Genomic map of Lactobacillus phage Ld3 (NC_025421)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_025421
Definition
Lactobacillus phage Ld3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cequinquevirus.
DB of origin
REFSEQ
Length
29616
Host Name
Lactobacillus delbrueckii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
41.64
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009098713.1 NC_025421_p4 portal protein phrog_12 portal protein head and packaging 1 2272 3486
YP_009098737.1 NC_025421_p28 hypothetical protein phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 20047 20574
YP_009098740.1 NC_025421_p31 holliday junction resolvase phrog_1682 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 21335 21697
YP_009098730.1 NC_025421_p21 hypothetical protein phrog_15036 unknown function unknown function 1 17609 17779
YP_009098718.1 NC_025421_p9 head-tail adaptor phrog_25 head closure Hc1 connector 1 5771 6124
YP_009098719.1 NC_025421_p10 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 6124 6555
YP_009098733.1 NC_025421_p24 hypothetical protein phrog_14315 unknown function unknown function 1 18399 18668
YP_009098757.1 NC_025421_p48 endolysin phrog_291 endolysin lysis 1 28235 29137
YP_009098723.1 NC_025421_p14 tape measure protein phrog_58 tail length tape measure protein tail 1 8091 10997
YP_009098751.1 NC_025421_p42 hypothetical protein phrog_14354 unknown function unknown function 1 26251 26490
YP_009098752.1 NC_025421_p43 hypothetical protein phrog_15049 unknown function unknown function 1 26487 26735
YP_009098717.1 NC_025421_p8 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 5449 5760
YP_009098755.1 NC_025421_p46 hypothetical protein phrog_9702 unknown function unknown function 1 27626 27826
YP_009098746.1 NC_025421_p37 antirepressor phrog_2899 anti-repressor Ant transcription regulation 1 24586 24933
YP_009098756.1 NC_025421_p47 holin phrog_1299 holin lysis 1 27934 28248
YP_009098725.1 NC_025421_p16 hypothetical protein phrog_1084 unknown function unknown function 1 11710 12048
YP_009098753.1 NC_025421_p44 hypothetical protein phrog_15092 unknown function unknown function 1 26796 27224
YP_009098749.1 NC_025421_p40 hypothetical protein singleton unknown function unknown function 1 25670 25981
YP_009098747.1 NC_025421_p38 antirepressor phrog_9438 anti-repressor transcription regulation 1 24930 25271
YP_009098750.1 NC_025421_p41 hypothetical protein phrog_13668 unknown function unknown function 1 26036 26254
YP_009098714.1 NC_025421_p5 ClpP protease phrog_80 head maturation protease head and packaging 1 3476 4081
YP_009098745.1 NC_025421_p36 DnaC phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 23698 24513
YP_009098743.1 NC_025421_p34 DNA replication protein phrog_151 transposase integration and excision 1 22580 22870
YP_009098727.1 NC_025421_p18 antireceptor phrog_1067 minor head protein head and packaging 1 14718 16640
YP_009098748.1 NC_025421_p39 hypothetical protein singleton unknown function unknown function 1 25458 25604
YP_009098728.1 NC_025421_p19 hypothetical protein phrog_13632 unknown function unknown function 1 16653 17012
YP_009098716.1 NC_025421_p7 hypothetical protein phrog_6865 unknown function unknown function 1 5289 5456
YP_009098726.1 NC_025421_p17 glycerophosphoryl diester phosphodiesterase phrog_13515 phosphodiesterase other 1 12062 14698
YP_009098754.1 NC_025421_p45 hypothetical protein phrog_14005 unknown function unknown function 1 27230 27391
YP_009098732.1 NC_025421_p23 hypothetical protein phrog_11717 unknown function unknown function 1 17938 18396
YP_009098741.1 NC_025421_p32 hypothetical protein phrog_13519 unknown function unknown function 1 22011 22163
YP_009098729.1 NC_025421_p20 Cro-like repressor phrog_3 transcriptional repressor transcription regulation 1 17403 17606
YP_009098715.1 NC_025421_p6 major head protein phrog_10 major head protein head and packaging 1 4084 5271
YP_009098735.1 NC_025421_p26 hypothetical protein phrog_298 exonuclease DNA, RNA and nucleotide metabolism 1 18980 19585
YP_009098711.1 NC_025421_p2 hypothetical protein phrog_13845 unknown function unknown function 1 221 586
YP_009098721.1 NC_025421_p12 major tail protein phrog_88 major tail protein tail 1 6904 7476
YP_009098720.1 NC_025421_p11 hypothetical protein phrog_78 tail terminator connector 1 6548 6889
YP_009098742.1 NC_025421_p33 hypothetical protein phrog_11233 replication initiation protein DNA, RNA and nucleotide metabolism 1 22235 22555
YP_009098724.1 NC_025421_p15 tail component phrog_33 distal tail protein Dit tail 1 11009 11713
YP_009098731.1 NC_025421_p22 hypothetical protein singleton unknown function unknown function 1 17772 17918
YP_009098736.1 NC_025421_p27 single-stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 19575 20036
YP_009098722.1 NC_025421_p13 hypothetical protein phrog_2115 tail protein tail 1 7496 7846
YP_009098738.1 NC_025421_p29 hypothetical protein phrog_7566 unknown function unknown function 1 20567 20854
YP_009098758.1 NC_025421_p49 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 29141 29521
YP_009098734.1 NC_025421_p25 hypothetical protein phrog_6244 unknown function unknown function 1 18661 18978
YP_009098739.1 NC_025421_p30 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 20847 21338
YP_009098744.1 NC_025421_p35 DNA replication protein phrog_678 replication initiation O-like DNA, RNA and nucleotide metabolism 1 22884 23729
YP_009098710.1 NC_025421_p1 ParB nuclease singleton unknown function unknown function 1 90 191
YP_009098712.1 NC_025421_p3 terminase large subunit phrog_9 terminase large subunit head and packaging 1 576 2255