| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_024791 |
Definition |
Vibrio phage ICP2_2013_A_Haiti, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
50440 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
57 |
%GC |
42.79 |
Number of singletons |
6 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009056252.1 | NC_024791_p40 | aerobic cobaltochelatase CobT subunit | phrog_17276 | aerobic cobaltochelatase CobT subunit | moron, auxiliary metabolic gene and host takeover | 1 | 32879 | 34594 |
| YP_009056241.1 | NC_024791_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29108 | 29395 |
| YP_009056225.1 | NC_024791_p13 | hypothetical protein | phrog_18064 | unknown function | unknown function | -1 | 12138 | 12545 |
| YP_009056248.1 | NC_024791_p36 | hypothetical protein | phrog_1965 | unknown function | unknown function | 1 | 31380 | 31973 |
| YP_009056219.1 | NC_024791_p7 | hypothetical protein | phrog_8168 | unknown function | unknown function | -1 | 7737 | 8180 |
| YP_009056260.1 | NC_024791_p48 | hypothetical protein | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 38363 | 39619 |
| YP_009056236.1 | NC_024791_p24 | hypothetical protein | phrog_14064 | tail fiber protein | tail | -1 | 22246 | 23835 |
| YP_009056229.1 | NC_024791_p17 | hypothetical protein | phrog_7931 | unknown function | unknown function | -1 | 16019 | 16771 |
| YP_009056222.1 | NC_024791_p10 | hypothetical protein | phrog_9082 | unknown function | unknown function | -1 | 10846 | 11046 |
| YP_009056233.1 | NC_024791_p21 | hypothetical protein | phrog_8035 | unknown function | unknown function | -1 | 20340 | 20843 |
| YP_009056215.1 | NC_024791_p3 | hypothetical protein | phrog_3899 | unknown function | unknown function | -1 | 940 | 1239 |
| YP_009056234.1 | NC_024791_p22 | hypothetical protein | phrog_2432 | unknown function | unknown function | -1 | 20896 | 21174 |
| YP_009056251.1 | NC_024791_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32612 | 32878 |
| YP_009056247.1 | NC_024791_p35 | hypothetical protein | phrog_16974 | unknown function | unknown function | 1 | 30820 | 31311 |
| YP_009056249.1 | NC_024791_p37 | hypothetical protein | phrog_17353 | unknown function | unknown function | 1 | 31978 | 32349 |
| YP_009056255.1 | NC_024791_p43 | hypothetical protein | phrog_16777 | unknown function | unknown function | 1 | 36018 | 36272 |
| YP_009056227.1 | NC_024791_p15 | hypothetical protein | phrog_18422 | unknown function | unknown function | -1 | 14449 | 14958 |
| YP_009056261.1 | NC_024791_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39619 | 39867 |
| YP_009056239.1 | NC_024791_p27 | hypothetical protein | phrog_14737 | unknown function | unknown function | 1 | 28125 | 28616 |
| YP_009056256.1 | NC_024791_p44 | hypothetical protein | phrog_19971 | unknown function | unknown function | 1 | 36328 | 36618 |
| YP_009056242.1 | NC_024791_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29462 | 29641 |
| YP_009056243.1 | NC_024791_p31 | hypothetical protein | phrog_18025 | unknown function | unknown function | 1 | 29689 | 29940 |
| YP_009056257.1 | NC_024791_p45 | hypothetical protein | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 36587 | 37399 |
| YP_009056235.1 | NC_024791_p23 | hypothetical protein | phrog_10745 | unknown function | unknown function | -1 | 21187 | 22236 |
| YP_009056217.1 | NC_024791_p5 | hypothetical protein | phrog_17082 | unknown function | unknown function | -1 | 1507 | 3468 |
| YP_009056267.1 | NC_024791_p55 | hypothetical protein | phrog_16403 | unknown function | unknown function | 1 | 43199 | 43465 |
| YP_009056259.1 | NC_024791_p47 | hypothetical protein | phrog_16700 | unknown function | unknown function | 1 | 37935 | 38366 |
| YP_009056244.1 | NC_024791_p32 | hypothetical protein | phrog_17158 | unknown function | unknown function | 1 | 29959 | 30147 |
| YP_009056221.1 | NC_024791_p9 | hypothetical protein | phrog_8094 | tail appendage | tail | -1 | 8661 | 10865 |
| YP_009056246.1 | NC_024791_p34 | hypothetical protein | phrog_18100 | unknown function | unknown function | 1 | 30433 | 30765 |
| YP_009056266.1 | NC_024791_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43021 | 43221 |
| YP_009056216.1 | NC_024791_p4 | hypothetical protein | phrog_21136 | unknown function | unknown function | -1 | 1208 | 1504 |
| YP_009056254.1 | NC_024791_p42 | hypothetical protein | phrog_17083 | unknown function | unknown function | 1 | 35735 | 36025 |
| YP_009056231.1 | NC_024791_p19 | portal (connector) protein | phrog_332 | head-tail adaptor | connector | -1 | 17075 | 18820 |
| YP_009056268.1 | NC_024791_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43467 | 43880 |
| YP_009056213.1 | NC_024791_p1 | hypothetical protein | phrog_2452 | unknown function | unknown function | 1 | 172 | 468 |
| YP_009056232.1 | NC_024791_p20 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | -1 | 18821 | 20347 |
| YP_009056263.1 | NC_024791_p51 | hypothetical protein | phrog_2573 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 41080 | 41964 |
| YP_009056230.1 | NC_024791_p18 | hypothetical protein | phrog_8956 | unknown function | unknown function | -1 | 16825 | 17064 |
| YP_009056240.1 | NC_024791_p28 | hypothetical protein | phrog_14633 | unknown function | unknown function | 1 | 28690 | 29097 |
| YP_009056245.1 | NC_024791_p33 | hypothetical protein | phrog_21997 | unknown function | unknown function | 1 | 30217 | 30399 |
| YP_009056264.1 | NC_024791_p52 | hypothetical protein | phrog_18140 | unknown function | unknown function | 1 | 42125 | 42619 |
| YP_009056238.1 | NC_024791_p26 | hypothetical protein | phrog_15513 | unknown function | unknown function | 1 | 27865 | 28107 |
| YP_009056262.1 | NC_024791_p50 | DNA polymerase | phrog_9556 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 39871 | 41070 |
| YP_009056258.1 | NC_024791_p46 | hypothetical protein | phrog_18510 | unknown function | unknown function | 1 | 37390 | 37932 |
| YP_009056250.1 | NC_024791_p38 | hypothetical protein | phrog_18043 | unknown function | unknown function | 1 | 32418 | 32594 |
| YP_009056220.1 | NC_024791_p8 | hypothetical protein | phrog_1249 | acetyltransferase | other | -1 | 8260 | 8664 |
| YP_009056226.1 | NC_024791_p14 | hypothetical protein | phrog_17462 | unknown function | unknown function | -1 | 12739 | 14364 |
| YP_009056269.1 | NC_024791_p57 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43877 | 44722 |
| YP_009056265.1 | NC_024791_p53 | hypothetical protein | phrog_18273 | unknown function | unknown function | 1 | 42678 | 43031 |
| YP_009056218.1 | NC_024791_p6 | hypothetical protein | phrog_12003 | internal virion protein | head and packaging | -1 | 3474 | 7724 |
| YP_009056237.1 | NC_024791_p25 | hypothetical protein | phrog_17587 | tail fiber protein | tail | -1 | 23847 | 26144 |
| YP_009056224.1 | NC_024791_p12 | hypothetical protein | phrog_4590 | unknown function | unknown function | -1 | 11851 | 12138 |
| YP_009056214.1 | NC_024791_p2 | hypothetical protein | phrog_16830 | unknown function | unknown function | -1 | 630 | 968 |
| YP_009056253.1 | NC_024791_p41 | hypothetical protein | phrog_249 | porphyrin biosynthesis | moron, auxiliary metabolic gene and host takeover | 1 | 34610 | 35725 |
| YP_009056228.1 | NC_024791_p16 | hypothetical protein | phrog_267 | major head protein | head and packaging | -1 | 15028 | 15999 |
| YP_009056223.1 | NC_024791_p11 | hypothetical protein | phrog_7592 | tail protein | tail | -1 | 11057 | 11851 |