Genomic map of Lactobacillus phage Ld17 (NC_025420)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_025420
Definition
Lactobacillus phage Ld17, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cequinquevirus.
DB of origin
REFSEQ
Length
32975
Host Name
Lactobacillus delbrueckii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
50
%GC
41.49
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009098675.1 NC_025420_p16 tail component phrog_33 distal tail protein Dit tail 1 12371 13075
YP_009098703.1 NC_025420_p44 hypothetical protein phrog_15049 unknown function unknown function 1 29848 30096
YP_009098684.1 NC_025420_p25 hypothetical protein phrog_14315 unknown function unknown function 1 21517 21786
YP_009098704.1 NC_025420_p45 hypothetical protein phrog_15092 unknown function unknown function 1 30081 30584
YP_009098708.1 NC_025420_p49 lysin phrog_291 endolysin lysis 1 31594 32496
YP_009098702.1 NC_025420_p43 hypothetical protein phrog_14354 unknown function unknown function 1 29612 29851
YP_009098687.1 NC_025420_p28 single-stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 22693 23154
YP_009098688.1 NC_025420_p29 hypothetical protein phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 23165 23692
YP_009098698.1 NC_025420_p39 hypothetical protein phrog_9702 unknown function unknown function 1 28188 28376
YP_009098705.1 NC_025420_p46 hypothetical protein phrog_14005 unknown function unknown function 1 30590 30763
YP_009098700.1 NC_025420_p41 hypothetical protein phrog_15640 unknown function unknown function 1 28941 29147
YP_009098695.1 NC_025420_p36 DnaC phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 26292 27110
YP_009098706.1 NC_025420_p47 hypothetical protein phrog_9702 unknown function unknown function 1 30985 31185
YP_009098692.1 NC_025420_p33 hypothetical protein phrog_25027 unknown function unknown function 1 24989 25297
YP_009098662.1 NC_025420_p3 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1269 2948
YP_009098690.1 NC_025420_p31 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 23965 24456
YP_009098694.1 NC_025420_p35 DNA replication protein phrog_678 replication initiation O-like DNA, RNA and nucleotide metabolism 1 25520 26326
YP_009098673.1 NC_025420_p14 hypothetical protein phrog_2115 tail protein tail 1 8858 9208
YP_009098669.1 NC_025420_p10 head-tail adaptor phrog_25 head closure Hc1 connector 1 7127 7480
YP_009098682.1 NC_025420_p23 Cro-like repressor phrog_3 transcriptional repressor transcription regulation 1 20523 20726
YP_009098699.1 NC_025420_p40 hypothetical protein phrog_3784 unknown function unknown function 1 28442 28957
YP_009098674.1 NC_025420_p15 tape measure protein phrog_58 tail length tape measure protein tail 1 9453 12359
YP_009098661.1 NC_025420_p2 hypothetical protein phrog_13845 unknown function unknown function 1 914 1279
YP_009098678.1 NC_025420_p19 collagen repeats protein phrog_4440 tail fiber protein tail 1 16209 17210
YP_009098693.1 NC_025420_p34 hypothetical protein phrog_13519 unknown function unknown function 1 25299 25451
YP_009098670.1 NC_025420_p11 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 7480 7911
YP_009098686.1 NC_025420_p27 hypothetical protein phrog_298 exonuclease DNA, RNA and nucleotide metabolism 1 22098 22703
YP_009098676.1 NC_025420_p17 hypothetical protein phrog_1084 unknown function unknown function 1 13075 13410
YP_009098691.1 NC_025420_p32 holliday junction resolvase phrog_1682 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 24453 24830
YP_009098671.1 NC_025420_p12 hypothetical protein phrog_78 tail terminator connector 1 7904 8245
YP_009098660.1 NC_025420_p1 hypothetical protein phrog_842 beta-glucosyl-HMC-alpha-glucosyltransferase other 1 75 833
YP_009098666.1 NC_025420_p7 major head protein phrog_10 major head protein head and packaging 1 5455 6642
YP_009098663.1 NC_025420_p4 truncated GIY-YIG endonuclease phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism 1 2948 3610
YP_009098667.1 NC_025420_p8 hypothetical protein phrog_6865 unknown function unknown function 1 6660 6827
YP_009098709.1 NC_025420_p50 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 32500 32880
YP_009098689.1 NC_025420_p30 hypothetical protein phrog_7566 unknown function unknown function 1 23685 23972
YP_009098664.1 NC_025420_p5 portal protein phrog_12 portal protein head and packaging 1 3643 4857
YP_009098681.1 NC_025420_p22 hypothetical protein phrog_13632 unknown function unknown function 1 19772 20131
YP_009098701.1 NC_025420_p42 hypothetical protein phrog_13668 unknown function unknown function 1 29352 29615
YP_009098697.1 NC_025420_p38 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 27596 28045
YP_009098683.1 NC_025420_p24 hypothetical protein phrog_11717 unknown function unknown function 1 20892 21467
YP_009098679.1 NC_025420_p20 adsorption protein phrog_5499 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 17215 17814
YP_009098668.1 NC_025420_p9 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 6820 7116
YP_009098685.1 NC_025420_p26 hypothetical protein phrog_6244 unknown function unknown function 1 21779 22096
YP_009098707.1 NC_025420_p48 holin phrog_1299 holin lysis 1 31293 31607
YP_009098677.1 NC_025420_p18 glycerophosphoryl diesterphosphodiesterase phrog_13515 phosphodiesterase other 1 13424 16060
YP_009098672.1 NC_025420_p13 major tail protein phrog_88 major tail protein tail 1 8266 8838
YP_009098680.1 NC_025420_p21 antireceptor phrog_1067 minor head protein head and packaging 1 17816 19759
YP_009098665.1 NC_025420_p6 ClpP protease phrog_80 head maturation protease head and packaging 1 4847 5452
YP_009098696.1 NC_025420_p37 antirepressor phrog_2977 anti-repressor transcription regulation 1 27263 27550