| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_025421 |
Definition |
Lactobacillus phage Ld3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cequinquevirus. |
DB of origin |
REFSEQ |
Length |
29616 |
Host Name |
Lactobacillus delbrueckii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
41.64 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009098713.1 | NC_025421_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2272 | 3486 |
| YP_009098737.1 | NC_025421_p28 | hypothetical protein | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 20047 | 20574 |
| YP_009098740.1 | NC_025421_p31 | holliday junction resolvase | phrog_1682 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 21335 | 21697 |
| YP_009098730.1 | NC_025421_p21 | hypothetical protein | phrog_15036 | unknown function | unknown function | 1 | 17609 | 17779 |
| YP_009098718.1 | NC_025421_p9 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 5771 | 6124 |
| YP_009098719.1 | NC_025421_p10 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6124 | 6555 |
| YP_009098733.1 | NC_025421_p24 | hypothetical protein | phrog_14315 | unknown function | unknown function | 1 | 18399 | 18668 |
| YP_009098757.1 | NC_025421_p48 | endolysin | phrog_291 | endolysin | lysis | 1 | 28235 | 29137 |
| YP_009098723.1 | NC_025421_p14 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 8091 | 10997 |
| YP_009098751.1 | NC_025421_p42 | hypothetical protein | phrog_14354 | unknown function | unknown function | 1 | 26251 | 26490 |
| YP_009098752.1 | NC_025421_p43 | hypothetical protein | phrog_15049 | unknown function | unknown function | 1 | 26487 | 26735 |
| YP_009098717.1 | NC_025421_p8 | hypothetical protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5449 | 5760 |
| YP_009098755.1 | NC_025421_p46 | hypothetical protein | phrog_9702 | unknown function | unknown function | 1 | 27626 | 27826 |
| YP_009098746.1 | NC_025421_p37 | antirepressor | phrog_2899 | anti-repressor Ant | transcription regulation | 1 | 24586 | 24933 |
| YP_009098756.1 | NC_025421_p47 | holin | phrog_1299 | holin | lysis | 1 | 27934 | 28248 |
| YP_009098725.1 | NC_025421_p16 | hypothetical protein | phrog_1084 | unknown function | unknown function | 1 | 11710 | 12048 |
| YP_009098753.1 | NC_025421_p44 | hypothetical protein | phrog_15092 | unknown function | unknown function | 1 | 26796 | 27224 |
| YP_009098749.1 | NC_025421_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25670 | 25981 |
| YP_009098747.1 | NC_025421_p38 | antirepressor | phrog_9438 | anti-repressor | transcription regulation | 1 | 24930 | 25271 |
| YP_009098750.1 | NC_025421_p41 | hypothetical protein | phrog_13668 | unknown function | unknown function | 1 | 26036 | 26254 |
| YP_009098714.1 | NC_025421_p5 | ClpP protease | phrog_80 | head maturation protease | head and packaging | 1 | 3476 | 4081 |
| YP_009098745.1 | NC_025421_p36 | DnaC | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 23698 | 24513 |
| YP_009098743.1 | NC_025421_p34 | DNA replication protein | phrog_151 | transposase | integration and excision | 1 | 22580 | 22870 |
| YP_009098727.1 | NC_025421_p18 | antireceptor | phrog_1067 | minor head protein | head and packaging | 1 | 14718 | 16640 |
| YP_009098748.1 | NC_025421_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25458 | 25604 |
| YP_009098728.1 | NC_025421_p19 | hypothetical protein | phrog_13632 | unknown function | unknown function | 1 | 16653 | 17012 |
| YP_009098716.1 | NC_025421_p7 | hypothetical protein | phrog_6865 | unknown function | unknown function | 1 | 5289 | 5456 |
| YP_009098726.1 | NC_025421_p17 | glycerophosphoryl diester phosphodiesterase | phrog_13515 | phosphodiesterase | other | 1 | 12062 | 14698 |
| YP_009098754.1 | NC_025421_p45 | hypothetical protein | phrog_14005 | unknown function | unknown function | 1 | 27230 | 27391 |
| YP_009098732.1 | NC_025421_p23 | hypothetical protein | phrog_11717 | unknown function | unknown function | 1 | 17938 | 18396 |
| YP_009098741.1 | NC_025421_p32 | hypothetical protein | phrog_13519 | unknown function | unknown function | 1 | 22011 | 22163 |
| YP_009098729.1 | NC_025421_p20 | Cro-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 17403 | 17606 |
| YP_009098715.1 | NC_025421_p6 | major head protein | phrog_10 | major head protein | head and packaging | 1 | 4084 | 5271 |
| YP_009098735.1 | NC_025421_p26 | hypothetical protein | phrog_298 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 18980 | 19585 |
| YP_009098711.1 | NC_025421_p2 | hypothetical protein | phrog_13845 | unknown function | unknown function | 1 | 221 | 586 |
| YP_009098721.1 | NC_025421_p12 | major tail protein | phrog_88 | major tail protein | tail | 1 | 6904 | 7476 |
| YP_009098720.1 | NC_025421_p11 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 6548 | 6889 |
| YP_009098742.1 | NC_025421_p33 | hypothetical protein | phrog_11233 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 22235 | 22555 |
| YP_009098724.1 | NC_025421_p15 | tail component | phrog_33 | distal tail protein Dit | tail | 1 | 11009 | 11713 |
| YP_009098731.1 | NC_025421_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17772 | 17918 |
| YP_009098736.1 | NC_025421_p27 | single-stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 19575 | 20036 |
| YP_009098722.1 | NC_025421_p13 | hypothetical protein | phrog_2115 | tail protein | tail | 1 | 7496 | 7846 |
| YP_009098738.1 | NC_025421_p29 | hypothetical protein | phrog_7566 | unknown function | unknown function | 1 | 20567 | 20854 |
| YP_009098758.1 | NC_025421_p49 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 29141 | 29521 |
| YP_009098734.1 | NC_025421_p25 | hypothetical protein | phrog_6244 | unknown function | unknown function | 1 | 18661 | 18978 |
| YP_009098739.1 | NC_025421_p30 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 20847 | 21338 |
| YP_009098744.1 | NC_025421_p35 | DNA replication protein | phrog_678 | replication initiation O-like | DNA, RNA and nucleotide metabolism | 1 | 22884 | 23729 |
| YP_009098710.1 | NC_025421_p1 | ParB nuclease | singleton | unknown function | unknown function | 1 | 90 | 191 |
| YP_009098712.1 | NC_025421_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 576 | 2255 |