| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024379 |
Definition |
Escherichia phage PE3-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Kayfunavirus; Escherichia virus PE3-1. |
DB of origin |
REFSEQ |
Length |
39093 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
49.92 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009044294.1 | NC_024379_p46 | hypothetical protein | phrog_1327 | Rz-like spanin | lysis | 1 | 36335 | 36736 |
| YP_009044272.1 | NC_024379_p24 | hypothetical protein | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13963 | 16134 |
| YP_009044296.1 | NC_024379_p48 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 38510 | 39052 |
| YP_009044262.1 | NC_024379_p14 | hypothetical protein | phrog_4472 | nucleotide kinase | other | 1 | 8444 | 8764 |
| YP_009044250.1 | NC_024379_p2 | hypothetical protein | phrog_2568 | ocr-like anti-restriction | moron, auxiliary metabolic gene and host takeover | 1 | 1472 | 1804 |
| YP_009044264.1 | NC_024379_p16 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 9059 | 9754 |
| YP_009044275.1 | NC_024379_p27 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16636 | 17502 |
| YP_009044265.1 | NC_024379_p17 | HNH endonuclease | singleton | unknown function | unknown function | 1 | 10007 | 10204 |
| YP_009044292.1 | NC_024379_p44 | hypothetical protein | phrog_920 | holin | lysis | 1 | 35731 | 35925 |
| YP_009044287.1 | NC_024379_p39 | internal virion protein | phrog_308 | internal virion protein | head and packaging | 1 | 26179 | 26649 |
| YP_009044278.1 | NC_024379_p30 | hypothetical protein | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18265 | 18633 |
| YP_009044269.1 | NC_024379_p21 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 11580 | 11795 |
| YP_009044288.1 | NC_024379_p40 | hypothetical protein | phrog_805 | internal virion protein | head and packaging | 1 | 26658 | 27221 |
| YP_009044295.1 | NC_024379_p47 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | 1 | 36766 | 38493 |
| YP_009044254.1 | NC_024379_p6 | hypothetical protein | phrog_7066 | unknown function | unknown function | 1 | 2476 | 2868 |
| YP_009044289.1 | NC_024379_p41 | internal virion protein | phrog_1339 | internal virion protein | head and packaging | 1 | 27233 | 29515 |
| YP_009044276.1 | NC_024379_p28 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 17713 | 17985 |
| YP_009044252.1 | NC_024379_p4 | hypothetical protein | phrog_7319 | unknown function | unknown function | 1 | 2022 | 2189 |
| YP_009044285.1 | NC_024379_p37 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 23508 | 23735 |
| YP_009044277.1 | NC_024379_p29 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 18000 | 18224 |
| YP_009044251.1 | NC_024379_p3 | hypothetical protein | phrog_5058 | unknown function | unknown function | 1 | 1801 | 1953 |
| YP_009044266.1 | NC_024379_p18 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10188 | 10637 |
| YP_009044286.1 | NC_024379_p38 | tail tube | phrog_457 | tail protein | tail | 1 | 23745 | 26102 |
| YP_009044282.1 | NC_024379_p34 | hypothetical protein | phrog_267 | major head protein | head and packaging | 1 | 21571 | 22620 |
| YP_009044290.1 | NC_024379_p42 | hypothetical protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29520 | 33407 |
| YP_009044261.1 | NC_024379_p13 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 8071 | 8331 |
| YP_009044256.1 | NC_024379_p8 | hypothetical protein | phrog_8082 | unknown function | unknown function | 1 | 5660 | 5875 |
| YP_009044273.1 | NC_024379_p25 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 16134 | 16433 |
| YP_009044257.1 | NC_024379_p9 | hypothetical protein | phrog_4383 | unknown function | unknown function | 1 | 6044 | 6223 |
| YP_009044283.1 | NC_024379_p35 | hypothetical protein | phrog_7473 | unknown function | unknown function | 1 | 22620 | 22883 |
| YP_009044280.1 | NC_024379_p32 | hypothetical protein | phrog_449 | head-tail adaptor | connector | 1 | 18886 | 20454 |
| YP_009044255.1 | NC_024379_p7 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 2966 | 5647 |
| YP_009044291.1 | NC_024379_p43 | lyase | singleton | unknown function | unknown function | 1 | 33473 | 35659 |
| YP_009044284.1 | NC_024379_p36 | tail tube | phrog_446 | tail protein | tail | 1 | 22942 | 23508 |
| YP_009044267.1 | NC_024379_p19 | hypothetical protein | phrog_16385 | unknown function | unknown function | 1 | 10637 | 11107 |
| YP_009044271.1 | NC_024379_p23 | hypothetical protein | phrog_13039 | unknown function | unknown function | 1 | 13735 | 13899 |
| YP_009044293.1 | NC_024379_p45 | hypothetical protein | phrog_1351 | terminase small subunit | head and packaging | 1 | 35922 | 36185 |
| YP_009044268.1 | NC_024379_p20 | hypothetical protein | phrog_822 | amidase | lysis | 1 | 11097 | 11555 |
| YP_009044253.1 | NC_024379_p5 | hypothetical protein | phrog_2385 | unknown function | unknown function | 1 | 2279 | 2476 |
| YP_009044263.1 | NC_024379_p15 | host RNAP inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 8825 | 9001 |
| YP_009044274.1 | NC_024379_p26 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 16430 | 16639 |
| YP_009044259.1 | NC_024379_p11 | ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 6531 | 7553 |
| YP_009044270.1 | NC_024379_p22 | hypothetical protein | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11992 | 13692 |
| YP_009044249.1 | NC_024379_p1 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 142 | 300 |
| YP_009044279.1 | NC_024379_p31 | hypothetical protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18626 | 18874 |
| YP_009044281.1 | NC_024379_p33 | scaffold protein | phrog_1052 | head assembly | head and packaging | 1 | 20560 | 21444 |
| YP_009044258.1 | NC_024379_p10 | hypothetical protein | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 6226 | 6513 |
| YP_009044260.1 | NC_024379_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7711 | 7944 |