| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024384 |
Definition |
Listeria phage LP-030-3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
41156 |
Host Name |
Listeria monocytogenes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
73 |
%GC |
36.55 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009044668.1 | NC_024384_p22 | hypothetical protein | phrog_11352 | unknown function | unknown function | 1 | 6580 | 6744 |
| YP_009044705.1 | NC_024384_p59 | Cro-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 35221 | 35463 |
| YP_009044706.1 | NC_024384_p60 | hypothetical protein | phrog_5868 | unknown function | unknown function | 1 | 35467 | 35733 |
| YP_009044672.1 | NC_024384_p26 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 8445 | 8987 |
| YP_009044704.1 | NC_024384_p58 | C1-like repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 34790 | 35095 |
| YP_009044652.1 | NC_024384_p6 | hypothetical protein | phrog_20345 | unknown function | unknown function | 1 | 1907 | 2116 |
| YP_009044682.1 | NC_024384_p36 | major tail shaft protein | phrog_820 | major tail protein | tail | 1 | 16138 | 16575 |
| YP_009044656.1 | NC_024384_p10 | hypothetical protein | phrog_11760 | unknown function | unknown function | 1 | 3325 | 3498 |
| YP_009044696.1 | NC_024384_p50 | DUF3800 domain-containing protein | phrog_9243 | unknown function | unknown function | 1 | 29458 | 30159 |
| YP_009044686.1 | NC_024384_p40 | tail tape measure protein | phrog_1686 | tail length tape measure protein | tail | 1 | 17934 | 23300 |
| YP_009044690.1 | NC_024384_p44 | DUF2479 domain-containing protein | phrog_3285 | minor tail protein | tail | 1 | 26184 | 27251 |
| YP_009044650.1 | NC_024384_p4 | hypothetical protein | phrog_4074 | unknown function | unknown function | 1 | 1310 | 1597 |
| YP_009044670.1 | NC_024384_p24 | hypothetical protein | phrog_8187 | unknown function | unknown function | 1 | 7561 | 8121 |
| YP_009044700.1 | NC_024384_p54 | Ig-like domain-containing protein | phrog_11062 | unknown function | unknown function | -1 | 32525 | 33265 |
| YP_009044715.1 | NC_024384_p69 | hypothetical protein | phrog_5174 | unknown function | unknown function | 1 | 38803 | 38991 |
| YP_009044707.1 | NC_024384_p61 | hypothetical protein | phrog_6150 | unknown function | unknown function | 1 | 35958 | 36152 |
| YP_009044719.1 | NC_024384_p73 | single-stranded DNA-binding protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 39969 | 40667 |
| YP_009044683.1 | NC_024384_p37 | Ig-like domain-containing protein | phrog_215 | structural protein with Ig domain | head and packaging | 1 | 16544 | 16837 |
| YP_009044713.1 | NC_024384_p67 | hypothetical protein | phrog_1124 | transcriptional regulator | transcription regulation | 1 | 38071 | 38595 |
| YP_009044648.1 | NC_024384_p2 | IstB-like ATP-binding protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 325 | 1131 |
| YP_009044674.1 | NC_024384_p28 | portal protein | phrog_533 | portal protein | head and packaging | 1 | 10345 | 11799 |
| YP_009044663.1 | NC_024384_p17 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 5020 | 5502 |
| YP_009044701.1 | NC_024384_p55 | cobalt ABC transporter domain-containing protein | phrog_9828 | unknown function | unknown function | -1 | 33287 | 34009 |
| YP_009044675.1 | NC_024384_p29 | minor capsid protein | phrog_581 | minor head protein | head and packaging | 1 | 11805 | 12944 |
| YP_009044717.1 | NC_024384_p71 | hypothetical protein | phrog_11613 | unknown function | unknown function | 1 | 39296 | 39490 |
| YP_009044685.1 | NC_024384_p39 | hypothetical protein | phrog_706 | unknown function | unknown function | 1 | 17318 | 17923 |
| YP_009044693.1 | NC_024384_p47 | hypothetical protein | phrog_3999 | unknown function | unknown function | 1 | 27777 | 28082 |
| YP_009044658.1 | NC_024384_p12 | hypothetical protein | phrog_6964 | unknown function | unknown function | 1 | 3698 | 3988 |
| YP_009044651.1 | NC_024384_p5 | hypothetical protein | phrog_9484 | unknown function | unknown function | 1 | 1626 | 1910 |
| YP_009044671.1 | NC_024384_p25 | hypothetical protein | phrog_4960 | unknown function | unknown function | 1 | 8218 | 8403 |
| YP_009044662.1 | NC_024384_p16 | hypothetical protein | phrog_5780 | unknown function | unknown function | 1 | 4622 | 5023 |
| YP_009044654.1 | NC_024384_p8 | hypothetical protein | phrog_24824 | unknown function | unknown function | 1 | 2718 | 2894 |
| YP_009044680.1 | NC_024384_p34 | minor capsid protein | phrog_556 | minor head protein | head and packaging | 1 | 15390 | 15728 |
| YP_009044664.1 | NC_024384_p18 | hypothetical protein | phrog_6184 | unknown function | unknown function | 1 | 5523 | 5714 |
| YP_009044718.1 | NC_024384_p72 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 39487 | 39963 |
| YP_009044694.1 | NC_024384_p48 | holin | phrog_297 | holin | lysis | 1 | 28082 | 28363 |
| YP_009044655.1 | NC_024384_p9 | YopX-like protein | phrog_8684 | unknown function | unknown function | 1 | 2881 | 3324 |
| YP_009044681.1 | NC_024384_p35 | minor capsid protein | phrog_913 | minor head protein | head and packaging | 1 | 15728 | 16135 |
| YP_009044691.1 | NC_024384_p45 | hypothetical protein | phrog_1766 | tail fiber protein | tail | 1 | 27248 | 27589 |
| YP_009044697.1 | NC_024384_p51 | hypothetical protein | phrog_4945 | unknown function | unknown function | 1 | 30572 | 30805 |
| YP_009044710.1 | NC_024384_p64 | hypothetical protein | phrog_7246 | unknown function | unknown function | 1 | 36710 | 36871 |
| YP_009044657.1 | NC_024384_p11 | hypothetical protein | phrog_11379 | unknown function | unknown function | 1 | 3495 | 3701 |
| YP_009044687.1 | NC_024384_p41 | tail component protein | phrog_33 | distal tail protein Dit | tail | 1 | 23297 | 24124 |
| YP_009044667.1 | NC_024384_p21 | hypothetical protein | phrog_7279 | unknown function | unknown function | 1 | 6443 | 6568 |
| YP_009044676.1 | NC_024384_p30 | structural protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 13023 | 13613 |
| YP_009044716.1 | NC_024384_p70 | hypothetical protein | phrog_21539 | unknown function | unknown function | 1 | 39073 | 39201 |
| YP_009044711.1 | NC_024384_p65 | hypothetical protein | phrog_10029 | unknown function | unknown function | -1 | 36864 | 37106 |
| YP_009044702.1 | NC_024384_p56 | zinc-ribbon domain-containing protein | phrog_6586 | unknown function | unknown function | -1 | 34025 | 34243 |
| YP_009044703.1 | NC_024384_p57 | DUF955 domain-containing protein | phrog_87 | metallo-protease | other | -1 | 34266 | 34757 |
| YP_009044684.1 | NC_024384_p38 | hypothetical protein | phrog_1061 | unknown function | unknown function | 1 | 16890 | 17312 |
| YP_009044714.1 | NC_024384_p68 | winged helix-turn-helix DNA-binding domain-containing protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 38602 | 38787 |
| YP_009044699.1 | NC_024384_p53 | integrase | phrog_1 | integrase | integration and excision | -1 | 31257 | 32459 |
| YP_009044653.1 | NC_024384_p7 | DUF1642 domain-containing protein | phrog_121 | unknown function | unknown function | 1 | 2113 | 2721 |
| YP_009044678.1 | NC_024384_p32 | hypothetical protein | phrog_541 | head-tail adaptor | connector | 1 | 14633 | 15028 |
| YP_009044666.1 | NC_024384_p20 | DUF2481 domain-containing protein | phrog_5229 | unknown function | unknown function | 1 | 6067 | 6450 |
| YP_009044688.1 | NC_024384_p42 | tail endopeptidase | phrog_326 | tail protein with endopeptidase domain | other | 1 | 24139 | 25161 |
| YP_009044695.1 | NC_024384_p49 | N-acetylmuramoyl-L-alanine amidase domain-containing protein | phrog_1794 | amidase | lysis | 1 | 28363 | 29313 |
| YP_009044673.1 | NC_024384_p27 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 8956 | 10287 |
| YP_009044698.1 | NC_024384_p52 | hypothetical protein | phrog_4724 | unknown function | unknown function | 1 | 30802 | 31008 |
| YP_009044669.1 | NC_024384_p23 | ArpU family transcriptional activator | phrog_248 | transcriptional activator | transcription regulation | 1 | 6763 | 7197 |
| YP_009044709.1 | NC_024384_p63 | hypothetical protein | phrog_5996 | unknown function | unknown function | 1 | 36397 | 36678 |
| YP_009044689.1 | NC_024384_p43 | pectin lyase fold containing protein | phrog_4577 | tail protein | tail | 1 | 25162 | 26187 |
| YP_009044692.1 | NC_024384_p46 | XkdX-like protein | phrog_134 | unknown function | unknown function | 1 | 27590 | 27736 |
| YP_009044649.1 | NC_024384_p3 | hypothetical protein | phrog_20889 | unknown function | unknown function | 1 | 1125 | 1295 |
| YP_009044659.1 | NC_024384_p13 | hypothetical protein | phrog_1494 | unknown function | unknown function | 1 | 3988 | 4173 |
| YP_009044647.1 | NC_024384_p1 | DNA replication protein | singleton | unknown function | unknown function | 1 | 108 | 362 |
| YP_009044665.1 | NC_024384_p19 | DUF1064 domain-containing protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 5803 | 6063 |
| YP_009044708.1 | NC_024384_p62 | hypothetical protein | phrog_8019 | unknown function | unknown function | 1 | 36164 | 36400 |
| YP_009044679.1 | NC_024384_p33 | minor capsid protein | phrog_793 | head-tail adaptor | connector | 1 | 15028 | 15390 |
| YP_009044677.1 | NC_024384_p31 | hypothetical protein | phrog_247 | major head protein | head and packaging | 1 | 13613 | 14614 |
| YP_009044661.1 | NC_024384_p15 | DUF3850 domain-containing protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 4383 | 4610 |
| YP_009044712.1 | NC_024384_p66 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 37170 | 37949 |
| YP_009044660.1 | NC_024384_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4174 | 4368 |