| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_025427 |
Definition |
Rhizobium phage vB_RleM_PPF1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae. |
DB of origin |
REFSEQ |
Length |
54506 |
Host Name |
Rhizobium leguminosarum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
61.89 |
Number of singletons |
41 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009099582.1 | NC_025427_p19 | tail protein GpP | phrog_177 | baseplate hub | tail | 1 | 14480 | 15526 |
| YP_009099648.1 | NC_025427_p85 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47735 | 47932 |
| YP_009099569.1 | NC_025427_p6 | lytic murein transglycosylase | singleton | unknown function | unknown function | 1 | 5523 | 6068 |
| YP_009099567.1 | NC_025427_p4 | hypothetical protein | phrog_17985 | unknown function | unknown function | 1 | 4312 | 4584 |
| YP_009099579.1 | NC_025427_p16 | tail tape measure protein | phrog_34270 | tail length tape measure protein | tail | 1 | 11557 | 13377 |
| YP_009099595.1 | NC_025427_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23545 | 24651 |
| YP_009099641.1 | NC_025427_p78 | hypothetical protein | phrog_101 | CII-like transcriptional activator | transcription regulation | 1 | 44020 | 44508 |
| YP_009099630.1 | NC_025427_p67 | hypothetical protein | phrog_37085 | unknown function | unknown function | -1 | 39742 | 40356 |
| YP_009099631.1 | NC_025427_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40349 | 40618 |
| YP_009099586.1 | NC_025427_p23 | baseplate J-like protein | phrog_6 | baseplate wedge subunit | tail | 1 | 16776 | 17858 |
| YP_009099612.1 | NC_025427_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31898 | 32140 |
| YP_009099593.1 | NC_025427_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22184 | 22579 |
| YP_009099613.1 | NC_025427_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32142 | 32417 |
| YP_009099634.1 | NC_025427_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41226 | 41423 |
| YP_009099609.1 | NC_025427_p46 | hypothetical protein | phrog_10379 | unknown function | unknown function | -1 | 30557 | 31072 |
| YP_009099590.1 | NC_025427_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20244 | 21008 |
| YP_009099604.1 | NC_025427_p41 | hypothetical protein | phrog_12188 | unknown function | unknown function | -1 | 27348 | 27641 |
| YP_009099576.1 | NC_025427_p13 | tail sheath protein | phrog_165 | tail sheath | tail | 1 | 9244 | 10734 |
| YP_009099621.1 | NC_025427_p58 | hypothetical protein | phrog_3193 | unknown function | unknown function | -1 | 34791 | 35282 |
| YP_009099624.1 | NC_025427_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36117 | 36587 |
| YP_009099611.1 | NC_025427_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31368 | 31901 |
| YP_009099578.1 | NC_025427_p15 | hypothetical protein | phrog_24302 | unknown function | unknown function | 1 | 11133 | 11453 |
| YP_009099638.1 | NC_025427_p75 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42788 | 43123 |
| YP_009099572.1 | NC_025427_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7666 | 7941 |
| YP_009099636.1 | NC_025427_p73 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41742 | 42119 |
| YP_009099603.1 | NC_025427_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27257 | 27373 |
| YP_009099627.1 | NC_025427_p64 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38299 | 38907 |
| YP_009099650.1 | NC_025427_p87 | C-5 cytosine-specific DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 48222 | 50357 |
| YP_009099639.1 | NC_025427_p76 | transcriptional regulator with HTH domain | phrog_8 | transcriptional regulator | transcription regulation | -1 | 43120 | 43464 |
| YP_009099632.1 | NC_025427_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40608 | 40958 |
| YP_009099656.1 | NC_025427_p93 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53793 | 53921 |
| YP_009099626.1 | NC_025427_p63 | hypothetical protein | phrog_4856 | nucleoside triphosphate pyrophosphohydrolase | other | -1 | 37773 | 38297 |
| YP_009099599.1 | NC_025427_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25883 | 26137 |
| YP_009099643.1 | NC_025427_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44847 | 45320 |
| YP_009099618.1 | NC_025427_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34140 | 34388 |
| YP_009099583.1 | NC_025427_p20 | baseplate assembly protein V | phrog_11 | baseplate spike | tail | 1 | 15523 | 15984 |
| YP_009099642.1 | NC_025427_p79 | hypothetical protein | phrog_25306 | unknown function | unknown function | 1 | 44508 | 44774 |
| YP_009099598.1 | NC_025427_p35 | hypothetical protein | phrog_10152 | Rz-like spanin | lysis | 1 | 25567 | 25926 |
| YP_009099616.1 | NC_025427_p53 | PRK12775-containing protein | phrog_26142 | unknown function | unknown function | -1 | 33701 | 33916 |
| YP_009099606.1 | NC_025427_p43 | site-specific integrase/recombinase | phrog_1 | integrase | integration and excision | -1 | 29009 | 30124 |
| YP_009099600.1 | NC_025427_p37 | hypothetical protein | phrog_2429 | involved in bacteriocin production or immunity | moron, auxiliary metabolic gene and host takeover | 1 | 26168 | 26434 |
| YP_009099587.1 | NC_025427_p24 | hypothetical protein | phrog_203 | baseplate wedge subunit | tail | 1 | 17848 | 18633 |
| YP_009099573.1 | NC_025427_p10 | hypothetical protein | phrog_29778 | unknown function | unknown function | 1 | 7944 | 8342 |
| YP_009099629.1 | NC_025427_p66 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39606 | 39752 |
| YP_009099589.1 | NC_025427_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19546 | 20247 |
| YP_009099608.1 | NC_025427_p45 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30324 | 30560 |
| YP_009099610.1 | NC_025427_p47 | hypothetical protein | phrog_15035 | unknown function | unknown function | -1 | 31072 | 31371 |
| YP_009099596.1 | NC_025427_p33 | N-acetylmuramoyl-L-alanine amidase | phrog_5867 | endolysin | lysis | 1 | 24720 | 25244 |
| YP_009099564.1 | NC_025427_p1 | hypothetical protein | phrog_57 | terminase small subunit | head and packaging | 1 | 121 | 705 |
| YP_009099585.1 | NC_025427_p22 | hypothetical protein | phrog_180 | baseplate wedge subunit | tail | 1 | 16268 | 16804 |
| YP_009099591.1 | NC_025427_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21008 | 21859 |
| YP_009099592.1 | NC_025427_p29 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21856 | 22113 |
| YP_009099607.1 | NC_025427_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30182 | 30295 |
| YP_009099568.1 | NC_025427_p5 | periplasmic serine protease | phrog_53 | head maturation protease | head and packaging | 1 | 4559 | 5518 |
| YP_009099633.1 | NC_025427_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40960 | 41229 |
| YP_009099620.1 | NC_025427_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34597 | 34794 |
| YP_009099640.1 | NC_025427_p77 | HTH family protein | singleton | transcriptional repressor | transcription regulation | 1 | 43560 | 43787 |
| YP_009099580.1 | NC_025427_p17 | tail/DNA circulation protein | phrog_16855 | Gpu-like tail protein | tail | 1 | 13379 | 13837 |
| YP_009099635.1 | NC_025427_p72 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41410 | 41745 |
| YP_009099602.1 | NC_025427_p39 | hypothetical protein | phrog_36610 | unknown function | unknown function | 1 | 26613 | 27095 |
| YP_009099647.1 | NC_025427_p84 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47463 | 47738 |
| YP_009099601.1 | NC_025427_p38 | hypothetical protein | phrog_30642 | unknown function | unknown function | 1 | 26431 | 26616 |
| YP_009099645.1 | NC_025427_p82 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 46857 | 47186 |
| YP_009099614.1 | NC_025427_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32407 | 33156 |
| YP_009099577.1 | NC_025427_p14 | tail tube protein | phrog_185 | tail tube protein | tail | 1 | 10762 | 11133 |
| YP_009099628.1 | NC_025427_p65 | hypothetical protein | phrog_2600 | unknown function | unknown function | -1 | 38907 | 39602 |
| YP_009099584.1 | NC_025427_p21 | hypothetical protein | phrog_6978 | unknown function | unknown function | 1 | 16028 | 16264 |
| YP_009099581.1 | NC_025427_p18 | hypothetical protein | phrog_32470 | unknown function | unknown function | 1 | 13848 | 14471 |
| YP_009099617.1 | NC_025427_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33913 | 34140 |
| YP_009099649.1 | NC_025427_p86 | hypothetical protein | phrog_16358 | unknown function | unknown function | 1 | 47929 | 48225 |
| YP_009099597.1 | NC_025427_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25244 | 25570 |
| YP_009099575.1 | NC_025427_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9040 | 9243 |
| YP_009099574.1 | NC_025427_p11 | hypothetical protein | phrog_12983 | unknown function | unknown function | 1 | 8329 | 9012 |
| YP_009099588.1 | NC_025427_p25 | hypothetical protein | phrog_17588 | unknown function | unknown function | 1 | 18652 | 19536 |
| YP_009099651.1 | NC_025427_p88 | adenine-specific methyltransferase | phrog_56 | DNA methyltransferase | other | 1 | 50377 | 51279 |
| YP_009099644.1 | NC_025427_p81 | hypothetical protein | phrog_799 | DNA methyltransferase | other | 1 | 45292 | 46860 |
| YP_009099646.1 | NC_025427_p83 | hypothetical protein | phrog_26786 | unknown function | unknown function | 1 | 47183 | 47473 |
| YP_009099605.1 | NC_025427_p42 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 27700 | 28746 |
| YP_009099571.1 | NC_025427_p8 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 6534 | 7598 |
| YP_009099637.1 | NC_025427_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42387 | 42578 |
| YP_009099594.1 | NC_025427_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22581 | 23432 |
| YP_009099566.1 | NC_025427_p3 | portal protein | phrog_21 | portal protein | head and packaging | 1 | 2678 | 4312 |
| YP_009099655.1 | NC_025427_p92 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53644 | 53796 |
| YP_009099652.1 | NC_025427_p89 | hypothetical protein | phrog_27894 | unknown function | unknown function | 1 | 51276 | 51536 |
| YP_009099625.1 | NC_025427_p62 | hypothetical protein | phrog_2045 | unknown function | unknown function | -1 | 36584 | 37780 |
| YP_009099565.1 | NC_025427_p2 | terminase large subunit | phrog_15 | terminase large subunit | head and packaging | 1 | 702 | 2693 |
| YP_009099619.1 | NC_025427_p56 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34385 | 34603 |
| YP_009099615.1 | NC_025427_p52 | hypothetical protein | phrog_3230 | unknown function | unknown function | -1 | 33153 | 33704 |
| YP_009099654.1 | NC_025427_p91 | transcription antitermination protein NusG | phrog_6386 | transcription antiterminator | transcription regulation | 1 | 52930 | 53589 |
| YP_009099657.1 | NC_025427_p94 | minor tail protein | phrog_27 | tail completion or Neck1 protein | connector | 1 | 53880 | 54416 |
| YP_009099570.1 | NC_025427_p7 | head decorative protein | phrog_49 | head decoration | head and packaging | 1 | 6099 | 6500 |
| YP_009099623.1 | NC_025427_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35710 | 36120 |
| YP_009099653.1 | NC_025427_p90 | transcriptional regulator with a HTH domain | phrog_270 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 51603 | 52943 |
| YP_009099622.1 | NC_025427_p59 | hypothetical protein | phrog_464 | unknown function | unknown function | -1 | 35279 | 35713 |