| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_025115 |
Definition |
Ralstonia phage RSY1 DNA, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Peduovirinae; Aresaunavirus; Ralstonia virus RSY1. |
DB of origin |
REFSEQ |
Length |
40002 |
Host Name |
Ralstonia solanacearum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
64.82 |
Number of singletons |
6 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009067080.1 | NC_025115_p3 | protein of an unannotated phage | phrog_32974 | unknown function | unknown function | 1 | 3625 | 4494 |
| YP_009067114.1 | NC_025115_p37 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 31801 | 32172 |
| YP_009067125.1 | NC_025115_p48 | protein of an unannotated phage | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 38222 | 38437 |
| YP_009067115.1 | NC_025115_p38 | protein of an unannotated phage | phrog_8 | transcriptional regulator | transcription regulation | -1 | 32298 | 33104 |
| YP_009067121.1 | NC_025115_p44 | protein of an unannotated phage | phrog_24813 | unknown function | unknown function | 1 | 34809 | 35024 |
| YP_009067124.1 | NC_025115_p47 | protein of an unannotated phage | phrog_1139 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 35520 | 38225 |
| YP_009067097.1 | NC_025115_p20 | protein of an unannotated phage | phrog_3598 | transposase | integration and excision | -1 | 17718 | 18683 |
| YP_009067095.1 | NC_025115_p18 | protein of an unannotated phage | phrog_26 | tail completion or Neck1 protein | connector | 1 | 16522 | 16968 |
| YP_009067103.1 | NC_025115_p26 | protein of an unannotated phage | phrog_1807 | tail fiber protein | tail | 1 | 23025 | 23777 |
| YP_009067109.1 | NC_025115_p32 | protein of an unannotated phage | phrog_28 | tail length tape measure protein | tail | 1 | 27422 | 29167 |
| YP_009067099.1 | NC_025115_p22 | protein of an unannotated phage | phrog_43 | baseplate wedge subunit | tail | 1 | 19484 | 19822 |
| YP_009067100.1 | NC_025115_p23 | protein of an unannotated phage | phrog_6 | baseplate wedge subunit | tail | 1 | 19825 | 20733 |
| YP_009067082.1 | NC_025115_p5 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 5342 | 7582 |
| YP_009067092.1 | NC_025115_p15 | protein of an unannotated phage | phrog_1224 | endolysin | head and packaging | 1 | 14791 | 15597 |
| YP_009067126.1 | NC_025115_p49 | protein of an unannotated phage | phrog_1 | integrase | integration and excision | -1 | 38412 | 39647 |
| YP_009067083.1 | NC_025115_p6 | protein of an unannotated phage | phrog_68 | portal protein | head and packaging | -1 | 7649 | 8734 |
| YP_009067106.1 | NC_025115_p29 | protein of an unannotated phage | phrog_55 | head closure | connector | 1 | 25544 | 26053 |
| YP_009067105.1 | NC_025115_p28 | protein of an unannotated phage | phrog_23 | tail sheath | tail | 1 | 24337 | 25512 |
| YP_009067110.1 | NC_025115_p33 | protein of an unannotated phage | phrog_76 | tail protein | tail | 1 | 29170 | 29592 |
| YP_009067085.1 | NC_025115_p8 | protein of an unannotated phage | phrog_73 | head scaffolding protein | head and packaging | 1 | 10656 | 11495 |
| YP_009067087.1 | NC_025115_p10 | protein of an unannotated phage | phrog_74 | terminase small subunit | head and packaging | 1 | 12562 | 13284 |
| YP_009067086.1 | NC_025115_p9 | protein of an unannotated phage | phrog_70 | major head protein | head and packaging | 1 | 11549 | 12565 |
| YP_009067102.1 | NC_025115_p25 | protein of an unannotated phage | phrog_327 | tail protein | tail | 1 | 21348 | 23012 |
| YP_009067090.1 | NC_025115_p13 | protein of an unannotated phage | phrog_198 | holin | lysis | 1 | 14082 | 14486 |
| YP_009067089.1 | NC_025115_p12 | protein of an unannotated phage | phrog_46 | baseplate hub | tail | 1 | 13860 | 14066 |
| YP_009067084.1 | NC_025115_p7 | protein of an unannotated phage | phrog_2 | terminase large subunit | head and packaging | -1 | 8731 | 10512 |
| YP_009067094.1 | NC_025115_p17 | protein of an unannotated phage | phrog_65 | tail terminator | connector | 1 | 16091 | 16525 |
| YP_009067116.1 | NC_025115_p39 | protein of an unannotated phage | phrog_9850 | unknown function | unknown function | 1 | 33287 | 33481 |
| YP_009067123.1 | NC_025115_p46 | protein of an unannotated phage | phrog_6236 | unknown function | unknown function | 1 | 35259 | 35465 |
| YP_009067111.1 | NC_025115_p34 | protein of an unannotated phage | phrog_52 | tail protein | tail | 1 | 29589 | 30689 |
| YP_009067122.1 | NC_025115_p45 | protein of an unannotated phage | phrog_22312 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 35021 | 35266 |
| YP_009067119.1 | NC_025115_p42 | protein of an unannotated phage | phrog_24608 | unknown function | unknown function | 1 | 34409 | 34648 |
| YP_009067108.1 | NC_025115_p31 | protein of an unannotated phage | phrog_10546 | unknown function | unknown function | 1 | 26551 | 27429 |
| YP_009067091.1 | NC_025115_p14 | protein of an unannotated phage | phrog_217 | holin | lysis | 1 | 14483 | 14794 |
| YP_009067104.1 | NC_025115_p27 | protein of an unannotated phage | phrog_1128 | enoyl-CoA hydratase/carnithine racemase-like | moron, auxiliary metabolic gene and host takeover | 1 | 23774 | 24238 |
| YP_009067101.1 | NC_025115_p24 | protein of an unannotated phage | phrog_48 | tail protein | tail | 1 | 20726 | 21343 |
| YP_009067118.1 | NC_025115_p41 | protein of an unannotated phage | phrog_5060 | anti-repressor Ant | transcription regulation | 1 | 33842 | 34396 |
| YP_009067093.1 | NC_025115_p16 | protein of an unannotated phage | phrog_4952 | signal peptide motif | other | 1 | 15594 | 16094 |
| YP_009067088.1 | NC_025115_p11 | protein of an unannotated phage | phrog_71 | head-tail adaptor Ad1 | connector | 1 | 13333 | 13860 |
| YP_009067107.1 | NC_025115_p30 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 26084 | 26554 |
| YP_009067096.1 | NC_025115_p19 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 16991 | 17443 |
| YP_009067098.1 | NC_025115_p21 | protein of an unannotated phage | phrog_11 | baseplate spike | tail | 1 | 18861 | 19478 |
| YP_009067112.1 | NC_025115_p35 | protein of an unannotated phage | phrog_3008 | DNA methyltransferase | other | 1 | 30713 | 31072 |
| YP_009067079.1 | NC_025115_p2 | protein of an unannotated phage | phrog_34729 | unknown function | unknown function | 1 | 960 | 3620 |
| YP_009067113.1 | NC_025115_p36 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 31077 | 31628 |
| YP_009067117.1 | NC_025115_p40 | protein of an unannotated phage | phrog_603 | transcriptional regulator | transcription regulation | 1 | 33478 | 33726 |
| YP_009067081.1 | NC_025115_p4 | protein of an unannotated phage | phrog_32974 | unknown function | unknown function | 1 | 4491 | 5336 |
| YP_009067120.1 | NC_025115_p43 | protein of an unannotated phage | phrog_27455 | unknown function | unknown function | 1 | 34645 | 34812 |
| YP_009067078.1 | NC_025115_p1 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 546 | 842 |