Genomic map of Listeria phage LMTA-148 (NC_024787)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_024787
Definition
Listeria phage LMTA-148, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Jasinkavirinae; Pecentumvirus; Listeria virus LMTA148.
DB of origin
REFSEQ
Length
132541
Host Name
Listeria monocytogenes
Host domain
Bacteria
Is prophage?
undef
Number of proteins
177
%GC
36.02
Number of singletons
11
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009055723.1 NC_024787_p135 hypothetical protein phrog_9820 unknown function unknown function 1 100195 100491
YP_009055731.1 NC_024787_p143 nicotinamide phosphoribosyltransferase phrog_448 nicotinamide phosphoribosyl transferase other 1 103468 105252
YP_009055702.1 NC_024787_p114 hypothetical protein phrog_1074 unknown function unknown function 1 80466 80687
YP_009055682.1 NC_024787_p94 hypothetical protein phrog_1004 virion structural protein head and packaging 1 55479 56297
YP_009055754.1 NC_024787_p166 hypothetical protein phrog_2356 unknown function unknown function 1 124043 124525
YP_009055724.1 NC_024787_p136 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 100515 100826
YP_009055749.1 NC_024787_p161 hypothetical protein phrog_1850 exopolyphosphatase other 1 119807 120736
YP_009055662.1 NC_024787_p74 hypothetical protein phrog_1481 unknown function unknown function -1 40252 40485
YP_009055745.1 NC_024787_p157 hypothetical protein phrog_1025 RNA polymerase sigma factor transcription regulation 1 117530 118168
YP_009055647.1 NC_024787_p59 hypothetical protein phrog_9717 unknown function unknown function -1 29491 29760
YP_009055695.1 NC_024787_p107 hypothetical protein phrog_1073 unknown function unknown function 1 70054 70587
YP_009055676.1 NC_024787_p88 hypothetical protein phrog_11117 portal protein head and packaging 1 49819 50775
YP_009055672.1 NC_024787_p84 hypothetical protein phrog_6631 unknown function unknown function 1 47614 48342
YP_009055599.1 NC_024787_p11 hypothetical protein phrog_22337 unknown function unknown function 1 6700 6942
YP_009055728.1 NC_024787_p140 hypothetical protein singleton unknown function unknown function -1 101943 102449
YP_009055595.1 NC_024787_p7 hypothetical protein phrog_10369 unknown function unknown function 1 5129 5278
YP_009055611.1 NC_024787_p23 hypothetical protein phrog_9107 unknown function unknown function 1 12357 12983
YP_009055721.1 NC_024787_p133 ribonucleotide reductase of class Ia (aerobic) beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 98712 99743
YP_009055598.1 NC_024787_p10 hypothetical protein phrog_11937 unknown function unknown function 1 6085 6537
YP_009055640.1 NC_024787_p52 hypothetical protein phrog_9695 unknown function unknown function -1 26255 26473
YP_009055689.1 NC_024787_p101 hypothetical protein phrog_1316 RNA polymerase beta subunit DNA, RNA and nucleotide metabolism 1 60931 61524
YP_009055623.1 NC_024787_p35 hypothetical protein phrog_12642 unknown function unknown function -1 17808 18023
YP_009055680.1 NC_024787_p92 hypothetical protein phrog_9462 unknown function unknown function 1 54223 54573
YP_009055685.1 NC_024787_p97 hypothetical protein phrog_9471 unknown function unknown function 1 57766 58086
YP_009055743.1 NC_024787_p155 recombinase phrog_97 UvsX-like recombinase other 1 115847 117091
YP_009055605.1 NC_024787_p17 hypothetical protein phrog_9527 unknown function unknown function 1 10338 10577
YP_009055747.1 NC_024787_p159 Ig-like domain containing protein phrog_215 structural protein with Ig domain head and packaging 1 118610 119317
YP_009055697.1 NC_024787_p109 baseplate assembly protein phrog_6 baseplate wedge subunit tail 1 71298 72344
YP_009055720.1 NC_024787_p132 hypothetical protein phrog_30833 unknown function unknown function 1 98595 98711
YP_009055644.1 NC_024787_p56 hypothetical protein phrog_1460 tRNA amidotransferase DNA, RNA and nucleotide metabolism -1 28261 28797
YP_009055703.1 NC_024787_p115 hypothetical protein phrog_9794 unknown function unknown function 1 80690 81982
YP_009055653.1 NC_024787_p65 DUF2828 domain containing protein phrog_850 RNA-binding protein DNA, RNA and nucleotide metabolism -1 32348 33868
YP_009055665.1 NC_024787_p77 terminase phrog_5340 terminase large subunit head and packaging 1 42061 42342
YP_009055715.1 NC_024787_p127 hypothetical protein phrog_7516 unknown function unknown function 1 94439 94762
YP_009055630.1 NC_024787_p42 hypothetical protein phrog_9517 unknown function unknown function -1 20655 20936
YP_009055700.1 NC_024787_p112 hypothetical protein phrog_358 unknown function unknown function 1 76964 79237
YP_009055674.1 NC_024787_p86 hypothetical protein phrog_1108 portal protein head and packaging 1 48766 49116
YP_009055620.1 NC_024787_p32 hypothetical protein phrog_9728 unknown function unknown function 1 16720 16980
YP_009055592.1 NC_024787_p4 hypothetical protein phrog_9671 unknown function unknown function 1 2482 3240
YP_009055603.1 NC_024787_p15 hypothetical protein phrog_10501 unknown function unknown function 1 8600 8878
YP_009055675.1 NC_024787_p87 hypothetical protein phrog_15361 portal protein head and packaging 1 49133 49783
YP_009055734.1 NC_024787_p146 DNA-binding protein phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism 1 108682 108996
YP_009055597.1 NC_024787_p9 hypothetical protein phrog_4655 unknown function unknown function 1 5734 6009
YP_009055590.1 NC_024787_p2 hypothetical protein phrog_9719 unknown function unknown function 1 1362 1931
YP_009055594.1 NC_024787_p6 hypothetical protein phrog_3543 unknown function unknown function 1 4685 5044
YP_009055753.1 NC_024787_p165 hypothetical protein phrog_984 unknown function unknown function 1 123325 124032
YP_009055661.1 NC_024787_p73 hypothetical protein phrog_937 hemolysin other -1 39886 40227
YP_009055740.1 NC_024787_p152 DNA polymerase I phrog_5995 DNA polymerase DNA, RNA and nucleotide metabolism 1 113249 113908
YP_009055596.1 NC_024787_p8 hypothetical protein phrog_10046 unknown function unknown function 1 5387 5650
YP_009055637.1 NC_024787_p49 tail fibers phrog_12982 tail fiber protein tail -1 24863 25060
YP_009055713.1 NC_024787_p125 deoxyuridine 5'-triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 93574 94221
YP_009055633.1 NC_024787_p45 hypothetical protein phrog_10246 unknown function unknown function -1 21990 23243
YP_009055693.1 NC_024787_p105 glycerophosphoryl diester phosphodiesterase phrog_4896 glycerophosphoryl diester phosphodiesterase other 1 68423 69298
YP_009055619.1 NC_024787_p31 hypothetical protein phrog_3392 unknown function unknown function 1 16341 16688
YP_009055718.1 NC_024787_p130 ribonucleotide reductase of class Ia (aerobic) alpha subunit phrog_3987 ribonucleotide reductase large subunit DNA, RNA and nucleotide metabolism 1 95915 97264
YP_009055652.1 NC_024787_p64 helix-turn-helix XRE-family like protein phrog_3 transcriptional repressor transcription regulation -1 32004 32246
YP_009055659.1 NC_024787_p71 hypothetical protein phrog_9075 unknown function unknown function -1 37812 38243
YP_009055604.1 NC_024787_p16 hypothetical protein phrog_9566 unknown function unknown function 1 9496 9753
YP_009055746.1 NC_024787_p158 hypothetical protein phrog_263 holin lysis 1 118227 118592
YP_009055650.1 NC_024787_p62 hypothetical protein phrog_9650 unknown function unknown function -1 31125 31328
YP_009055635.1 NC_024787_p47 hypothetical protein phrog_10442 unknown function unknown function -1 23734 24222
YP_009055651.1 NC_024787_p63 hypothetical protein phrog_990 metal-dependent phosphohydrolase other -1 31321 31752
YP_009055751.1 NC_024787_p163 hypothetical protein phrog_7143 unknown function unknown function 1 122086 122469
YP_009055601.1 NC_024787_p13 hypothetical protein phrog_4264 unknown function unknown function 1 7388 7729
YP_009055744.1 NC_024787_p156 hypothetical protein phrog_1089 unknown function unknown function 1 117153 117530
YP_009055606.1 NC_024787_p18 hypothetical protein phrog_9852 unknown function unknown function 1 10590 10877
YP_009055666.1 NC_024787_p78 terminase phrog_675 terminase large subunit head and packaging 1 42778 44244
YP_009055626.1 NC_024787_p38 serine/threonine protein phosphatase phrog_246 NinI-like serine-threonine phosphatase other -1 18873 19592
YP_009055704.1 NC_024787_p116 hypothetical protein phrog_9920 unknown function unknown function 1 82014 82559
YP_009055733.1 NC_024787_p145 synaptonemal complex 1 (SCP-1) domain containing protein phrog_1054 unknown function unknown function 1 107901 108689
YP_009055719.1 NC_024787_p131 ribonucleotide reductase of class Ib (aerobic) alpha subunit phrog_3844 NrdA-like aerobic NDP reductase large subunit moron, auxiliary metabolic gene and host takeover 1 97475 98506
YP_009055764.1 NC_024787_p176 hypothetical protein phrog_9358 unknown function unknown function 1 130801 131133
YP_009055683.1 NC_024787_p95 hypothetical protein phrog_1127 unknown function unknown function 1 56357 56914
YP_009055628.1 NC_024787_p40 hypothetical protein phrog_9952 unknown function unknown function -1 19918 20088
YP_009055684.1 NC_024787_p96 hypothetical protein phrog_1000 unknown function unknown function 1 56927 57766
YP_009055673.1 NC_024787_p85 hypothetical protein phrog_9678 unknown function unknown function 1 48570 48764
YP_009055736.1 NC_024787_p148 hypothetical protein phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism 1 110031 110528
YP_009055627.1 NC_024787_p39 hypothetical protein phrog_9499 unknown function unknown function -1 19605 19871
YP_009055607.1 NC_024787_p19 hypothetical protein phrog_9612 unknown function unknown function 1 11031 11303
YP_009055707.1 NC_024787_p119 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 87350 88813
YP_009055701.1 NC_024787_p113 hypothetical protein phrog_5986 unknown function unknown function 1 79215 80420
YP_009055589.1 NC_024787_p1 transposase domain containing protein phrog_9186 unknown function unknown function 1 232 1314
YP_009055622.1 NC_024787_p34 hypothetical protein phrog_11576 unknown function unknown function 1 17493 17789
YP_009055738.1 NC_024787_p150 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 111287 112243
YP_009055600.1 NC_024787_p12 hypothetical protein phrog_11464 unknown function unknown function 1 7039 7182
YP_009055612.1 NC_024787_p24 hypothetical protein phrog_7175 unknown function unknown function 1 12985 13206
YP_009055763.1 NC_024787_p175 hypothetical protein phrog_10568 unknown function unknown function 1 130230 130808
YP_009055725.1 NC_024787_p137 thioredoxin phrog_9691 thioredoxin domain DNA, RNA and nucleotide metabolism 1 100913 101212
YP_009055760.1 NC_024787_p172 hypothetical protein phrog_7005 unknown function unknown function 1 128262 129107
YP_009055690.1 NC_024787_p102 tail lysin phrog_1047 tail associated lysin tail 1 61586 65314
YP_009055717.1 NC_024787_p129 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 95180 95800
YP_009055631.1 NC_024787_p43 hypothetical protein phrog_9379 unknown function unknown function -1 21221 21763
YP_009055643.1 NC_024787_p55 hypothetical protein phrog_548 RNA ligase DNA, RNA and nucleotide metabolism -1 27306 28247
YP_009055614.1 NC_024787_p26 hypothetical protein phrog_12804 unknown function unknown function 1 13706 14065
YP_009055625.1 NC_024787_p37 hypothetical protein singleton unknown function unknown function 1 18595 18774
YP_009055687.1 NC_024787_p99 hypothetical protein phrog_985 virion structural protein head and packaging 1 59846 60268
YP_009055712.1 NC_024787_p124 DNA primase/helicase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 92467 93462
YP_009055648.1 NC_024787_p60 tRNA-splicing ligase phrog_32430 tRNA splicing ligase RtcB DNA, RNA and nucleotide metabolism -1 29807 30223
YP_009055629.1 NC_024787_p41 hypothetical protein phrog_121 unknown function unknown function -1 20113 20658
YP_009055686.1 NC_024787_p98 tail sheath protein phrog_279 tail sheath tail 1 58090 59778
YP_009055657.1 NC_024787_p69 hypothetical protein phrog_9389 unknown function unknown function -1 36302 36499
YP_009055639.1 NC_024787_p51 phosphoesterase phrog_547 phosphoesterase other -1 25641 26258
YP_009055727.1 NC_024787_p139 hypothetical protein singleton unknown function unknown function 1 101355 101846
YP_009055761.1 NC_024787_p173 hypothetical protein phrog_7350 unknown function unknown function 1 129173 129628
YP_009055615.1 NC_024787_p27 hypothetical protein phrog_11450 unknown function unknown function 1 14076 15263
YP_009055741.1 NC_024787_p153 hypothetical protein phrog_1069 unknown function unknown function 1 114003 114479
YP_009055755.1 NC_024787_p167 hypothetical protein phrog_1113 unknown function unknown function 1 124585 125469
YP_009055624.1 NC_024787_p36 hypothetical protein phrog_10101 unknown function unknown function 1 18056 18418
YP_009055668.1 NC_024787_p80 hypothetical protein phrog_13012 unknown function unknown function 1 45238 45354
YP_009055708.1 NC_024787_p120 recombination exonuclease phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 88828 89880
YP_009055696.1 NC_024787_p108 baseplate protein phrog_975 baseplate protein tail 1 70574 71284
YP_009055655.1 NC_024787_p67 hypothetical protein phrog_6885 unknown function unknown function -1 34578 34796
YP_009055632.1 NC_024787_p44 hypothetical protein phrog_9937 unknown function unknown function -1 21760 21987
YP_009055742.1 NC_024787_p154 single-stranded DNA-binding protein phrog_1867 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 114518 115777
YP_009055649.1 NC_024787_p61 RtcB singleton unknown function unknown function -1 30235 31017
YP_009055660.1 NC_024787_p72 hypothetical protein phrog_1215 unknown function unknown function -1 39600 39836
YP_009055714.1 NC_024787_p126 hypothetical protein phrog_10262 unknown function unknown function 1 94218 94442
YP_009055756.1 NC_024787_p168 hypothetical protein phrog_9749 unknown function unknown function 1 125563 125997
YP_009055608.1 NC_024787_p20 hypothetical protein phrog_24326 unknown function unknown function 1 11385 11600
YP_009055710.1 NC_024787_p122 recombination exonuclease phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 90949 91857
YP_009055709.1 NC_024787_p121 recombination exonuclease singleton unknown function unknown function 1 89975 90802
YP_009055750.1 NC_024787_p162 metallophosphoesterase domain containing protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 120795 122066
YP_009055618.1 NC_024787_p30 hypothetical protein phrog_6159 unknown function unknown function 1 16156 16341
YP_009055711.1 NC_024787_p123 hypothetical protein phrog_1070 anti-sigma factor moron, auxiliary metabolic gene and host takeover 1 91877 92467
YP_009055762.1 NC_024787_p174 hypothetical protein phrog_10641 unknown function unknown function 1 129661 130233
YP_009055757.1 NC_024787_p169 hypothetical protein phrog_6360 unknown function unknown function 1 126003 126449
YP_009055641.1 NC_024787_p53 hypothetical protein phrog_1238 phosphoheptose isomerase moron, auxiliary metabolic gene and host takeover -1 26490 26867
YP_009055739.1 NC_024787_p151 hypothetical protein phrog_2081 HNH endonuclease DNA, RNA and nucleotide metabolism 1 112376 113065
YP_009055656.1 NC_024787_p68 hypothetical protein phrog_9386 unknown function unknown function -1 35869 36276
YP_009055752.1 NC_024787_p164 hypothetical protein phrog_1080 unknown function unknown function 1 122477 123022
YP_009055642.1 NC_024787_p54 hypothetical protein phrog_9618 unknown function unknown function -1 26870 27226
YP_009055758.1 NC_024787_p170 hypothetical protein phrog_9512 unknown function unknown function 1 126550 127254
YP_009055699.1 NC_024787_p111 hypothetical protein phrog_1394 virion structural protein head and packaging 1 76426 76947
YP_009055670.1 NC_024787_p82 hypothetical protein phrog_1991 unknown function unknown function 1 45972 46352
YP_009055765.1 NC_024787_p177 hypothetical protein phrog_1007 unknown function unknown function 1 131419 132147
YP_009055593.1 NC_024787_p5 hypothetical protein singleton unknown function unknown function 1 3355 3504
YP_009055658.1 NC_024787_p70 DUF2829 domain containing protein singleton unknown function unknown function -1 37536 37688
YP_009055663.1 NC_024787_p75 hypothetical protein phrog_3395 membrane protein moron, auxiliary metabolic gene and host takeover 1 40997 41383
YP_009055706.1 NC_024787_p118 winged helix-turn-helix domain containing phrog_1098 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 85719 87332
YP_009055681.1 NC_024787_p93 hypothetical protein phrog_772 tail fiber protein tail 1 54580 55461
YP_009055694.1 NC_024787_p106 hypothetical protein phrog_1011 virion structural protein head and packaging 1 69336 70049
YP_009055613.1 NC_024787_p25 hypothetical protein phrog_12028 unknown function unknown function 1 13306 13611
YP_009055735.1 NC_024787_p147 DNA polymerase I phrog_4008 DNA polymerase DNA, RNA and nucleotide metabolism 1 109078 109914
YP_009055616.1 NC_024787_p28 hypothetical protein phrog_7738 unknown function unknown function 1 15426 15851
YP_009055677.1 NC_024787_p89 prohead protease phrog_1028 head maturation protease head and packaging 1 50874 51668
YP_009055669.1 NC_024787_p81 hypothetical protein phrog_1116 unknown function unknown function 1 45344 45982
YP_009055621.1 NC_024787_p33 hypothetical protein phrog_9112 unknown function unknown function 1 17061 17393
YP_009055698.1 NC_024787_p110 hypothetical protein phrog_2386 virion structural protein head and packaging 1 72380 76309
YP_009055730.1 NC_024787_p142 ribose-phosphate pyrophosphokinase singleton unknown function unknown function 1 103341 103457
YP_009055691.1 NC_024787_p103 tail lysin phrog_1015 tail protein with lysin activity tail 1 65360 67747
YP_009055617.1 NC_024787_p29 hypothetical protein phrog_6964 unknown function unknown function 1 15869 16159
YP_009055636.1 NC_024787_p48 hypothetical protein phrog_9902 unknown function unknown function -1 24228 24860
YP_009055716.1 NC_024787_p128 hypothetical protein phrog_1095 unknown function unknown function 1 94755 95177
YP_009055705.1 NC_024787_p117 DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 82660 85677
YP_009055638.1 NC_024787_p50 hypothetical protein phrog_1934 unknown function unknown function -1 25050 25364
YP_009055591.1 NC_024787_p3 hypothetical protein phrog_9011 unknown function unknown function 1 1934 2467
YP_009055688.1 NC_024787_p100 hypothetical protein phrog_1038 tail assembly chaperone tail 1 60420 60863
YP_009055732.1 NC_024787_p144 PcfJ domain containing protein phrog_9253 unknown function unknown function 1 105348 107807
YP_009055726.1 NC_024787_p138 hypothetical protein phrog_9795 unknown function unknown function 1 101215 101352
YP_009055645.1 NC_024787_p57 hypothetical protein phrog_9898 unknown function unknown function -1 28794 28985
YP_009055748.1 NC_024787_p160 hypothetical protein phrog_9872 unknown function unknown function 1 119424 119810
YP_009055722.1 NC_024787_p134 ribonucleotide reduction protein phrog_883 flavodoxin moron, auxiliary metabolic gene and host takeover 1 99740 100192
YP_009055671.1 NC_024787_p83 lysin, N-acetylmuramoyl-L-alanine amidase phrog_5182 endolysin lysis 1 46416 47441
YP_009055678.1 NC_024787_p90 hypothetical protein phrog_1133 unknown function unknown function 1 51661 52566
YP_009055654.1 NC_024787_p66 hypothetical protein phrog_1257 ribosome associated inhibitor A; zinc finger domain moron, auxiliary metabolic gene and host takeover -1 34265 34477
YP_009055602.1 NC_024787_p14 hypothetical protein singleton unknown function unknown function 1 7904 8179
YP_009055610.1 NC_024787_p22 hypothetical protein phrog_9360 unknown function unknown function 1 11925 12053
YP_009055737.1 NC_024787_p149 DNA polymerase I singleton unknown function unknown function 1 110754 110981
YP_009055609.1 NC_024787_p21 hypothetical protein phrog_1933 unknown function unknown function 1 11625 11822
YP_009055634.1 NC_024787_p46 hypothetical protein phrog_10136 unknown function unknown function -1 23245 23667
YP_009055692.1 NC_024787_p104 glycerophosphoryl diester phosphodiesterase singleton unknown function unknown function 1 67765 68433
YP_009055664.1 NC_024787_p76 hypothetical protein phrog_1063 terminase small subunit head and packaging 1 41645 42061
YP_009055646.1 NC_024787_p58 hypothetical protein phrog_1017 unknown function unknown function -1 28986 29489
YP_009055679.1 NC_024787_p91 major capsid protein phrog_752 major head protein head and packaging 1 52738 54141
YP_009055759.1 NC_024787_p171 AAA_5 domain containing protein phrog_249 porphyrin biosynthesis moron, auxiliary metabolic gene and host takeover 1 127259 128275
YP_009055729.1 NC_024787_p141 ribose-phosphate pyrophosphokinase phrog_619 ribose-phosphate pyrophosphokinase other 1 102541 103335
YP_009055667.1 NC_024787_p79 hypothetical protein phrog_1917 virion structural protein head and packaging 1 44313 45152