Genomic map of Streptococcus phage IC1 (NC_024370)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024370
Definition
Streptococcus phage IC1, complete sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
39965
Host Name
Streptococcus pneumoniae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
41.12
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009043948.1 NC_024370_p8 hypothetical protein phrog_2066 unknown function unknown function -1 13426 13776
YP_009043986.1 NC_024370_p46 hypothetical protein phrog_4488 unknown function unknown function -1 36752 36874
YP_009043949.1 NC_024370_p9 hypothetical protein phrog_183 tail chaperone protein tail -1 13815 14195
YP_009043966.1 NC_024370_p26 hypothetical protein phrog_2131 unknown function unknown function -1 26139 26561
YP_009043962.1 NC_024370_p22 Phage terminase small subunit phrog_51 terminase small subunit head and packaging -1 22966 23478
YP_009043944.1 NC_024370_p4 hypothetical protein phrog_1137 unknown function unknown function -1 1871 2074
YP_009043984.1 NC_024370_p44 hypothetical protein singleton unknown function unknown function -1 35496 35630
YP_009043981.1 NC_024370_p41 hypothetical protein phrog_3624 unknown function unknown function -1 34037 34198
YP_009043989.1 NC_024370_p49 Integrase phrog_95 integrase integration and excision 1 38520 39965
YP_009043982.1 NC_024370_p42 hypothetical protein singleton unknown function unknown function -1 34407 34556
YP_009043978.1 NC_024370_p38 hypothetical protein phrog_3819 unknown function unknown function -1 33294 33548
YP_009043977.1 NC_024370_p37 Phage recombination protein phrog_2760 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 32031 32795
YP_009043945.1 NC_024370_p5 PblB-type protein phrog_1210 PblB-type receptor binding other -1 2169 9422
YP_009043963.1 NC_024370_p23 hypothetical protein phrog_36 transcriptional regulator transcription regulation -1 24725 25129
YP_009043969.1 NC_024370_p29 hypothetical protein phrog_834 unknown function unknown function -1 27649 27966
YP_009043953.1 NC_024370_p13 hypothetical protein phrog_2168 unknown function unknown function -1 15471 15773
YP_009043957.1 NC_024370_p17 hypothetical protein phrog_918 unknown function unknown function -1 18100 18351
YP_009043946.1 NC_024370_p6 hypothetical protein phrog_1194 unknown function unknown function -1 9427 9777
YP_009043987.1 NC_024370_p47 hypothetical protein phrog_5570 unknown function unknown function -1 36948 37223
YP_009043952.1 NC_024370_p12 phage neck protein phrog_5 tail completion or Neck1 protein connector -1 14981 15448
YP_009043951.1 NC_024370_p11 hypothetical protein phrog_78 tail terminator connector -1 14616 14984
YP_009043985.1 NC_024370_p45 hypothetical protein phrog_8659 unknown function unknown function -1 35924 36103
YP_009043955.1 NC_024370_p15 carbohydrate-binding protein phrog_422 major head protein head and packaging -1 16301 17326
YP_009043943.1 NC_024370_p3 hypothetical protein phrog_1164 unknown function unknown function -1 1518 1868
YP_009043950.1 NC_024370_p10 major phage tail protein phrog_158 major tail protein tail -1 14200 14613
YP_009043979.1 NC_024370_p39 hypothetical protein phrog_8343 unknown function unknown function -1 33561 33815
YP_009043967.1 NC_024370_p27 hypothetical protein phrog_4252 unknown function unknown function -1 26815 26937
YP_009043972.1 NC_024370_p32 Cytosine specific DNA methyltransferase phrog_954 DNA methyltransferase other -1 29135 29641
YP_009043976.1 NC_024370_p36 hypothetical protein phrog_674 unknown function unknown function -1 30981 32021
YP_009043961.1 NC_024370_p21 Phage terminase large subunit phrog_2 terminase large subunit head and packaging -1 21690 22988
YP_009043983.1 NC_024370_p43 hypothetical protein phrog_1456 DNA binding protein DNA, RNA and nucleotide metabolism -1 35051 35332
YP_009043956.1 NC_024370_p16 phage scaffold protein phrog_172 head scaffolding protein head and packaging -1 17349 17873
YP_009043954.1 NC_024370_p14 hypothetical protein phrog_933 unknown function unknown function -1 16103 16291
YP_009043970.1 NC_024370_p30 phage Holliday junction resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 28189 28479
YP_009043941.1 NC_024370_p1 lytic amidase phrog_1110 endolysin lysis -1 1 957
YP_009043975.1 NC_024370_p35 hypothetical protein phrog_4027 unknown function unknown function -1 30490 30978
YP_009043980.1 NC_024370_p40 hypothetical protein phrog_2648 unknown function unknown function -1 33816 34037
YP_009043960.1 NC_024370_p20 Phage portal protein phrog_64 portal protein head and packaging -1 20209 21510
YP_009043958.1 NC_024370_p18 hypothetical protein phrog_419 unknown function unknown function -1 18353 18598
YP_009043973.1 NC_024370_p33 Single stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 29651 30067
YP_009043965.1 NC_024370_p25 YopX domain protein phrog_98 unknown function unknown function -1 25711 26085
YP_009043964.1 NC_024370_p24 hypothetical protein phrog_2275 unknown function unknown function -1 25204 25518
YP_009043947.1 NC_024370_p7 TMP domain-containing protein phrog_1535 tail length tape measure protein tail -1 9786 13439
YP_009043988.1 NC_024370_p48 phage repressor protein phrog_4 transcriptional repressor transcription regulation 1 37384 38136
YP_009043968.1 NC_024370_p28 hypothetical protein phrog_121 unknown function unknown function -1 26976 27662
YP_009043959.1 NC_024370_p19 phage head morphogenesis protein phrog_2841 minor head protein head and packaging -1 18750 20246
YP_009043942.1 NC_024370_p2 Holin phrog_608 holin lysis -1 966 1298
YP_009043971.1 NC_024370_p31 hypothetical protein phrog_1341 unknown function unknown function -1 28617 28946
YP_009043974.1 NC_024370_p34 hypothetical protein phrog_5262 unknown function unknown function -1 30064 30180