Genomic map of Lactobacillus phage Ld25A (NC_025415)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_025415
Definition
Lactobacillus phage Ld25A, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cequinquevirus.
DB of origin
REFSEQ
Length
32799
Host Name
Lactobacillus delbrueckii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
51
%GC
41.66
Number of singletons
0
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009097924.1 NC_025415_p45 hypothetical protein phrog_14354 unknown function unknown function 1 29662 29901
YP_009097887.1 NC_025415_p8 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 5866 6162
YP_009097883.1 NC_025415_p4 portal protein phrog_12 portal protein head and packaging 1 2698 3912
YP_009097900.1 NC_025415_p21 hypothetical protein phrog_13632 unknown function unknown function 1 18700 19059
YP_009097880.1 NC_025415_p1 ParB nuclease phrog_18056 ParB-like partition nuclease DNA, RNA and nucleotide metabolism 1 90 515
YP_009097926.1 NC_025415_p47 hypothetical protein phrog_15092 unknown function unknown function 1 30134 30622
YP_009097919.1 NC_025415_p40 hypothetical protein phrog_9702 unknown function unknown function 1 28427 28591
YP_009097925.1 NC_025415_p46 hypothetical protein phrog_15049 unknown function unknown function 1 29898 30137
YP_009097895.1 NC_025415_p16 hypothetical protein phrog_1084 unknown function unknown function 1 12112 12450
YP_009097920.1 NC_025415_p41 hypothetical protein phrog_9702 unknown function unknown function 1 28606 28770
YP_009097897.1 NC_025415_p18 collagen repeats protein phrog_4440 tail fiber protein tail 1 15248 16243
YP_009097902.1 NC_025415_p23 hypothetical protein phrog_15036 unknown function unknown function 1 19655 19825
YP_009097899.1 NC_025415_p20 antireceptor phrog_1067 minor head protein head and packaging 1 16804 18687
YP_009097930.1 NC_025415_p51 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 32328 32708
YP_009097906.1 NC_025415_p27 hypothetical protein phrog_298 exonuclease DNA, RNA and nucleotide metabolism 1 21040 21645
YP_009097915.1 NC_025415_p36 antirepressor protein phrog_130 anti-repressor Ant transcription regulation 1 25915 26706
YP_009097901.1 NC_025415_p22 Cro-like repressor phrog_3 transcriptional repressor transcription regulation 1 19449 19652
YP_009097918.1 NC_025415_p39 hypothetical protein phrog_888 unknown function unknown function 1 27999 28400
YP_009097905.1 NC_025415_p26 hypothetical protein phrog_6244 unknown function unknown function 1 20718 21035
YP_009097888.1 NC_025415_p9 head-tail adaptor phrog_25 head closure Hc1 connector 1 6173 6526
YP_009097923.1 NC_025415_p44 hypothetical protein phrog_13668 unknown function unknown function 1 29399 29665
YP_009097917.1 NC_025415_p38 hypothetical protein phrog_9702 unknown function unknown function 1 27771 27959
YP_009097927.1 NC_025415_p48 hypothetical protein phrog_14005 unknown function unknown function 1 30628 30801
YP_009097904.1 NC_025415_p25 hypothetical protein phrog_14315 unknown function unknown function 1 20447 20725
YP_009097916.1 NC_025415_p37 antirepressor protein phrog_130 anti-repressor Ant transcription regulation 1 26871 27629
YP_009097908.1 NC_025415_p29 hypothetical protein phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 22107 22646
YP_009097890.1 NC_025415_p11 hypothetical protein phrog_78 tail terminator connector 1 6950 7291
YP_009097885.1 NC_025415_p6 major head protein phrog_10 major head protein head and packaging 1 4510 5697
YP_009097922.1 NC_025415_p43 hypothetical protein phrog_15640 unknown function unknown function 1 28996 29208
YP_009097914.1 NC_025415_p35 DnaC phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 24942 25757
YP_009097928.1 NC_025415_p49 holin phrog_1299 holin lysis 1 31133 31426
YP_009097921.1 NC_025415_p42 hypothetical protein phrog_21051 unknown function unknown function 1 28785 29009
YP_009097907.1 NC_025415_p28 single-stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 21635 22096
YP_009097892.1 NC_025415_p13 hypothetical protein phrog_2115 tail protein tail 1 7898 8248
YP_009097912.1 NC_025415_p33 hypothetical protein phrog_11233 replication initiation protein DNA, RNA and nucleotide metabolism 1 23795 24136
YP_009097929.1 NC_025415_p50 lysin phrog_291 endolysin lysis 1 31419 32324
YP_009097886.1 NC_025415_p7 hypothetical protein phrog_6865 unknown function unknown function 1 5706 5873
YP_009097882.1 NC_025415_p3 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1002 2681
YP_009097884.1 NC_025415_p5 ClpP protease phrog_80 head maturation protease head and packaging 1 3902 4507
YP_009097893.1 NC_025415_p14 tape measure protein phrog_58 tail length tape measure protein tail 1 8493 11399
YP_009097891.1 NC_025415_p12 major tail protein phrog_88 major tail protein tail 1 7306 7878
YP_009097898.1 NC_025415_p19 adsorption protein phrog_5499 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 16248 16802
YP_009097894.1 NC_025415_p15 tail component phrog_33 distal tail protein Dit tail 1 11411 12115
YP_009097881.1 NC_025415_p2 hypothetical protein phrog_13845 unknown function unknown function 1 647 1012
YP_009097913.1 NC_025415_p34 DNA replication protein phrog_678 replication initiation O-like DNA, RNA and nucleotide metabolism 1 24164 24973
YP_009097889.1 NC_025415_p10 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 6526 6957
YP_009097896.1 NC_025415_p17 glycerophosphoryl diesterphosphodiesterase phrog_13515 phosphodiesterase other 1 12464 15100
YP_009097909.1 NC_025415_p30 hypothetical protein phrog_7566 unknown function unknown function 1 22627 22908
YP_009097903.1 NC_025415_p24 hypothetical protein phrog_11717 unknown function unknown function 1 19818 20444
YP_009097911.1 NC_025415_p32 hypothetical protein phrog_13519 unknown function unknown function 1 23588 23740
YP_009097910.1 NC_025415_p31 holliday junction resolvase phrog_1682 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 22905 23276