| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024370 |
Definition |
Streptococcus phage IC1, complete sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
39965 |
Host Name |
Streptococcus pneumoniae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
41.12 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009043948.1 | NC_024370_p8 | hypothetical protein | phrog_2066 | unknown function | unknown function | -1 | 13426 | 13776 |
| YP_009043986.1 | NC_024370_p46 | hypothetical protein | phrog_4488 | unknown function | unknown function | -1 | 36752 | 36874 |
| YP_009043949.1 | NC_024370_p9 | hypothetical protein | phrog_183 | tail chaperone protein | tail | -1 | 13815 | 14195 |
| YP_009043966.1 | NC_024370_p26 | hypothetical protein | phrog_2131 | unknown function | unknown function | -1 | 26139 | 26561 |
| YP_009043962.1 | NC_024370_p22 | Phage terminase small subunit | phrog_51 | terminase small subunit | head and packaging | -1 | 22966 | 23478 |
| YP_009043944.1 | NC_024370_p4 | hypothetical protein | phrog_1137 | unknown function | unknown function | -1 | 1871 | 2074 |
| YP_009043984.1 | NC_024370_p44 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35496 | 35630 |
| YP_009043981.1 | NC_024370_p41 | hypothetical protein | phrog_3624 | unknown function | unknown function | -1 | 34037 | 34198 |
| YP_009043989.1 | NC_024370_p49 | Integrase | phrog_95 | integrase | integration and excision | 1 | 38520 | 39965 |
| YP_009043982.1 | NC_024370_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34407 | 34556 |
| YP_009043978.1 | NC_024370_p38 | hypothetical protein | phrog_3819 | unknown function | unknown function | -1 | 33294 | 33548 |
| YP_009043977.1 | NC_024370_p37 | Phage recombination protein | phrog_2760 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 32031 | 32795 |
| YP_009043945.1 | NC_024370_p5 | PblB-type protein | phrog_1210 | PblB-type receptor binding | other | -1 | 2169 | 9422 |
| YP_009043963.1 | NC_024370_p23 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | -1 | 24725 | 25129 |
| YP_009043969.1 | NC_024370_p29 | hypothetical protein | phrog_834 | unknown function | unknown function | -1 | 27649 | 27966 |
| YP_009043953.1 | NC_024370_p13 | hypothetical protein | phrog_2168 | unknown function | unknown function | -1 | 15471 | 15773 |
| YP_009043957.1 | NC_024370_p17 | hypothetical protein | phrog_918 | unknown function | unknown function | -1 | 18100 | 18351 |
| YP_009043946.1 | NC_024370_p6 | hypothetical protein | phrog_1194 | unknown function | unknown function | -1 | 9427 | 9777 |
| YP_009043987.1 | NC_024370_p47 | hypothetical protein | phrog_5570 | unknown function | unknown function | -1 | 36948 | 37223 |
| YP_009043952.1 | NC_024370_p12 | phage neck protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 14981 | 15448 |
| YP_009043951.1 | NC_024370_p11 | hypothetical protein | phrog_78 | tail terminator | connector | -1 | 14616 | 14984 |
| YP_009043985.1 | NC_024370_p45 | hypothetical protein | phrog_8659 | unknown function | unknown function | -1 | 35924 | 36103 |
| YP_009043955.1 | NC_024370_p15 | carbohydrate-binding protein | phrog_422 | major head protein | head and packaging | -1 | 16301 | 17326 |
| YP_009043943.1 | NC_024370_p3 | hypothetical protein | phrog_1164 | unknown function | unknown function | -1 | 1518 | 1868 |
| YP_009043950.1 | NC_024370_p10 | major phage tail protein | phrog_158 | major tail protein | tail | -1 | 14200 | 14613 |
| YP_009043979.1 | NC_024370_p39 | hypothetical protein | phrog_8343 | unknown function | unknown function | -1 | 33561 | 33815 |
| YP_009043967.1 | NC_024370_p27 | hypothetical protein | phrog_4252 | unknown function | unknown function | -1 | 26815 | 26937 |
| YP_009043972.1 | NC_024370_p32 | Cytosine specific DNA methyltransferase | phrog_954 | DNA methyltransferase | other | -1 | 29135 | 29641 |
| YP_009043976.1 | NC_024370_p36 | hypothetical protein | phrog_674 | unknown function | unknown function | -1 | 30981 | 32021 |
| YP_009043961.1 | NC_024370_p21 | Phage terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 21690 | 22988 |
| YP_009043983.1 | NC_024370_p43 | hypothetical protein | phrog_1456 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 35051 | 35332 |
| YP_009043956.1 | NC_024370_p16 | phage scaffold protein | phrog_172 | head scaffolding protein | head and packaging | -1 | 17349 | 17873 |
| YP_009043954.1 | NC_024370_p14 | hypothetical protein | phrog_933 | unknown function | unknown function | -1 | 16103 | 16291 |
| YP_009043970.1 | NC_024370_p30 | phage Holliday junction resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 28189 | 28479 |
| YP_009043941.1 | NC_024370_p1 | lytic amidase | phrog_1110 | endolysin | lysis | -1 | 1 | 957 |
| YP_009043975.1 | NC_024370_p35 | hypothetical protein | phrog_4027 | unknown function | unknown function | -1 | 30490 | 30978 |
| YP_009043980.1 | NC_024370_p40 | hypothetical protein | phrog_2648 | unknown function | unknown function | -1 | 33816 | 34037 |
| YP_009043960.1 | NC_024370_p20 | Phage portal protein | phrog_64 | portal protein | head and packaging | -1 | 20209 | 21510 |
| YP_009043958.1 | NC_024370_p18 | hypothetical protein | phrog_419 | unknown function | unknown function | -1 | 18353 | 18598 |
| YP_009043973.1 | NC_024370_p33 | Single stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 29651 | 30067 |
| YP_009043965.1 | NC_024370_p25 | YopX domain protein | phrog_98 | unknown function | unknown function | -1 | 25711 | 26085 |
| YP_009043964.1 | NC_024370_p24 | hypothetical protein | phrog_2275 | unknown function | unknown function | -1 | 25204 | 25518 |
| YP_009043947.1 | NC_024370_p7 | TMP domain-containing protein | phrog_1535 | tail length tape measure protein | tail | -1 | 9786 | 13439 |
| YP_009043988.1 | NC_024370_p48 | phage repressor protein | phrog_4 | transcriptional repressor | transcription regulation | 1 | 37384 | 38136 |
| YP_009043968.1 | NC_024370_p28 | hypothetical protein | phrog_121 | unknown function | unknown function | -1 | 26976 | 27662 |
| YP_009043959.1 | NC_024370_p19 | phage head morphogenesis protein | phrog_2841 | minor head protein | head and packaging | -1 | 18750 | 20246 |
| YP_009043942.1 | NC_024370_p2 | Holin | phrog_608 | holin | lysis | -1 | 966 | 1298 |
| YP_009043971.1 | NC_024370_p31 | hypothetical protein | phrog_1341 | unknown function | unknown function | -1 | 28617 | 28946 |
| YP_009043974.1 | NC_024370_p34 | hypothetical protein | phrog_5262 | unknown function | unknown function | -1 | 30064 | 30180 |