Genomic map of Escherichia phage PE3-1 (NC_024379)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024379
Definition
Escherichia phage PE3-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Kayfunavirus; Escherichia virus PE3-1.
DB of origin
REFSEQ
Length
39093
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
48
%GC
49.92
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009044294.1 NC_024379_p46 hypothetical protein phrog_1327 Rz-like spanin lysis 1 36335 36736
YP_009044272.1 NC_024379_p24 hypothetical protein phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 13963 16134
YP_009044296.1 NC_024379_p48 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 38510 39052
YP_009044262.1 NC_024379_p14 hypothetical protein phrog_4472 nucleotide kinase other 1 8444 8764
YP_009044250.1 NC_024379_p2 hypothetical protein phrog_2568 ocr-like anti-restriction moron, auxiliary metabolic gene and host takeover 1 1472 1804
YP_009044264.1 NC_024379_p16 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 9059 9754
YP_009044275.1 NC_024379_p27 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 16636 17502
YP_009044265.1 NC_024379_p17 HNH endonuclease singleton unknown function unknown function 1 10007 10204
YP_009044292.1 NC_024379_p44 hypothetical protein phrog_920 holin lysis 1 35731 35925
YP_009044287.1 NC_024379_p39 internal virion protein phrog_308 internal virion protein head and packaging 1 26179 26649
YP_009044278.1 NC_024379_p30 hypothetical protein phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18265 18633
YP_009044269.1 NC_024379_p21 hypothetical protein phrog_1950 unknown function unknown function 1 11580 11795
YP_009044288.1 NC_024379_p40 hypothetical protein phrog_805 internal virion protein head and packaging 1 26658 27221
YP_009044295.1 NC_024379_p47 hypothetical protein phrog_38 terminase large subunit head and packaging 1 36766 38493
YP_009044254.1 NC_024379_p6 hypothetical protein phrog_7066 unknown function unknown function 1 2476 2868
YP_009044289.1 NC_024379_p41 internal virion protein phrog_1339 internal virion protein head and packaging 1 27233 29515
YP_009044276.1 NC_024379_p28 hypothetical protein phrog_1447 unknown function unknown function 1 17713 17985
YP_009044252.1 NC_024379_p4 hypothetical protein phrog_7319 unknown function unknown function 1 2022 2189
YP_009044285.1 NC_024379_p37 hypothetical protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 23508 23735
YP_009044277.1 NC_024379_p29 hypothetical protein phrog_1391 unknown function unknown function 1 18000 18224
YP_009044251.1 NC_024379_p3 hypothetical protein phrog_5058 unknown function unknown function 1 1801 1953
YP_009044266.1 NC_024379_p18 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 10188 10637
YP_009044286.1 NC_024379_p38 tail tube phrog_457 tail protein tail 1 23745 26102
YP_009044282.1 NC_024379_p34 hypothetical protein phrog_267 major head protein head and packaging 1 21571 22620
YP_009044290.1 NC_024379_p42 hypothetical protein phrog_342 internal virion protein with endolysin domain head and packaging 1 29520 33407
YP_009044261.1 NC_024379_p13 hypothetical protein phrog_1777 unknown function unknown function 1 8071 8331
YP_009044256.1 NC_024379_p8 hypothetical protein phrog_8082 unknown function unknown function 1 5660 5875
YP_009044273.1 NC_024379_p25 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 16134 16433
YP_009044257.1 NC_024379_p9 hypothetical protein phrog_4383 unknown function unknown function 1 6044 6223
YP_009044283.1 NC_024379_p35 hypothetical protein phrog_7473 unknown function unknown function 1 22620 22883
YP_009044280.1 NC_024379_p32 hypothetical protein phrog_449 head-tail adaptor connector 1 18886 20454
YP_009044255.1 NC_024379_p7 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 2966 5647
YP_009044291.1 NC_024379_p43 lyase singleton unknown function unknown function 1 33473 35659
YP_009044284.1 NC_024379_p36 tail tube phrog_446 tail protein tail 1 22942 23508
YP_009044267.1 NC_024379_p19 hypothetical protein phrog_16385 unknown function unknown function 1 10637 11107
YP_009044271.1 NC_024379_p23 hypothetical protein phrog_13039 unknown function unknown function 1 13735 13899
YP_009044293.1 NC_024379_p45 hypothetical protein phrog_1351 terminase small subunit head and packaging 1 35922 36185
YP_009044268.1 NC_024379_p20 hypothetical protein phrog_822 amidase lysis 1 11097 11555
YP_009044253.1 NC_024379_p5 hypothetical protein phrog_2385 unknown function unknown function 1 2279 2476
YP_009044263.1 NC_024379_p15 host RNAP inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 8825 9001
YP_009044274.1 NC_024379_p26 hypothetical protein phrog_1334 unknown function unknown function 1 16430 16639
YP_009044259.1 NC_024379_p11 ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 6531 7553
YP_009044270.1 NC_024379_p22 hypothetical protein phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 11992 13692
YP_009044249.1 NC_024379_p1 hypothetical protein phrog_2193 unknown function unknown function 1 142 300
YP_009044279.1 NC_024379_p31 hypothetical protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18626 18874
YP_009044281.1 NC_024379_p33 scaffold protein phrog_1052 head assembly head and packaging 1 20560 21444
YP_009044258.1 NC_024379_p10 hypothetical protein phrog_2949 dGTPase inhibitor; target for F exclusion other 1 6226 6513
YP_009044260.1 NC_024379_p12 hypothetical protein singleton unknown function unknown function 1 7711 7944