| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024790 |
Definition |
Escherichia phage vB_EcoP_PhAPEC7, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Gamaleyavirus. |
DB of origin |
REFSEQ |
Length |
71778 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
83 |
%GC |
43.34 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009056181.1 | NC_024790_p52 | hypothetical protein | phrog_7641 | unknown function | unknown function | 1 | 33026 | 33475 |
| YP_009056199.1 | NC_024790_p70 | hypothetical protein | phrog_5211 | unknown function | unknown function | -1 | 60248 | 60580 |
| YP_009056188.1 | NC_024790_p59 | hypothetical protein | phrog_2646 | unknown function | unknown function | -1 | 49066 | 49509 |
| YP_009056159.1 | NC_024790_p30 | hypothetical protein | phrog_9867 | unknown function | unknown function | 1 | 13041 | 13484 |
| YP_009056153.1 | NC_024790_p24 | hypothetical protein | phrog_1297 | ATPase | other | 1 | 9270 | 10322 |
| YP_009056178.1 | NC_024790_p49 | hypothetical protein | phrog_8790 | restriction endonuclease | DNA, RNA and nucleotide metabolism | 1 | 30546 | 30809 |
| YP_009056211.1 | NC_024790_p82 | hypothetical protein | singleton | unknown function | unknown function | 1 | 71078 | 71371 |
| YP_009056164.1 | NC_024790_p35 | hypothetical protein | phrog_7471 | unknown function | unknown function | 1 | 15251 | 15442 |
| YP_009056133.1 | NC_024790_p4 | hypothetical protein | phrog_13158 | unknown function | unknown function | 1 | 1565 | 1807 |
| YP_009056176.1 | NC_024790_p47 | hypothetical protein | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 27868 | 30021 |
| YP_009056195.1 | NC_024790_p66 | structural protein | phrog_1216 | portal protein | head and packaging | -1 | 56618 | 58888 |
| YP_009056208.1 | NC_024790_p79 | hypothetical protein | phrog_12099 | unknown function | unknown function | 1 | 70091 | 70405 |
| YP_009056196.1 | NC_024790_p67 | hypothetical protein | phrog_20026 | Rz-like spanin | lysis | -1 | 58897 | 59115 |
| YP_009056206.1 | NC_024790_p77 | hypothetical protein | phrog_9160 | unknown function | unknown function | 1 | 69409 | 69807 |
| YP_009056209.1 | NC_024790_p80 | hypothetical protein | phrog_1365 | unknown function | unknown function | 1 | 70405 | 70719 |
| YP_009056168.1 | NC_024790_p39 | hypothetical protein | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 20601 | 20942 |
| YP_009056152.1 | NC_024790_p23 | hypothetical protein | phrog_11132 | unknown function | unknown function | 1 | 8909 | 9235 |
| YP_009056167.1 | NC_024790_p38 | hypothetical protein | phrog_6377 | unknown function | unknown function | 1 | 20159 | 20554 |
| YP_009056190.1 | NC_024790_p61 | structural protein | phrog_2050 | virion structural protein | head and packaging | -1 | 52179 | 53015 |
| YP_009056193.1 | NC_024790_p64 | hypothetical protein | phrog_2120 | tail length tape measure protein | tail | -1 | 55020 | 56240 |
| YP_009056135.1 | NC_024790_p6 | hypothetical protein | phrog_7648 | unknown function | unknown function | 1 | 1970 | 2146 |
| YP_009056139.1 | NC_024790_p10 | hypothetical protein | phrog_7827 | unknown function | unknown function | 1 | 3233 | 3547 |
| YP_009056191.1 | NC_024790_p62 | hypothetical protein | phrog_2130 | unknown function | unknown function | -1 | 53092 | 53733 |
| YP_009056210.1 | NC_024790_p81 | hypothetical protein | phrog_12606 | unknown function | unknown function | 1 | 70709 | 71044 |
| YP_009056198.1 | NC_024790_p69 | hypothetical protein | phrog_1356 | holin | lysis | -1 | 60003 | 60263 |
| YP_009056194.1 | NC_024790_p65 | hypothetical protein | phrog_2346 | unknown function | unknown function | -1 | 56260 | 56604 |
| YP_009056192.1 | NC_024790_p63 | major capsid protein | phrog_1357 | major head protein | head and packaging | -1 | 53801 | 55003 |
| YP_009056200.1 | NC_024790_p71 | tail fiber protein | phrog_4217 | tail protein | tail | -1 | 60838 | 62973 |
| YP_009056150.1 | NC_024790_p21 | hypothetical protein | phrog_7508 | unknown function | unknown function | 1 | 8538 | 8726 |
| YP_009056158.1 | NC_024790_p29 | hypothetical protein | phrog_12812 | unknown function | unknown function | 1 | 12661 | 13041 |
| YP_009056205.1 | NC_024790_p76 | hypothetical protein | phrog_7213 | unknown function | unknown function | 1 | 68929 | 69207 |
| YP_009056166.1 | NC_024790_p37 | rIIB-like protein | phrog_2886 | RIIB lysis inhibitor | lysis | 1 | 18036 | 20096 |
| YP_009056173.1 | NC_024790_p44 | hypothetical protein | phrog_5974 | unknown function | unknown function | 1 | 26119 | 26424 |
| YP_009056138.1 | NC_024790_p9 | hypothetical protein | phrog_1972 | unknown function | unknown function | 1 | 2979 | 3236 |
| YP_009056197.1 | NC_024790_p68 | N-acetylmuramidase | phrog_315 | endolysin | lysis | -1 | 59378 | 60013 |
| YP_009056185.1 | NC_024790_p56 | hypothetical protein | phrog_872 | unknown function | unknown function | 1 | 36115 | 36603 |
| YP_009056186.1 | NC_024790_p57 | virion RNA polymerase | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 36642 | 46994 |
| YP_009056141.1 | NC_024790_p12 | hypothetical protein | phrog_37989 | unknown function | unknown function | 1 | 3917 | 4165 |
| YP_009056183.1 | NC_024790_p54 | hypothetical protein | phrog_37481 | unknown function | unknown function | 1 | 34200 | 34322 |
| YP_009056144.1 | NC_024790_p15 | hypothetical protein | phrog_14487 | unknown function | unknown function | 1 | 4724 | 4984 |
| YP_009056146.1 | NC_024790_p17 | hypothetical protein | phrog_15352 | unknown function | unknown function | 1 | 5846 | 6007 |
| YP_009056148.1 | NC_024790_p19 | hypothetical protein | phrog_12530 | unknown function | unknown function | 1 | 7342 | 7524 |
| YP_009056212.1 | NC_024790_p83 | hypothetical protein | phrog_16338 | unknown function | unknown function | 1 | 71393 | 71719 |
| YP_009056151.1 | NC_024790_p22 | hypothetical protein | phrog_7665 | unknown function | unknown function | 1 | 8723 | 8908 |
| YP_009056207.1 | NC_024790_p78 | hypothetical protein | phrog_11661 | unknown function | unknown function | 1 | 69773 | 70087 |
| YP_009056171.1 | NC_024790_p42 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 22837 | 26122 |
| YP_009056201.1 | NC_024790_p72 | tail protein | phrog_12242 | tail protein | tail | -1 | 63023 | 65761 |
| YP_009056147.1 | NC_024790_p18 | RNA polymerase subunit 2 | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 6064 | 7281 |
| YP_009056155.1 | NC_024790_p26 | dCTP deaminase | phrog_1663 | dCTP deaminase | DNA, RNA and nucleotide metabolism | 1 | 11505 | 12011 |
| YP_009056175.1 | NC_024790_p46 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 26891 | 27871 |
| YP_009056157.1 | NC_024790_p28 | superinfection immunity protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | 1 | 12301 | 12543 |
| YP_009056145.1 | NC_024790_p16 | RNA polymerase subunit 1 | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5038 | 5856 |
| YP_009056172.1 | NC_024790_p43 | HNH endonuclease inducing intron mobility | phrog_7545 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 24605 | 25135 |
| YP_009056131.1 | NC_024790_p2 | hypothetical protein | phrog_24403 | unknown function | unknown function | 1 | 556 | 903 |
| YP_009056189.1 | NC_024790_p60 | hypothetical protein | phrog_2220 | unknown function | unknown function | -1 | 49523 | 52177 |
| YP_009056174.1 | NC_024790_p45 | hypothetical protein | phrog_9919 | unknown function | unknown function | 1 | 26424 | 26891 |
| YP_009056130.1 | NC_024790_p1 | hypothetical protein | phrog_5020 | unknown function | unknown function | 1 | 142 | 465 |
| YP_009056184.1 | NC_024790_p55 | hypothetical protein | phrog_322 | unknown function | unknown function | 1 | 35616 | 35996 |
| YP_009056149.1 | NC_024790_p20 | structural protein | phrog_2973 | Hoc-like head decoration | head and packaging | 1 | 7599 | 8432 |
| YP_009056179.1 | NC_024790_p50 | single-stranded DNA-binding protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 31667 | 32470 |
| YP_009056203.1 | NC_024790_p74 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | -1 | 66475 | 68064 |
| YP_009056161.1 | NC_024790_p32 | hypothetical protein | phrog_12633 | unknown function | unknown function | 1 | 14425 | 14664 |
| YP_009056165.1 | NC_024790_p36 | rIIA-like protein | phrog_2979 | RIIA lysis inhibitor | lysis | 1 | 15470 | 18031 |
| YP_009056137.1 | NC_024790_p8 | hypothetical protein | phrog_6887 | unknown function | unknown function | 1 | 2761 | 2982 |
| YP_009056177.1 | NC_024790_p48 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 30078 | 31626 |
| YP_009056169.1 | NC_024790_p40 | DNA helicase | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 20976 | 22286 |
| YP_009056202.1 | NC_024790_p73 | structural protein | phrog_2125 | virion structural protein | head and packaging | -1 | 65758 | 66468 |
| YP_009056180.1 | NC_024790_p51 | hypothetical protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 32470 | 33051 |
| YP_009056143.1 | NC_024790_p14 | hypothetical protein | phrog_2072 | unknown function | unknown function | 1 | 4338 | 4724 |
| YP_009056136.1 | NC_024790_p7 | hypothetical protein | phrog_20151 | unknown function | unknown function | 1 | 2525 | 2764 |
| YP_009056187.1 | NC_024790_p58 | structural protein | phrog_6126 | virion structural protein | head and packaging | -1 | 47089 | 49053 |
| YP_009056142.1 | NC_024790_p13 | hypothetical protein | phrog_13804 | unknown function | unknown function | 1 | 4162 | 4347 |
| YP_009056140.1 | NC_024790_p11 | hypothetical protein | phrog_464 | unknown function | unknown function | 1 | 3559 | 3924 |
| YP_009056132.1 | NC_024790_p3 | hypothetical protein | phrog_4099 | unknown function | unknown function | 1 | 938 | 1423 |
| YP_009056204.1 | NC_024790_p75 | hypothetical protein | phrog_2109 | unknown function | unknown function | -1 | 68057 | 68746 |
| YP_009056160.1 | NC_024790_p31 | thymidylate synthase complementing protein | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 13484 | 14428 |
| YP_009056134.1 | NC_024790_p5 | hypothetical protein | phrog_5407 | unknown function | unknown function | 1 | 1804 | 1977 |
| YP_009056182.1 | NC_024790_p53 | hypothetical protein | phrog_14773 | unknown function | unknown function | 1 | 33707 | 33877 |
| YP_009056156.1 | NC_024790_p27 | hypothetical protein | phrog_7594 | unknown function | unknown function | 1 | 12042 | 12227 |
| YP_009056162.1 | NC_024790_p33 | hypothetical protein | phrog_7900 | unknown function | unknown function | 1 | 14724 | 14939 |
| YP_009056154.1 | NC_024790_p25 | hypothetical protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10330 | 11505 |
| YP_009056170.1 | NC_024790_p41 | hypothetical protein | phrog_4881 | unknown function | unknown function | 1 | 22297 | 22827 |
| YP_009056163.1 | NC_024790_p34 | hypothetical protein | phrog_9004 | unknown function | unknown function | 1 | 14932 | 15258 |