| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024786 |
Definition |
Escherichia phage vB_EcoP_PhAPEC5, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Gamaleyavirus. |
DB of origin |
REFSEQ |
Length |
71248 |
Host Name |
Escherichia |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
83 |
%GC |
43.49 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009055513.1 | NC_024786_p8 | hypothetical protein | phrog_6887 | unknown function | unknown function | 1 | 2281 | 2502 |
| YP_009055541.1 | NC_024786_p36 | hypothetical protein | phrog_7471 | unknown function | unknown function | 1 | 14907 | 15098 |
| YP_009055573.1 | NC_024786_p68 | portal protein | phrog_1216 | portal protein | head and packaging | -1 | 56582 | 58852 |
| YP_009055562.1 | NC_024786_p57 | hypothetical protein | phrog_322 | unknown function | unknown function | 1 | 35217 | 35597 |
| YP_009055530.1 | NC_024786_p25 | hypothetical protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9848 | 11023 |
| YP_009055539.1 | NC_024786_p34 | hypothetical protein | phrog_7900 | unknown function | unknown function | 1 | 14368 | 14595 |
| YP_009055587.1 | NC_024786_p82 | hypothetical protein | phrog_1365 | unknown function | unknown function | 1 | 70606 | 70920 |
| YP_009055546.1 | NC_024786_p41 | DNA helicase | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 20614 | 21924 |
| YP_009055559.1 | NC_024786_p54 | hypothetical protein | phrog_7641 | unknown function | unknown function | 1 | 32380 | 32829 |
| YP_009055525.1 | NC_024786_p20 | capsid decorating protein | phrog_2973 | Hoc-like head decoration | head and packaging | 1 | 7117 | 7950 |
| YP_009055581.1 | NC_024786_p76 | hypothetical protein | phrog_2109 | unknown function | unknown function | -1 | 67988 | 68677 |
| YP_009055532.1 | NC_024786_p27 | hypothetical protein | phrog_7594 | unknown function | unknown function | 1 | 11503 | 11706 |
| YP_009055565.1 | NC_024786_p60 | structural protein | phrog_6126 | virion structural protein | head and packaging | -1 | 47062 | 49017 |
| YP_009055542.1 | NC_024786_p37 | rIIA-like protein | phrog_2979 | RIIA lysis inhibitor | lysis | 1 | 15126 | 17687 |
| YP_009055571.1 | NC_024786_p66 | hypothetical protein | phrog_2120 | tail length tape measure protein | tail | -1 | 54984 | 56204 |
| YP_009055555.1 | NC_024786_p50 | primase | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 28018 | 30171 |
| YP_009055512.1 | NC_024786_p7 | hypothetical protein | phrog_20151 | unknown function | unknown function | 1 | 2045 | 2284 |
| YP_009055583.1 | NC_024786_p78 | hypothetical protein | phrog_9160 | unknown function | unknown function | 1 | 69341 | 69739 |
| YP_009055514.1 | NC_024786_p9 | hypothetical protein | phrog_1972 | unknown function | unknown function | 1 | 2499 | 2756 |
| YP_009055582.1 | NC_024786_p77 | hypothetical protein | phrog_7213 | unknown function | unknown function | 1 | 68861 | 69139 |
| YP_009055574.1 | NC_024786_p69 | hypothetical protein | phrog_6197 | Rz-like spanin | lysis | -1 | 58861 | 59361 |
| YP_009055526.1 | NC_024786_p21 | hypothetical protein | phrog_7508 | unknown function | unknown function | 1 | 8056 | 8244 |
| YP_009055552.1 | NC_024786_p47 | hypothetical protein | phrog_9919 | unknown function | unknown function | 1 | 26062 | 26529 |
| YP_009055521.1 | NC_024786_p16 | RNA polymerase RNAP1 subunit B | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4558 | 5376 |
| YP_009055580.1 | NC_024786_p75 | terminase | phrog_38 | terminase large subunit | head and packaging | -1 | 66406 | 67995 |
| YP_009055557.1 | NC_024786_p52 | single-stranded DNA-binding protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 31021 | 31824 |
| YP_009055543.1 | NC_024786_p38 | hypothetical protein | phrog_2886 | RIIB lysis inhibitor | lysis | 1 | 17692 | 19734 |
| YP_009055538.1 | NC_024786_p33 | hypothetical protein | phrog_12633 | unknown function | unknown function | 1 | 14072 | 14308 |
| YP_009055531.1 | NC_024786_p26 | dCTP deaminase | phrog_1663 | dCTP deaminase | DNA, RNA and nucleotide metabolism | 1 | 11020 | 11472 |
| YP_009055510.1 | NC_024786_p5 | hypothetical protein | phrog_5407 | unknown function | unknown function | 1 | 1324 | 1497 |
| YP_009055560.1 | NC_024786_p55 | hypothetical protein | phrog_37481 | unknown function | unknown function | 1 | 33477 | 33599 |
| YP_009055568.1 | NC_024786_p63 | structural protein | phrog_2050 | virion structural protein | head and packaging | -1 | 52143 | 52979 |
| YP_009055540.1 | NC_024786_p35 | hypothetical protein | phrog_9004 | unknown function | unknown function | 1 | 14588 | 14914 |
| YP_009055554.1 | NC_024786_p49 | HNH homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 27449 | 28021 |
| YP_009055511.1 | NC_024786_p6 | hypothetical protein | phrog_7648 | unknown function | unknown function | 1 | 1490 | 1666 |
| YP_009055567.1 | NC_024786_p62 | hypothetical protein | phrog_2220 | unknown function | unknown function | -1 | 49487 | 52141 |
| YP_009055528.1 | NC_024786_p23 | hypothetical protein | phrog_11132 | unknown function | unknown function | 1 | 8427 | 8753 |
| YP_009055578.1 | NC_024786_p73 | hypothetical protein | phrog_12242 | tail protein | tail | -1 | 62987 | 65692 |
| YP_009055575.1 | NC_024786_p70 | N-acetylmuramidase | phrog_315 | endolysin | lysis | -1 | 59342 | 59977 |
| YP_009055516.1 | NC_024786_p11 | hypothetical protein | phrog_464 | unknown function | unknown function | 1 | 3079 | 3444 |
| YP_009055584.1 | NC_024786_p79 | hypothetical protein | phrog_11661 | unknown function | unknown function | 1 | 69705 | 70019 |
| YP_009055566.1 | NC_024786_p61 | hypothetical protein | phrog_2646 | unknown function | unknown function | -1 | 49030 | 49473 |
| YP_009055586.1 | NC_024786_p81 | hypothetical protein | phrog_16338 | unknown function | unknown function | 1 | 70340 | 70609 |
| YP_009055547.1 | NC_024786_p42 | hypothetical protein | phrog_4881 | unknown function | unknown function | 1 | 21935 | 22465 |
| YP_009055522.1 | NC_024786_p17 | hypothetical protein | phrog_15352 | unknown function | unknown function | 1 | 5366 | 5527 |
| YP_009055577.1 | NC_024786_p72 | hypothetical protein | phrog_4217 | tail protein | tail | -1 | 60802 | 62937 |
| YP_009055520.1 | NC_024786_p15 | hypothetical protein | phrog_14487 | unknown function | unknown function | 1 | 4244 | 4504 |
| YP_009055517.1 | NC_024786_p12 | hypothetical protein | phrog_37989 | unknown function | unknown function | 1 | 3437 | 3685 |
| YP_009055558.1 | NC_024786_p53 | hypothetical protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 31824 | 32378 |
| YP_009055553.1 | NC_024786_p48 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 26529 | 27509 |
| YP_009055572.1 | NC_024786_p67 | hypothetical protein | phrog_2346 | unknown function | unknown function | -1 | 56224 | 56568 |
| YP_009055544.1 | NC_024786_p39 | hypothetical protein | phrog_6377 | unknown function | unknown function | 1 | 19797 | 20192 |
| YP_009055579.1 | NC_024786_p74 | hypothetical protein | phrog_2125 | virion structural protein | head and packaging | -1 | 65689 | 66399 |
| YP_009055570.1 | NC_024786_p65 | major coat protein | phrog_1357 | major head protein | head and packaging | -1 | 53765 | 54967 |
| YP_009055535.1 | NC_024786_p30 | hypothetical protein | phrog_9867 | unknown function | unknown function | 1 | 12544 | 12987 |
| YP_009055545.1 | NC_024786_p40 | hypothetical protein | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 20116 | 20580 |
| YP_009055548.1 | NC_024786_p43 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 22475 | 24166 |
| YP_009055507.1 | NC_024786_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 191 | 424 |
| YP_009055569.1 | NC_024786_p64 | hypothetical protein | phrog_2130 | unknown function | unknown function | -1 | 53056 | 53691 |
| YP_009055506.1 | NC_024786_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22 | 141 |
| YP_009055564.1 | NC_024786_p59 | virion RNA polymerase | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 36243 | 46958 |
| YP_009055534.1 | NC_024786_p29 | hypothetical protein | phrog_12812 | unknown function | unknown function | 1 | 12158 | 12544 |
| YP_009055550.1 | NC_024786_p45 | DNA polymerase | phrog_2573 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 24837 | 25760 |
| YP_009055524.1 | NC_024786_p19 | hypothetical protein | phrog_12530 | unknown function | unknown function | 1 | 6860 | 7042 |
| YP_009055536.1 | NC_024786_p31 | thymidilate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 12987 | 13931 |
| YP_009055508.1 | NC_024786_p3 | RNA polymerase RNAP1 subunit A | phrog_4099 | unknown function | unknown function | 1 | 458 | 943 |
| YP_009055527.1 | NC_024786_p22 | hypothetical protein | phrog_7665 | unknown function | unknown function | 1 | 8241 | 8426 |
| YP_009055518.1 | NC_024786_p13 | hypothetical protein | phrog_13804 | unknown function | unknown function | 1 | 3682 | 3867 |
| YP_009055515.1 | NC_024786_p10 | hypothetical protein | phrog_7827 | unknown function | unknown function | 1 | 2753 | 3067 |
| YP_009055561.1 | NC_024786_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33856 | 33975 |
| YP_009055523.1 | NC_024786_p18 | RNA polymerase RNAP2 subunit A | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5584 | 6801 |
| YP_009055576.1 | NC_024786_p71 | hypothetical protein | phrog_5211 | unknown function | unknown function | -1 | 60212 | 60544 |
| YP_009055563.1 | NC_024786_p58 | hypothetical protein | phrog_872 | unknown function | unknown function | 1 | 35716 | 36204 |
| YP_009055509.1 | NC_024786_p4 | hypothetical protein | phrog_13158 | unknown function | unknown function | 1 | 1085 | 1327 |
| YP_009055549.1 | NC_024786_p44 | HNH endonuclease inducing intron mobility | phrog_7545 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 24243 | 24773 |
| YP_009055556.1 | NC_024786_p51 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 30228 | 30980 |
| YP_009055519.1 | NC_024786_p14 | hypothetical protein | phrog_2072 | unknown function | unknown function | 1 | 3864 | 4244 |
| YP_009055529.1 | NC_024786_p24 | hypothetical protein | phrog_1297 | ATPase | other | 1 | 8788 | 9840 |
| YP_009055551.1 | NC_024786_p46 | hypothetical protein | phrog_5974 | unknown function | unknown function | 1 | 25757 | 26062 |
| YP_009055588.1 | NC_024786_p83 | hypothetical protein | phrog_12606 | unknown function | unknown function | 1 | 70910 | 71248 |
| YP_009055533.1 | NC_024786_p28 | membrane immunity protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | 1 | 11780 | 12040 |
| YP_009055585.1 | NC_024786_p80 | hypothetical protein | phrog_12099 | unknown function | unknown function | 1 | 70023 | 70340 |
| YP_009055537.1 | NC_024786_p32 | hypothetical protein | phrog_15754 | unknown function | unknown function | 1 | 13941 | 14066 |