Genomic map of Listeria phage LP-030-3 (NC_024384)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024384
Definition
Listeria phage LP-030-3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
41156
Host Name
Listeria monocytogenes
Host domain
Bacteria
Is prophage?
undef
Number of proteins
73
%GC
36.55
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009044668.1 NC_024384_p22 hypothetical protein phrog_11352 unknown function unknown function 1 6580 6744
YP_009044705.1 NC_024384_p59 Cro-like repressor phrog_3 transcriptional repressor transcription regulation 1 35221 35463
YP_009044706.1 NC_024384_p60 hypothetical protein phrog_5868 unknown function unknown function 1 35467 35733
YP_009044672.1 NC_024384_p26 terminase small subunit phrog_51 terminase small subunit head and packaging 1 8445 8987
YP_009044704.1 NC_024384_p58 C1-like repressor phrog_8 transcriptional regulator transcription regulation -1 34790 35095
YP_009044652.1 NC_024384_p6 hypothetical protein phrog_20345 unknown function unknown function 1 1907 2116
YP_009044682.1 NC_024384_p36 major tail shaft protein phrog_820 major tail protein tail 1 16138 16575
YP_009044656.1 NC_024384_p10 hypothetical protein phrog_11760 unknown function unknown function 1 3325 3498
YP_009044696.1 NC_024384_p50 DUF3800 domain-containing protein phrog_9243 unknown function unknown function 1 29458 30159
YP_009044686.1 NC_024384_p40 tail tape measure protein phrog_1686 tail length tape measure protein tail 1 17934 23300
YP_009044690.1 NC_024384_p44 DUF2479 domain-containing protein phrog_3285 minor tail protein tail 1 26184 27251
YP_009044650.1 NC_024384_p4 hypothetical protein phrog_4074 unknown function unknown function 1 1310 1597
YP_009044670.1 NC_024384_p24 hypothetical protein phrog_8187 unknown function unknown function 1 7561 8121
YP_009044700.1 NC_024384_p54 Ig-like domain-containing protein phrog_11062 unknown function unknown function -1 32525 33265
YP_009044715.1 NC_024384_p69 hypothetical protein phrog_5174 unknown function unknown function 1 38803 38991
YP_009044707.1 NC_024384_p61 hypothetical protein phrog_6150 unknown function unknown function 1 35958 36152
YP_009044719.1 NC_024384_p73 single-stranded DNA-binding protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 39969 40667
YP_009044683.1 NC_024384_p37 Ig-like domain-containing protein phrog_215 structural protein with Ig domain head and packaging 1 16544 16837
YP_009044713.1 NC_024384_p67 hypothetical protein phrog_1124 transcriptional regulator transcription regulation 1 38071 38595
YP_009044648.1 NC_024384_p2 IstB-like ATP-binding protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 325 1131
YP_009044674.1 NC_024384_p28 portal protein phrog_533 portal protein head and packaging 1 10345 11799
YP_009044663.1 NC_024384_p17 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 5020 5502
YP_009044701.1 NC_024384_p55 cobalt ABC transporter domain-containing protein phrog_9828 unknown function unknown function -1 33287 34009
YP_009044675.1 NC_024384_p29 minor capsid protein phrog_581 minor head protein head and packaging 1 11805 12944
YP_009044717.1 NC_024384_p71 hypothetical protein phrog_11613 unknown function unknown function 1 39296 39490
YP_009044685.1 NC_024384_p39 hypothetical protein phrog_706 unknown function unknown function 1 17318 17923
YP_009044693.1 NC_024384_p47 hypothetical protein phrog_3999 unknown function unknown function 1 27777 28082
YP_009044658.1 NC_024384_p12 hypothetical protein phrog_6964 unknown function unknown function 1 3698 3988
YP_009044651.1 NC_024384_p5 hypothetical protein phrog_9484 unknown function unknown function 1 1626 1910
YP_009044671.1 NC_024384_p25 hypothetical protein phrog_4960 unknown function unknown function 1 8218 8403
YP_009044662.1 NC_024384_p16 hypothetical protein phrog_5780 unknown function unknown function 1 4622 5023
YP_009044654.1 NC_024384_p8 hypothetical protein phrog_24824 unknown function unknown function 1 2718 2894
YP_009044680.1 NC_024384_p34 minor capsid protein phrog_556 minor head protein head and packaging 1 15390 15728
YP_009044664.1 NC_024384_p18 hypothetical protein phrog_6184 unknown function unknown function 1 5523 5714
YP_009044718.1 NC_024384_p72 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 39487 39963
YP_009044694.1 NC_024384_p48 holin phrog_297 holin lysis 1 28082 28363
YP_009044655.1 NC_024384_p9 YopX-like protein phrog_8684 unknown function unknown function 1 2881 3324
YP_009044681.1 NC_024384_p35 minor capsid protein phrog_913 minor head protein head and packaging 1 15728 16135
YP_009044691.1 NC_024384_p45 hypothetical protein phrog_1766 tail fiber protein tail 1 27248 27589
YP_009044697.1 NC_024384_p51 hypothetical protein phrog_4945 unknown function unknown function 1 30572 30805
YP_009044710.1 NC_024384_p64 hypothetical protein phrog_7246 unknown function unknown function 1 36710 36871
YP_009044657.1 NC_024384_p11 hypothetical protein phrog_11379 unknown function unknown function 1 3495 3701
YP_009044687.1 NC_024384_p41 tail component protein phrog_33 distal tail protein Dit tail 1 23297 24124
YP_009044667.1 NC_024384_p21 hypothetical protein phrog_7279 unknown function unknown function 1 6443 6568
YP_009044676.1 NC_024384_p30 structural protein phrog_194 head scaffolding protein head and packaging 1 13023 13613
YP_009044716.1 NC_024384_p70 hypothetical protein phrog_21539 unknown function unknown function 1 39073 39201
YP_009044711.1 NC_024384_p65 hypothetical protein phrog_10029 unknown function unknown function -1 36864 37106
YP_009044702.1 NC_024384_p56 zinc-ribbon domain-containing protein phrog_6586 unknown function unknown function -1 34025 34243
YP_009044703.1 NC_024384_p57 DUF955 domain-containing protein phrog_87 metallo-protease other -1 34266 34757
YP_009044684.1 NC_024384_p38 hypothetical protein phrog_1061 unknown function unknown function 1 16890 17312
YP_009044714.1 NC_024384_p68 winged helix-turn-helix DNA-binding domain-containing protein phrog_66 excisionase and transcriptional regulator integration and excision 1 38602 38787
YP_009044699.1 NC_024384_p53 integrase phrog_1 integrase integration and excision -1 31257 32459
YP_009044653.1 NC_024384_p7 DUF1642 domain-containing protein phrog_121 unknown function unknown function 1 2113 2721
YP_009044678.1 NC_024384_p32 hypothetical protein phrog_541 head-tail adaptor connector 1 14633 15028
YP_009044666.1 NC_024384_p20 DUF2481 domain-containing protein phrog_5229 unknown function unknown function 1 6067 6450
YP_009044688.1 NC_024384_p42 tail endopeptidase phrog_326 tail protein with endopeptidase domain other 1 24139 25161
YP_009044695.1 NC_024384_p49 N-acetylmuramoyl-L-alanine amidase domain-containing protein phrog_1794 amidase lysis 1 28363 29313
YP_009044673.1 NC_024384_p27 terminase large subunit phrog_2 terminase large subunit head and packaging 1 8956 10287
YP_009044698.1 NC_024384_p52 hypothetical protein phrog_4724 unknown function unknown function 1 30802 31008
YP_009044669.1 NC_024384_p23 ArpU family transcriptional activator phrog_248 transcriptional activator transcription regulation 1 6763 7197
YP_009044709.1 NC_024384_p63 hypothetical protein phrog_5996 unknown function unknown function 1 36397 36678
YP_009044689.1 NC_024384_p43 pectin lyase fold containing protein phrog_4577 tail protein tail 1 25162 26187
YP_009044692.1 NC_024384_p46 XkdX-like protein phrog_134 unknown function unknown function 1 27590 27736
YP_009044649.1 NC_024384_p3 hypothetical protein phrog_20889 unknown function unknown function 1 1125 1295
YP_009044659.1 NC_024384_p13 hypothetical protein phrog_1494 unknown function unknown function 1 3988 4173
YP_009044647.1 NC_024384_p1 DNA replication protein singleton unknown function unknown function 1 108 362
YP_009044665.1 NC_024384_p19 DUF1064 domain-containing protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 5803 6063
YP_009044708.1 NC_024384_p62 hypothetical protein phrog_8019 unknown function unknown function 1 36164 36400
YP_009044679.1 NC_024384_p33 minor capsid protein phrog_793 head-tail adaptor connector 1 15028 15390
YP_009044677.1 NC_024384_p31 hypothetical protein phrog_247 major head protein head and packaging 1 13613 14614
YP_009044661.1 NC_024384_p15 DUF3850 domain-containing protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 4383 4610
YP_009044712.1 NC_024384_p66 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 37170 37949
YP_009044660.1 NC_024384_p14 hypothetical protein singleton unknown function unknown function 1 4174 4368