| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_025415 |
Definition |
Lactobacillus phage Ld25A, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cequinquevirus. |
DB of origin |
REFSEQ |
Length |
32799 |
Host Name |
Lactobacillus delbrueckii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
51 |
%GC |
41.66 |
Number of singletons |
0 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009097924.1 | NC_025415_p45 | hypothetical protein | phrog_14354 | unknown function | unknown function | 1 | 29662 | 29901 |
| YP_009097887.1 | NC_025415_p8 | hypothetical protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5866 | 6162 |
| YP_009097883.1 | NC_025415_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2698 | 3912 |
| YP_009097900.1 | NC_025415_p21 | hypothetical protein | phrog_13632 | unknown function | unknown function | 1 | 18700 | 19059 |
| YP_009097880.1 | NC_025415_p1 | ParB nuclease | phrog_18056 | ParB-like partition nuclease | DNA, RNA and nucleotide metabolism | 1 | 90 | 515 |
| YP_009097926.1 | NC_025415_p47 | hypothetical protein | phrog_15092 | unknown function | unknown function | 1 | 30134 | 30622 |
| YP_009097919.1 | NC_025415_p40 | hypothetical protein | phrog_9702 | unknown function | unknown function | 1 | 28427 | 28591 |
| YP_009097925.1 | NC_025415_p46 | hypothetical protein | phrog_15049 | unknown function | unknown function | 1 | 29898 | 30137 |
| YP_009097895.1 | NC_025415_p16 | hypothetical protein | phrog_1084 | unknown function | unknown function | 1 | 12112 | 12450 |
| YP_009097920.1 | NC_025415_p41 | hypothetical protein | phrog_9702 | unknown function | unknown function | 1 | 28606 | 28770 |
| YP_009097897.1 | NC_025415_p18 | collagen repeats protein | phrog_4440 | tail fiber protein | tail | 1 | 15248 | 16243 |
| YP_009097902.1 | NC_025415_p23 | hypothetical protein | phrog_15036 | unknown function | unknown function | 1 | 19655 | 19825 |
| YP_009097899.1 | NC_025415_p20 | antireceptor | phrog_1067 | minor head protein | head and packaging | 1 | 16804 | 18687 |
| YP_009097930.1 | NC_025415_p51 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 32328 | 32708 |
| YP_009097906.1 | NC_025415_p27 | hypothetical protein | phrog_298 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 21040 | 21645 |
| YP_009097915.1 | NC_025415_p36 | antirepressor protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 25915 | 26706 |
| YP_009097901.1 | NC_025415_p22 | Cro-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 19449 | 19652 |
| YP_009097918.1 | NC_025415_p39 | hypothetical protein | phrog_888 | unknown function | unknown function | 1 | 27999 | 28400 |
| YP_009097905.1 | NC_025415_p26 | hypothetical protein | phrog_6244 | unknown function | unknown function | 1 | 20718 | 21035 |
| YP_009097888.1 | NC_025415_p9 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 6173 | 6526 |
| YP_009097923.1 | NC_025415_p44 | hypothetical protein | phrog_13668 | unknown function | unknown function | 1 | 29399 | 29665 |
| YP_009097917.1 | NC_025415_p38 | hypothetical protein | phrog_9702 | unknown function | unknown function | 1 | 27771 | 27959 |
| YP_009097927.1 | NC_025415_p48 | hypothetical protein | phrog_14005 | unknown function | unknown function | 1 | 30628 | 30801 |
| YP_009097904.1 | NC_025415_p25 | hypothetical protein | phrog_14315 | unknown function | unknown function | 1 | 20447 | 20725 |
| YP_009097916.1 | NC_025415_p37 | antirepressor protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 26871 | 27629 |
| YP_009097908.1 | NC_025415_p29 | hypothetical protein | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 22107 | 22646 |
| YP_009097890.1 | NC_025415_p11 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 6950 | 7291 |
| YP_009097885.1 | NC_025415_p6 | major head protein | phrog_10 | major head protein | head and packaging | 1 | 4510 | 5697 |
| YP_009097922.1 | NC_025415_p43 | hypothetical protein | phrog_15640 | unknown function | unknown function | 1 | 28996 | 29208 |
| YP_009097914.1 | NC_025415_p35 | DnaC | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 24942 | 25757 |
| YP_009097928.1 | NC_025415_p49 | holin | phrog_1299 | holin | lysis | 1 | 31133 | 31426 |
| YP_009097921.1 | NC_025415_p42 | hypothetical protein | phrog_21051 | unknown function | unknown function | 1 | 28785 | 29009 |
| YP_009097907.1 | NC_025415_p28 | single-stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 21635 | 22096 |
| YP_009097892.1 | NC_025415_p13 | hypothetical protein | phrog_2115 | tail protein | tail | 1 | 7898 | 8248 |
| YP_009097912.1 | NC_025415_p33 | hypothetical protein | phrog_11233 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 23795 | 24136 |
| YP_009097929.1 | NC_025415_p50 | lysin | phrog_291 | endolysin | lysis | 1 | 31419 | 32324 |
| YP_009097886.1 | NC_025415_p7 | hypothetical protein | phrog_6865 | unknown function | unknown function | 1 | 5706 | 5873 |
| YP_009097882.1 | NC_025415_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1002 | 2681 |
| YP_009097884.1 | NC_025415_p5 | ClpP protease | phrog_80 | head maturation protease | head and packaging | 1 | 3902 | 4507 |
| YP_009097893.1 | NC_025415_p14 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 8493 | 11399 |
| YP_009097891.1 | NC_025415_p12 | major tail protein | phrog_88 | major tail protein | tail | 1 | 7306 | 7878 |
| YP_009097898.1 | NC_025415_p19 | adsorption protein | phrog_5499 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 16248 | 16802 |
| YP_009097894.1 | NC_025415_p15 | tail component | phrog_33 | distal tail protein Dit | tail | 1 | 11411 | 12115 |
| YP_009097881.1 | NC_025415_p2 | hypothetical protein | phrog_13845 | unknown function | unknown function | 1 | 647 | 1012 |
| YP_009097913.1 | NC_025415_p34 | DNA replication protein | phrog_678 | replication initiation O-like | DNA, RNA and nucleotide metabolism | 1 | 24164 | 24973 |
| YP_009097889.1 | NC_025415_p10 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6526 | 6957 |
| YP_009097896.1 | NC_025415_p17 | glycerophosphoryl diesterphosphodiesterase | phrog_13515 | phosphodiesterase | other | 1 | 12464 | 15100 |
| YP_009097909.1 | NC_025415_p30 | hypothetical protein | phrog_7566 | unknown function | unknown function | 1 | 22627 | 22908 |
| YP_009097903.1 | NC_025415_p24 | hypothetical protein | phrog_11717 | unknown function | unknown function | 1 | 19818 | 20444 |
| YP_009097911.1 | NC_025415_p32 | hypothetical protein | phrog_13519 | unknown function | unknown function | 1 | 23588 | 23740 |
| YP_009097910.1 | NC_025415_p31 | holliday junction resolvase | phrog_1682 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 22905 | 23276 |