 45947 | 46351 |
| YP_009043837.1 | NC_024368_p53 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38067 | 38711 |
| YP_009043845.1 | NC_024368_p61 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 40622 | 40708 |
| YP_009043830.1 | NC_024368_p46 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34295 | 34525 |
| YP_009043819.1 | NC_024368_p35 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26558 | 28036 |
| YP_009043855.1 | NC_024368_p71 | hypothetical protein | phrog_4604 | unknown function | unknown function | -1 | 44964 | 45425 |
| YP_009043836.1 | NC_024368_p52 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 37891 | 38070 |
| YP_009043857.1 | NC_024368_p73 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45633 | 45950 |
| YP_009043851.1 | NC_024368_p67 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 42376 | 42906 |
| YP_009043846.1 | NC_024368_p62 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 40705 | 40971 |
| YP_009043852.1 | NC_024368_p68 | HTH DNA binding domain protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 42910 | 43092 |
| YP_009043803.1 | NC_024368_p19 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13032 | 13481 |
| YP_009043871.1 | NC_024368_p87 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 50011 | 50214 |
| YP_009043786.1 | NC_024368_p2 | hypothetical protein | phrog_14140 | unknown function | unknown function | 1 | 902 | 1093 |
| YP_009043817.1 | NC_024368_p33 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24340 | 24687 |
| YP_009043829.1 | NC_024368_p45 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32429 | 34258 |
| YP_009043805.1 | NC_024368_p21 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13843 | 14238 |
| YP_009043850.1 | NC_024368_p66 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42086 | 42379 |
| YP_009043844.1 | NC_024368_p60 | EndoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40147 | 40635 |
| YP_009043788.1 | NC_024368_p4 | hypothetical protein | phrog_28044 | unknown function | unknown function | 1 | 1618 | 1764 |
| YP_009043826.1 | NC_024368_p42 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31693 | 31839 |
| YP_009043815.1 | NC_024368_p31 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23553 | 23999 |
| YP_009043843.1 | NC_024368_p59 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40013 | 40150 |
| YP_009043813.1 | NC_024368_p29 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21531 | 21713 |
| YP_009043799.1 | NC_024368_p15 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10245 | 11126 |
| YP_009043856.1 | NC_024368_p72 | hypothetical protein | phrog_2730 | unknown function | unknown function | -1 | 45463 | 45636 |
| YP_009043804.1 | NC_024368_p20 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13481 | 13843 |
| YP_009043827.1 | NC_024368_p43 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31785 | 32048 |
| YP_009043785.1 | NC_024368_p1 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 535 | 894 |
| YP_009043863.1 | NC_024368_p79 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 47920 | 48108 |
| YP_009043801.1 | NC_024368_p17 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11707 | 12717 |