| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024369 |
Definition |
Vibrio phage X29, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae. |
DB of origin |
REFSEQ |
Length |
41569 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
67 |
%GC |
46.06 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009043901.1 | NC_024369_p39 | methyltransferase | phrog_954 | DNA methyltransferase | other | 1 | 26239 | 26742 |
| YP_009043887.1 | NC_024369_p53 | hypothetical protein | phrog_32122 | unknown function | unknown function | 1 | 34656 | 34973 |
| YP_009043912.1 | NC_024369_p29 | tail protein I | phrog_48 | tail protein | tail | 1 | 19634 | 20212 |
| YP_009043873.1 | NC_024369_p66 | hypothetical protein | phrog_38861 | unknown function | unknown function | 1 | 40648 | 41076 |
| YP_009043937.1 | NC_024369_p4 | hypothetical protein | phrog_19825 | unknown function | unknown function | -1 | 3242 | 3388 |
| YP_009043892.1 | NC_024369_p48 | integrase | phrog_1 | integrase | integration and excision | 1 | 30768 | 31967 |
| YP_009043872.1 | NC_024369_p67 | hypothetical protein | phrog_26642 | unknown function | unknown function | 1 | 41076 | 41339 |
| YP_009043907.1 | NC_024369_p33 | N-acetylmuramoyl-L-alanine amidase | phrog_435 | endolysin | lysis | 1 | 22878 | 23573 |
| YP_009043900.1 | NC_024369_p40 | hypothetical protein | phrog_22261 | unknown function | unknown function | 1 | 26739 | 27134 |
| YP_009043889.1 | NC_024369_p51 | hypothetical protein | phrog_37245 | unknown function | unknown function | 1 | 33341 | 33640 |
| YP_009043879.2 | NC_024369_p3 | terminase large subunit | phrog_15 | terminase large subunit | head and packaging | 1 | 1375 | 3225 |
| YP_009043929.1 | NC_024369_p12 | hypothetical protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 8510 | 8824 |
| YP_009043909.1 | NC_024369_p32 | hypothetical protein | phrog_37591 | unknown function | unknown function | 1 | 22469 | 22783 |
| YP_009043880.1 | NC_024369_p60 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 38194 | 38694 |
| YP_009043939.1 | NC_024369_p2 | hypothetical protein | phrog_57 | terminase small subunit | head and packaging | 1 | 758 | 1378 |
| YP_009043886.1 | NC_024369_p54 | hypothetical protein | phrog_631 | unknown function | unknown function | 1 | 34982 | 35461 |
| YP_009043891.1 | NC_024369_p49 | DNA recombination-dependent growth factor C | phrog_724 | exonuclease recombination-associated | DNA, RNA and nucleotide metabolism | 1 | 32053 | 32964 |
| YP_009043883.1 | NC_024369_p57 | DNA clamp protein | phrog_3007 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 36162 | 36791 |
| YP_009043884.1 | NC_024369_p56 | Cro/C1-type HTH DNA-binding domain protein | phrog_34300 | unknown function | unknown function | 1 | 35908 | 36144 |
| YP_009043878.1 | NC_024369_p61 | hypothetical protein | phrog_38352 | unknown function | unknown function | 1 | 39175 | 39357 |
| YP_009043930.1 | NC_024369_p11 | major capsid E family protein | phrog_29 | major head protein | head and packaging | 1 | 7473 | 8513 |
| YP_009091831.1 | NC_024369_p20 | hypothetical protein | phrog_3140 | tail assembly chaperone | tail | 1 | 12760 | 13202 |
| YP_009043911.1 | NC_024369_p30 | tail fiber protein | phrog_327 | tail protein | tail | 1 | 20275 | 21927 |
| YP_009091832.1 | NC_024369_p22 | tail length tape-measure protein | phrog_28 | tail length tape measure protein | tail | 1 | 13217 | 15853 |
| YP_009043888.1 | NC_024369_p52 | exonuclease:ribonuclease T | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 33650 | 34582 |
| YP_009043925.1 | NC_024369_p16 | hypothetical protein | phrog_4089 | unknown function | unknown function | 1 | 10212 | 10502 |
| YP_009043924.1 | NC_024369_p17 | tail sheath protein | phrog_23 | tail sheath | tail | 1 | 10502 | 11971 |
| YP_009043885.1 | NC_024369_p55 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 35501 | 35833 |
| YP_009043881.1 | NC_024369_p59 | DNA N-6-adenine-methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 37526 | 38194 |
| YP_009043875.1 | NC_024369_p64 | helix-turn-helix domain protein | phrog_34308 | unknown function | unknown function | 1 | 39753 | 39908 |
| YP_009043923.1 | NC_024369_p18 | tail tube FII family protein | phrog_55 | head closure | connector | 1 | 11986 | 12507 |
| YP_009043899.1 | NC_024369_p41 | helix-turn-helix domain protein | phrog_34278 | unknown function | unknown function | 1 | 27149 | 27421 |
| YP_009043916.1 | NC_024369_p25 | baseplate protein | phrog_11 | baseplate spike | tail | 1 | 17087 | 17818 |
| YP_009043893.1 | NC_024369_p47 | IstB-like ATP binding protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 29989 | 30768 |
| YP_009043918.1 | NC_024369_p23 | hypothetical protein | phrog_46 | baseplate hub | tail | 1 | 15846 | 16055 |
| YP_009043921.1 | NC_024369_p21 | hypothetical protein | phrog_3140 | tail assembly chaperone | tail | 1 | 12760 | 13038 |
| YP_009043890.1 | NC_024369_p50 | hypothetical protein | phrog_29411 | unknown function | unknown function | 1 | 33008 | 33331 |
| YP_009043922.1 | NC_024369_p19 | hypothetical protein | phrog_29839 | unknown function | unknown function | 1 | 12513 | 12767 |
| YP_009043902.1 | NC_024369_p38 | integrase family site specific recombinase | phrog_1 | integrase | integration and excision | 1 | 25103 | 26167 |
| YP_009043934.1 | NC_024369_p7 | hypothetical protein | phrog_118 | head-tail adaptor | connector | 1 | 4172 | 4396 |
| YP_009043926.1 | NC_024369_p15 | hypothetical protein | phrog_2581 | virion structural protein | head and packaging | 1 | 9731 | 10234 |
| YP_009043936.1 | NC_024369_p5 | hypothetical protein | phrog_35238 | unknown function | unknown function | -1 | 3372 | 3695 |
| YP_009043898.1 | NC_024369_p42 | hypothetical protein | phrog_35082 | unknown function | unknown function | 1 | 27430 | 27672 |
| YP_009043913.1 | NC_024369_p28 | baseplate J-like protein | phrog_6 | baseplate wedge subunit | tail | 1 | 18517 | 19641 |
| YP_009043903.1 | NC_024369_p37 | prokaryotic membrane lipoprotein lipid attachment site protein | phrog_8971 | Rz-like spanin | lysis | 1 | 24551 | 24757 |
| YP_009043904.1 | NC_024369_p36 | hypothetical protein | phrog_38586 | unknown function | unknown function | -1 | 24054 | 24530 |
| YP_009043910.1 | NC_024369_p31 | tail fiber assembly-like protein | phrog_35518 | tail fiber assembly | tail | 1 | 21938 | 22429 |
| YP_009043897.1 | NC_024369_p43 | helix-turn-helix domain protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 27786 | 27989 |
| YP_009043933.1 | NC_024369_p8 | portal protein | phrog_21 | portal protein | head and packaging | 1 | 4393 | 5976 |
| YP_009043940.1 | NC_024369_p1 | DNA modification methylase | phrog_15396 | ParB-like partition nuclease | DNA, RNA and nucleotide metabolism | 1 | 140 | 745 |
| YP_009043906.1 | NC_024369_p34 | hypothetical protein | phrog_9685 | unknown function | unknown function | 1 | 23592 | 23822 |
| YP_009043935.1 | NC_024369_p6 | hypothetical protein | phrog_19021 | unknown function | unknown function | -1 | 3698 | 3922 |
| YP_009043914.1 | NC_024369_p27 | lysozyme | phrog_43 | baseplate wedge subunit | tail | 1 | 18213 | 18524 |
| YP_009043915.1 | NC_024369_p26 | hypothetical protein | phrog_76 | tail protein | tail | 1 | 17827 | 18213 |
| YP_009043932.1 | NC_024369_p9 | protease-like protein | phrog_53 | head maturation protease | head and packaging | 1 | 5963 | 7066 |
| YP_009043927.1 | NC_024369_p14 | hypothetical protein | phrog_27 | tail completion or Neck1 protein | connector | 1 | 9168 | 9734 |
| YP_009043894.1 | NC_024369_p46 | helix-turn-helix domain protein | phrog_9773 | replication initiation O-like | DNA, RNA and nucleotide metabolism | 1 | 29205 | 30002 |
| YP_009043877.1 | NC_024369_p62 | hypothetical protein | phrog_17261 | unknown function | unknown function | 1 | 39347 | 39556 |
| YP_009043882.1 | NC_024369_p58 | ASCH domain protein | phrog_874 | unknown function | unknown function | 1 | 36812 | 37516 |
| YP_009043917.1 | NC_024369_p24 | late control D family protein | phrog_52 | tail protein | tail | 1 | 16056 | 17084 |
| YP_009043876.1 | NC_024369_p63 | hypothetical protein | phrog_35400 | unknown function | unknown function | 1 | 39565 | 39756 |
| YP_009043895.1 | NC_024369_p45 | antirepressor protein KilAC domain | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 28391 | 29191 |
| YP_009043931.1 | NC_024369_p10 | hypothetical protein | phrog_49 | head decoration | head and packaging | 1 | 7080 | 7454 |
| YP_009043905.1 | NC_024369_p35 | hypothetical protein | phrog_9219 | unknown function | unknown function | 1 | 23822 | 23998 |
| YP_009043928.1 | NC_024369_p13 | hypothetical protein | phrog_2551 | minor tail protein | tail | 1 | 8824 | 9153 |
| YP_009043874.1 | NC_024369_p65 | hypothetical protein | phrog_19546 | unknown function | unknown function | 1 | 39899 | 40276 |
| YP_009043896.1 | NC_024369_p44 | helix-turn-helix domain protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 28005 | 28217 |