| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024391 |
Definition |
Staphylococcus phage DW2, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus. |
DB of origin |
REFSEQ |
Length |
41941 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
62 |
%GC |
35.97 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009045046.1 | NC_024391_p53 | tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 27242 | 28183 |
| YP_009045047.1 | NC_024391_p54 | minor structural protein/ peptidase | phrog_663 | minor head protein | head and packaging | 1 | 28194 | 30080 |
| YP_009045041.1 | NC_024391_p48 | tail protein | phrog_176 | tail terminator | connector | 1 | 22189 | 22614 |
| YP_009044995.1 | NC_024391_p2 | lipoprotein | phrog_4037 | unknown function | unknown function | -1 | 1472 | 1975 |
| YP_009045006.1 | NC_024391_p13 | single strand DNA binding protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 5752 | 6390 |
| YP_009045028.1 | NC_024391_p35 | hypothetical protein | phrog_1367 | unknown function | unknown function | 1 | 14122 | 14268 |
| YP_009045036.1 | NC_024391_p43 | major head protein | phrog_10 | major head protein | head and packaging | 1 | 20010 | 20924 |
| YP_009044999.1 | NC_024391_p6 | repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3460 | 3669 |
| YP_009045023.1 | NC_024391_p30 | SaPIbov1 derepressor | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 12589 | 13122 |
| YP_009045054.1 | NC_024391_p61 | holin | phrog_962 | holin | lysis | 1 | 39140 | 39577 |
| YP_009044996.1 | NC_024391_p3 | hypothetical protein | phrog_5375 | unknown function | unknown function | -1 | 1979 | 2470 |
| YP_009044994.1 | NC_024391_p1 | serine recombinase | phrog_95 | integrase | integration and excision | -1 | 23 | 1414 |
| YP_009045019.1 | NC_024391_p26 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 11456 | 11884 |
| YP_009045009.1 | NC_024391_p16 | replication protein | phrog_1163 | unknown function | unknown function | 1 | 7496 | 8317 |
| YP_009045033.1 | NC_024391_p40 | minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 18145 | 19098 |
| YP_009045048.1 | NC_024391_p55 | minor structural protein | phrog_287 | minor tail protein | tail | 1 | 30093 | 31991 |
| YP_009045030.1 | NC_024391_p37 | terminase small subunit | phrog_1595 | terminase small subunit | head and packaging | 1 | 15045 | 15539 |
| YP_009044998.1 | NC_024391_p5 | Xre family transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2971 | 3297 |
| YP_009045010.1 | NC_024391_p17 | DNA replication protein DnaC | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 8330 | 9115 |
| YP_009045049.1 | NC_024391_p56 | tail protein | phrog_257 | minor tail protein | tail | 1 | 31991 | 33814 |
| YP_009045012.1 | NC_024391_p19 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 9283 | 9507 |
| YP_009045031.1 | NC_024391_p38 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 15532 | 16755 |
| YP_009045035.1 | NC_024391_p42 | alanyl-tRNA synthetase | phrog_172 | head scaffolding protein | head and packaging | 1 | 19409 | 19993 |
| YP_009045051.1 | NC_024391_p58 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 34192 | 34368 |
| YP_009045050.1 | NC_024391_p57 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 33814 | 34191 |
| YP_009045021.1 | NC_024391_p28 | acetyltransferase | phrog_1034 | unknown function | unknown function | 1 | 12071 | 12355 |
| YP_009045026.1 | NC_024391_p33 | transcriptional activator RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 13582 | 13755 |
| YP_009045017.1 | NC_024391_p24 | virulence associated protein | phrog_258 | virulence associated | other | 1 | 10975 | 11232 |
| YP_009045032.1 | NC_024391_p39 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 16758 | 18167 |
| YP_009045037.1 | NC_024391_p44 | hypothetical protein | phrog_2406 | unknown function | unknown function | 1 | 20936 | 21079 |
| YP_009045052.1 | NC_024391_p59 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 34408 | 34713 |
| YP_009045015.1 | NC_024391_p22 | leukocidin protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 10113 | 10730 |
| YP_009045008.1 | NC_024391_p15 | virulence associated protein | phrog_398 | unknown function | unknown function | 1 | 6829 | 7524 |
| YP_009044997.1 | NC_024391_p4 | toxin component of toxin-antitoxin system | phrog_87 | metallo-protease | other | -1 | 2491 | 2949 |
| YP_009045027.1 | NC_024391_p34 | hypothetical protein | phrog_2409 | unknown function | unknown function | 1 | 13756 | 14121 |
| YP_009045005.1 | NC_024391_p12 | bacteriophage resistance factor | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 5273 | 5752 |
| YP_009045011.1 | NC_024391_p18 | SaPI1 derepressor | phrog_809 | transcriptional regulator | transcription regulation | 1 | 9112 | 9270 |
| YP_009045029.1 | NC_024391_p36 | transcriptional activator RinA | phrog_36 | transcriptional regulator | transcription regulation | 1 | 14292 | 14714 |
| YP_009045022.1 | NC_024391_p29 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 12348 | 12596 |
| YP_009045042.1 | NC_024391_p49 | tail protein | phrog_238 | major tail protein | tail | 1 | 22615 | 23172 |
| YP_009045014.1 | NC_024391_p21 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 9927 | 10112 |
| YP_009045018.1 | NC_024391_p25 | hypothetical protein | phrog_1241 | unknown function | unknown function | 1 | 11247 | 11453 |
| YP_009045016.1 | NC_024391_p23 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 10730 | 10984 |
| YP_009045040.1 | NC_024391_p47 | structural protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 21769 | 22176 |
| YP_009045034.1 | NC_024391_p41 | seryl-tRNA synthetase | phrog_2881 | dCMP hydroxymethylase | DNA, RNA and nucleotide metabolism | 1 | 19100 | 19306 |
| YP_009045013.1 | NC_024391_p20 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 9518 | 9922 |
| YP_009045007.1 | NC_024391_p14 | single strand DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 6390 | 6815 |
| YP_009045044.1 | NC_024391_p51 | tail assembly protein | phrog_183 | tail chaperone protein | tail | 1 | 23239 | 23751 |
| YP_009045024.1 | NC_024391_p31 | transcriptional activator RinB | phrog_278 | transcriptional regulator | transcription regulation | 1 | 13189 | 13395 |
| YP_009045053.1 | NC_024391_p60 | tail fiber | phrog_18372 | tail fiber protein | tail | 1 | 37086 | 39089 |
| YP_009045000.1 | NC_024391_p7 | antirepressor | phrog_463 | anti-repressor | transcription regulation | 1 | 3708 | 4421 |
| YP_009045039.1 | NC_024391_p46 | head-tail adapter | phrog_25 | head closure Hc1 | connector | 1 | 21447 | 21782 |
| YP_009045002.1 | NC_024391_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4697 | 4816 |
| YP_009045020.1 | NC_024391_p27 | hypothetical protein | phrog_36587 | unknown function | unknown function | 1 | 11961 | 12074 |
| YP_009045004.1 | NC_024391_p11 | hypothetical protein | phrog_3119 | unknown function | unknown function | 1 | 5044 | 5280 |
| YP_009045025.1 | NC_024391_p32 | hypothetical protein | phrog_1122 | unknown function | unknown function | 1 | 13392 | 13580 |
| YP_009045043.1 | NC_024391_p50 | tail assembly protein | phrog_31021 | tail assembly chaperone | tail | 1 | 23239 | 23592 |
| YP_009045043.1 | NC_024391_p50 | tail assembly protein | phrog_31021 | tail assembly chaperone | tail | 1 | 23592 | 24080 |
| YP_009045038.1 | NC_024391_p45 | head-tail adapter | phrog_1161 | head-tail adaptor | connector | 1 | 21085 | 21435 |
| YP_009045003.1 | NC_024391_p10 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 4776 | 5036 |
| YP_009045001.1 | NC_024391_p8 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 4523 | 4684 |
| YP_009045055.1 | NC_024391_p62 | endolysin | phrog_635 | endolysin | lysis | 1 | 39558 | 41003 |
| YP_009045045.1 | NC_024391_p52 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 24084 | 27227 |