Genomic map of Vibrio phage X29 (NC_024369)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024369
Definition
Vibrio phage X29, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
41569
Host Name
Vibrio cholerae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
67
%GC
46.06
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009043901.1 NC_024369_p39 methyltransferase phrog_954 DNA methyltransferase other 1 26239 26742
YP_009043887.1 NC_024369_p53 hypothetical protein phrog_32122 unknown function unknown function 1 34656 34973
YP_009043912.1 NC_024369_p29 tail protein I phrog_48 tail protein tail 1 19634 20212
YP_009043873.1 NC_024369_p66 hypothetical protein phrog_38861 unknown function unknown function 1 40648 41076
YP_009043937.1 NC_024369_p4 hypothetical protein phrog_19825 unknown function unknown function -1 3242 3388
YP_009043892.1 NC_024369_p48 integrase phrog_1 integrase integration and excision 1 30768 31967
YP_009043872.1 NC_024369_p67 hypothetical protein phrog_26642 unknown function unknown function 1 41076 41339
YP_009043907.1 NC_024369_p33 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis 1 22878 23573
YP_009043900.1 NC_024369_p40 hypothetical protein phrog_22261 unknown function unknown function 1 26739 27134
YP_009043889.1 NC_024369_p51 hypothetical protein phrog_37245 unknown function unknown function 1 33341 33640
YP_009043879.2 NC_024369_p3 terminase large subunit phrog_15 terminase large subunit head and packaging 1 1375 3225
YP_009043929.1 NC_024369_p12 hypothetical protein phrog_390 Arc-like repressor transcription regulation 1 8510 8824
YP_009043909.1 NC_024369_p32 hypothetical protein phrog_37591 unknown function unknown function 1 22469 22783
YP_009043880.1 NC_024369_p60 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 38194 38694
YP_009043939.1 NC_024369_p2 hypothetical protein phrog_57 terminase small subunit head and packaging 1 758 1378
YP_009043886.1 NC_024369_p54 hypothetical protein phrog_631 unknown function unknown function 1 34982 35461
YP_009043891.1 NC_024369_p49 DNA recombination-dependent growth factor C phrog_724 exonuclease recombination-associated DNA, RNA and nucleotide metabolism 1 32053 32964
YP_009043883.1 NC_024369_p57 DNA clamp protein phrog_3007 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 36162 36791
YP_009043884.1 NC_024369_p56 Cro/C1-type HTH DNA-binding domain protein phrog_34300 unknown function unknown function 1 35908 36144
YP_009043878.1 NC_024369_p61 hypothetical protein phrog_38352 unknown function unknown function 1 39175 39357
YP_009043930.1 NC_024369_p11 major capsid E family protein phrog_29 major head protein head and packaging 1 7473 8513
YP_009091831.1 NC_024369_p20 hypothetical protein phrog_3140 tail assembly chaperone tail 1 12760 13202
YP_009043911.1 NC_024369_p30 tail fiber protein phrog_327 tail protein tail 1 20275 21927
YP_009091832.1 NC_024369_p22 tail length tape-measure protein phrog_28 tail length tape measure protein tail 1 13217 15853
YP_009043888.1 NC_024369_p52 exonuclease:ribonuclease T phrog_255 exonuclease DNA, RNA and nucleotide metabolism 1 33650 34582
YP_009043925.1 NC_024369_p16 hypothetical protein phrog_4089 unknown function unknown function 1 10212 10502
YP_009043924.1 NC_024369_p17 tail sheath protein phrog_23 tail sheath tail 1 10502 11971
YP_009043885.1 NC_024369_p55 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 35501 35833
YP_009043881.1 NC_024369_p59 DNA N-6-adenine-methyltransferase phrog_111 DNA methyltransferase other 1 37526 38194
YP_009043875.1 NC_024369_p64 helix-turn-helix domain protein phrog_34308 unknown function unknown function 1 39753 39908
YP_009043923.1 NC_024369_p18 tail tube FII family protein phrog_55 head closure connector 1 11986 12507
YP_009043899.1 NC_024369_p41 helix-turn-helix domain protein phrog_34278 unknown function unknown function 1 27149 27421
YP_009043916.1 NC_024369_p25 baseplate protein phrog_11 baseplate spike tail 1 17087 17818
YP_009043893.1 NC_024369_p47 IstB-like ATP binding protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 29989 30768
YP_009043918.1 NC_024369_p23 hypothetical protein phrog_46 baseplate hub tail 1 15846 16055
YP_009043921.1 NC_024369_p21 hypothetical protein phrog_3140 tail assembly chaperone tail 1 12760 13038
YP_009043890.1 NC_024369_p50 hypothetical protein phrog_29411 unknown function unknown function 1 33008 33331
YP_009043922.1 NC_024369_p19 hypothetical protein phrog_29839 unknown function unknown function 1 12513 12767
YP_009043902.1 NC_024369_p38 integrase family site specific recombinase phrog_1 integrase integration and excision 1 25103 26167
YP_009043934.1 NC_024369_p7 hypothetical protein phrog_118 head-tail adaptor connector 1 4172 4396
YP_009043926.1 NC_024369_p15 hypothetical protein phrog_2581 virion structural protein head and packaging 1 9731 10234
YP_009043936.1 NC_024369_p5 hypothetical protein phrog_35238 unknown function unknown function -1 3372 3695
YP_009043898.1 NC_024369_p42 hypothetical protein phrog_35082 unknown function unknown function 1 27430 27672
YP_009043913.1 NC_024369_p28 baseplate J-like protein phrog_6 baseplate wedge subunit tail 1 18517 19641
YP_009043903.1 NC_024369_p37 prokaryotic membrane lipoprotein lipid attachment site protein phrog_8971 Rz-like spanin lysis 1 24551 24757
YP_009043904.1 NC_024369_p36 hypothetical protein phrog_38586 unknown function unknown function -1 24054 24530
YP_009043910.1 NC_024369_p31 tail fiber assembly-like protein phrog_35518 tail fiber assembly tail 1 21938 22429
YP_009043897.1 NC_024369_p43 helix-turn-helix domain protein phrog_66 excisionase and transcriptional regulator integration and excision 1 27786 27989
YP_009043933.1 NC_024369_p8 portal protein phrog_21 portal protein head and packaging 1 4393 5976
YP_009043940.1 NC_024369_p1 DNA modification methylase phrog_15396 ParB-like partition nuclease DNA, RNA and nucleotide metabolism 1 140 745
YP_009043906.1 NC_024369_p34 hypothetical protein phrog_9685 unknown function unknown function 1 23592 23822
YP_009043935.1 NC_024369_p6 hypothetical protein phrog_19021 unknown function unknown function -1 3698 3922
YP_009043914.1 NC_024369_p27 lysozyme phrog_43 baseplate wedge subunit tail 1 18213 18524
YP_009043915.1 NC_024369_p26 hypothetical protein phrog_76 tail protein tail 1 17827 18213
YP_009043932.1 NC_024369_p9 protease-like protein phrog_53 head maturation protease head and packaging 1 5963 7066
YP_009043927.1 NC_024369_p14 hypothetical protein phrog_27 tail completion or Neck1 protein connector 1 9168 9734
YP_009043894.1 NC_024369_p46 helix-turn-helix domain protein phrog_9773 replication initiation O-like DNA, RNA and nucleotide metabolism 1 29205 30002
YP_009043877.1 NC_024369_p62 hypothetical protein phrog_17261 unknown function unknown function 1 39347 39556
YP_009043882.1 NC_024369_p58 ASCH domain protein phrog_874 unknown function unknown function 1 36812 37516
YP_009043917.1 NC_024369_p24 late control D family protein phrog_52 tail protein tail 1 16056 17084
YP_009043876.1 NC_024369_p63 hypothetical protein phrog_35400 unknown function unknown function 1 39565 39756
YP_009043895.1 NC_024369_p45 antirepressor protein KilAC domain phrog_130 anti-repressor Ant transcription regulation 1 28391 29191
YP_009043931.1 NC_024369_p10 hypothetical protein phrog_49 head decoration head and packaging 1 7080 7454
YP_009043905.1 NC_024369_p35 hypothetical protein phrog_9219 unknown function unknown function 1 23822 23998
YP_009043928.1 NC_024369_p13 hypothetical protein phrog_2551 minor tail protein tail 1 8824 9153
YP_009043874.1 NC_024369_p65 hypothetical protein phrog_19546 unknown function unknown function 1 39899 40276
YP_009043896.1 NC_024369_p44 helix-turn-helix domain protein phrog_3 transcriptional repressor transcription regulation 1 28005 28217