| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_025420 |
Definition |
Lactobacillus phage Ld17, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cequinquevirus. |
DB of origin |
REFSEQ |
Length |
32975 |
Host Name |
Lactobacillus delbrueckii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
50 |
%GC |
41.49 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009098675.1 | NC_025420_p16 | tail component | phrog_33 | distal tail protein Dit | tail | 1 | 12371 | 13075 |
| YP_009098703.1 | NC_025420_p44 | hypothetical protein | phrog_15049 | unknown function | unknown function | 1 | 29848 | 30096 |
| YP_009098684.1 | NC_025420_p25 | hypothetical protein | phrog_14315 | unknown function | unknown function | 1 | 21517 | 21786 |
| YP_009098704.1 | NC_025420_p45 | hypothetical protein | phrog_15092 | unknown function | unknown function | 1 | 30081 | 30584 |
| YP_009098708.1 | NC_025420_p49 | lysin | phrog_291 | endolysin | lysis | 1 | 31594 | 32496 |
| YP_009098702.1 | NC_025420_p43 | hypothetical protein | phrog_14354 | unknown function | unknown function | 1 | 29612 | 29851 |
| YP_009098687.1 | NC_025420_p28 | single-stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 22693 | 23154 |
| YP_009098688.1 | NC_025420_p29 | hypothetical protein | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 23165 | 23692 |
| YP_009098698.1 | NC_025420_p39 | hypothetical protein | phrog_9702 | unknown function | unknown function | 1 | 28188 | 28376 |
| YP_009098705.1 | NC_025420_p46 | hypothetical protein | phrog_14005 | unknown function | unknown function | 1 | 30590 | 30763 |
| YP_009098700.1 | NC_025420_p41 | hypothetical protein | phrog_15640 | unknown function | unknown function | 1 | 28941 | 29147 |
| YP_009098695.1 | NC_025420_p36 | DnaC | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 26292 | 27110 |
| YP_009098706.1 | NC_025420_p47 | hypothetical protein | phrog_9702 | unknown function | unknown function | 1 | 30985 | 31185 |
| YP_009098692.1 | NC_025420_p33 | hypothetical protein | phrog_25027 | unknown function | unknown function | 1 | 24989 | 25297 |
| YP_009098662.1 | NC_025420_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1269 | 2948 |
| YP_009098690.1 | NC_025420_p31 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 23965 | 24456 |
| YP_009098694.1 | NC_025420_p35 | DNA replication protein | phrog_678 | replication initiation O-like | DNA, RNA and nucleotide metabolism | 1 | 25520 | 26326 |
| YP_009098673.1 | NC_025420_p14 | hypothetical protein | phrog_2115 | tail protein | tail | 1 | 8858 | 9208 |
| YP_009098669.1 | NC_025420_p10 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 7127 | 7480 |
| YP_009098682.1 | NC_025420_p23 | Cro-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 20523 | 20726 |
| YP_009098699.1 | NC_025420_p40 | hypothetical protein | phrog_3784 | unknown function | unknown function | 1 | 28442 | 28957 |
| YP_009098674.1 | NC_025420_p15 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 9453 | 12359 |
| YP_009098661.1 | NC_025420_p2 | hypothetical protein | phrog_13845 | unknown function | unknown function | 1 | 914 | 1279 |
| YP_009098678.1 | NC_025420_p19 | collagen repeats protein | phrog_4440 | tail fiber protein | tail | 1 | 16209 | 17210 |
| YP_009098693.1 | NC_025420_p34 | hypothetical protein | phrog_13519 | unknown function | unknown function | 1 | 25299 | 25451 |
| YP_009098670.1 | NC_025420_p11 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7480 | 7911 |
| YP_009098686.1 | NC_025420_p27 | hypothetical protein | phrog_298 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 22098 | 22703 |
| YP_009098676.1 | NC_025420_p17 | hypothetical protein | phrog_1084 | unknown function | unknown function | 1 | 13075 | 13410 |
| YP_009098691.1 | NC_025420_p32 | holliday junction resolvase | phrog_1682 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 24453 | 24830 |
| YP_009098671.1 | NC_025420_p12 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 7904 | 8245 |
| YP_009098660.1 | NC_025420_p1 | hypothetical protein | phrog_842 | beta-glucosyl-HMC-alpha-glucosyltransferase | other | 1 | 75 | 833 |
| YP_009098666.1 | NC_025420_p7 | major head protein | phrog_10 | major head protein | head and packaging | 1 | 5455 | 6642 |
| YP_009098663.1 | NC_025420_p4 | truncated GIY-YIG endonuclease | phrog_314 | homing endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2948 | 3610 |
| YP_009098667.1 | NC_025420_p8 | hypothetical protein | phrog_6865 | unknown function | unknown function | 1 | 6660 | 6827 |
| YP_009098709.1 | NC_025420_p50 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 32500 | 32880 |
| YP_009098689.1 | NC_025420_p30 | hypothetical protein | phrog_7566 | unknown function | unknown function | 1 | 23685 | 23972 |
| YP_009098664.1 | NC_025420_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3643 | 4857 |
| YP_009098681.1 | NC_025420_p22 | hypothetical protein | phrog_13632 | unknown function | unknown function | 1 | 19772 | 20131 |
| YP_009098701.1 | NC_025420_p42 | hypothetical protein | phrog_13668 | unknown function | unknown function | 1 | 29352 | 29615 |
| YP_009098697.1 | NC_025420_p38 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 27596 | 28045 |
| YP_009098683.1 | NC_025420_p24 | hypothetical protein | phrog_11717 | unknown function | unknown function | 1 | 20892 | 21467 |
| YP_009098679.1 | NC_025420_p20 | adsorption protein | phrog_5499 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 17215 | 17814 |
| YP_009098668.1 | NC_025420_p9 | hypothetical protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 6820 | 7116 |
| YP_009098685.1 | NC_025420_p26 | hypothetical protein | phrog_6244 | unknown function | unknown function | 1 | 21779 | 22096 |
| YP_009098707.1 | NC_025420_p48 | holin | phrog_1299 | holin | lysis | 1 | 31293 | 31607 |
| YP_009098677.1 | NC_025420_p18 | glycerophosphoryl diesterphosphodiesterase | phrog_13515 | phosphodiesterase | other | 1 | 13424 | 16060 |
| YP_009098672.1 | NC_025420_p13 | major tail protein | phrog_88 | major tail protein | tail | 1 | 8266 | 8838 |
| YP_009098680.1 | NC_025420_p21 | antireceptor | phrog_1067 | minor head protein | head and packaging | 1 | 17816 | 19759 |
| YP_009098665.1 | NC_025420_p6 | ClpP protease | phrog_80 | head maturation protease | head and packaging | 1 | 4847 | 5452 |
| YP_009098696.1 | NC_025420_p37 | antirepressor | phrog_2977 | anti-repressor | transcription regulation | 1 | 27263 | 27550 |