Genomic map of Pseudomonas phage vB_PaeS_SCH_Ab26 (NC_024381)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024381
Definition
Pseudomonas phage vB_PaeS_SCH_Ab26, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Septimatrevirus.
DB of origin
REFSEQ
Length
43056
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
53.42
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009044378.1 NC_024381_p43 hypothetical protein phrog_54 DksA-like zinc-finger protein other 1 38831 39055
YP_009044373.1 NC_024381_p38 hypothetical protein phrog_9154 unknown function unknown function 1 36797 37030
YP_009044386.1 NC_024381_p51 hypothetical protein phrog_6168 unknown function unknown function 1 41980 42264
YP_009044364.1 NC_024381_p29 RecB exonuclease phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism -1 28758 29855
YP_009044385.1 NC_024381_p50 hypothetical protein singleton unknown function unknown function 1 41757 42020
YP_009044368.1 NC_024381_p33 MazG phrog_229 MazG-like pyrophosphatase other -1 32421 32978
YP_009044356.1 NC_024381_p21 virion protein phrog_687 structural protein head and packaging 1 16791 17753
YP_009044370.1 NC_024381_p35 replicative primase/helicase phrog_3022 DNA primase DNA, RNA and nucleotide metabolism 1 33273 35615
YP_009044336.1 NC_024381_p1 holin phrog_1356 holin lysis 1 299 565
YP_009044349.1 NC_024381_p14 virion protein phrog_161 head closure Hc1 connector 1 9530 9910
YP_009044345.1 NC_024381_p10 major capsid protein phrog_247 major head protein head and packaging 1 7122 8096
YP_009044377.1 NC_024381_p42 hypothetical protein phrog_11401 unknown function unknown function 1 38396 38770
YP_009044369.1 NC_024381_p34 hypothetical protein phrog_13059 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 33098 33304
YP_009044342.1 NC_024381_p7 portal protein phrog_145 portal protein head and packaging 1 3722 5254
YP_009044344.1 NC_024381_p9 scaffold protein phrog_206 head scaffolding protein head and packaging 1 6400 7119
YP_009044379.1 NC_024381_p44 hypothetical protein phrog_824 unknown function unknown function 1 39052 39597
YP_009044367.1 NC_024381_p32 hypothetical protein phrog_2480 unknown function unknown function -1 31904 32620
YP_009044383.1 NC_024381_p48 dCMP deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 41163 41630
YP_009044360.1 NC_024381_p25 central tail hub phrog_1101 tail protein tail 1 21202 23643
YP_009044361.1 NC_024381_p26 DNA polymerase phrog_1252 DNA polymerase DNA, RNA and nucleotide metabolism -1 23644 25695
YP_009044357.1 NC_024381_p22 virion protein phrog_687 structural protein head and packaging 1 17537 18664
YP_009044380.1 NC_024381_p45 hypothetical protein phrog_8564 unknown function unknown function 1 39405 39800
YP_009044351.1 NC_024381_p16 major tail tube protein phrog_290 minor tail protein tail 1 10375 11910
YP_009044372.1 NC_024381_p37 hypothetical protein singleton unknown function unknown function -1 36130 36600
YP_009044365.1 NC_024381_p30 member of DUF669 phage protein family phrog_6015 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 30367 31074
YP_009044382.1 NC_024381_p47 hypothetical protein phrog_9844 unknown function unknown function 1 40627 40869
YP_009044355.1 NC_024381_p20 tape measure protein phrog_3336 tail length tape measure protein tail 1 13176 16790
YP_009044341.1 NC_024381_p6 large terminase subunit phrog_2 terminase large subunit head and packaging 1 2143 3738
YP_009044371.1 NC_024381_p36 hypothetical protein phrog_22782 unknown function unknown function 1 35766 36035
YP_009044359.1 NC_024381_p24 virion protein phrog_778 tail assembly protein tail 1 20374 21198
YP_009044348.1 NC_024381_p13 virion protein phrog_477 head-tail adaptor Ad1 connector 1 9008 9526
YP_009044384.1 NC_024381_p49 hypothetical protein phrog_9241 unknown function unknown function 1 41609 41998
YP_009044337.1 NC_024381_p2 endolysin phrog_1259 baseplate hub subunit and tail lysozyme tail 1 489 1103
YP_009044366.1 NC_024381_p31 RecA phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 31133 31849
YP_009044353.1 NC_024381_p18 tail chaperonin phrog_3817 tail chaperonin tail 1 12411 12767
YP_009044346.1 NC_024381_p11 hypothetical protein phrog_9062 unknown function unknown function 1 8166 8558
YP_009044343.1 NC_024381_p8 F-like head morphogenesis protein phrog_241 head morphogenesis head and packaging 1 5269 6363
YP_009044387.1 NC_024381_p52 hypothetical protein phrog_7597 unknown function unknown function 1 42348 42920
YP_009044376.1 NC_024381_p41 hypothetical protein phrog_10560 unknown function unknown function 1 37800 38042
YP_009044381.1 NC_024381_p46 hypothetical protein phrog_14614 endolysin lysis 1 40263 40643
YP_009044350.1 NC_024381_p15 virion protein phrog_179 tail terminator connector 1 9907 10362
YP_009044363.1 NC_024381_p28 DEAD box helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 27110 28774
YP_009044354.1 NC_024381_p19 tail completion protein phrog_169 tail completion or Neck1 protein connector 1 12736 13170
YP_009044352.1 NC_024381_p17 tail chaperonin phrog_313 Tail assembly chaperone tail 1 11974 12402
YP_009044339.1 NC_024381_p4 Rz1 phrog_1275 Rz-like spanin lysis 1 1335 1616
YP_009044340.1 NC_024381_p5 possible small terminase subunit phrog_5334 terminase small subunit head and packaging 1 1674 2162
YP_009044375.1 NC_024381_p40 hypothetical protein phrog_20489 unknown function unknown function 1 37622 37825
YP_009044362.1 NC_024381_p27 replicative clamp phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 25707 26870
YP_009044358.1 NC_024381_p23 virion protein phrog_1082 tail assembly protein tail 1 18668 20374
YP_009044338.1 NC_024381_p3 Rz phrog_1026 Rz-like spanin lysis 1 1115 1420
YP_009044374.1 NC_024381_p39 hypothetical protein phrog_10287 unknown function unknown function 1 37374 37649
YP_009044347.1 NC_024381_p12 virion protein phrog_10405 virion structural protein head and packaging 1 8624 8995