Genomic map of Rhizobium phage vB_RleM_PPF1 (NC_025427)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_025427
Definition
Rhizobium phage vB_RleM_PPF1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
54506
Host Name
Rhizobium leguminosarum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
94
%GC
61.89
Number of singletons
41
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009099582.1 NC_025427_p19 tail protein GpP phrog_177 baseplate hub tail 1 14480 15526
YP_009099648.1 NC_025427_p85 hypothetical protein singleton unknown function unknown function 1 47735 47932
YP_009099569.1 NC_025427_p6 lytic murein transglycosylase singleton unknown function unknown function 1 5523 6068
YP_009099567.1 NC_025427_p4 hypothetical protein phrog_17985 unknown function unknown function 1 4312 4584
YP_009099579.1 NC_025427_p16 tail tape measure protein phrog_34270 tail length tape measure protein tail 1 11557 13377
YP_009099595.1 NC_025427_p32 hypothetical protein singleton unknown function unknown function 1 23545 24651
YP_009099641.1 NC_025427_p78 hypothetical protein phrog_101 CII-like transcriptional activator transcription regulation 1 44020 44508
YP_009099630.1 NC_025427_p67 hypothetical protein phrog_37085 unknown function unknown function -1 39742 40356
YP_009099631.1 NC_025427_p68 hypothetical protein singleton unknown function unknown function -1 40349 40618
YP_009099586.1 NC_025427_p23 baseplate J-like protein phrog_6 baseplate wedge subunit tail 1 16776 17858
YP_009099612.1 NC_025427_p49 hypothetical protein singleton unknown function unknown function -1 31898 32140
YP_009099593.1 NC_025427_p30 hypothetical protein singleton unknown function unknown function 1 22184 22579
YP_009099613.1 NC_025427_p50 hypothetical protein singleton unknown function unknown function -1 32142 32417
YP_009099634.1 NC_025427_p71 hypothetical protein singleton unknown function unknown function -1 41226 41423
YP_009099609.1 NC_025427_p46 hypothetical protein phrog_10379 unknown function unknown function -1 30557 31072
YP_009099590.1 NC_025427_p27 hypothetical protein singleton unknown function unknown function 1 20244 21008
YP_009099604.1 NC_025427_p41 hypothetical protein phrog_12188 unknown function unknown function -1 27348 27641
YP_009099576.1 NC_025427_p13 tail sheath protein phrog_165 tail sheath tail 1 9244 10734
YP_009099621.1 NC_025427_p58 hypothetical protein phrog_3193 unknown function unknown function -1 34791 35282
YP_009099624.1 NC_025427_p61 hypothetical protein singleton unknown function unknown function -1 36117 36587
YP_009099611.1 NC_025427_p48 hypothetical protein singleton unknown function unknown function -1 31368 31901
YP_009099578.1 NC_025427_p15 hypothetical protein phrog_24302 unknown function unknown function 1 11133 11453
YP_009099638.1 NC_025427_p75 hypothetical protein singleton unknown function unknown function 1 42788 43123
YP_009099572.1 NC_025427_p9 hypothetical protein singleton unknown function unknown function 1 7666 7941
YP_009099636.1 NC_025427_p73 hypothetical protein singleton unknown function unknown function 1 41742 42119
YP_009099603.1 NC_025427_p40 hypothetical protein singleton unknown function unknown function -1 27257 27373
YP_009099627.1 NC_025427_p64 hypothetical protein singleton unknown function unknown function -1 38299 38907
YP_009099650.1 NC_025427_p87 C-5 cytosine-specific DNA methylase phrog_116 DNA methyltransferase other 1 48222 50357
YP_009099639.1 NC_025427_p76 transcriptional regulator with HTH domain phrog_8 transcriptional regulator transcription regulation -1 43120 43464
YP_009099632.1 NC_025427_p69 hypothetical protein singleton unknown function unknown function -1 40608 40958
YP_009099656.1 NC_025427_p93 hypothetical protein singleton unknown function unknown function -1 53793 53921
YP_009099626.1 NC_025427_p63 hypothetical protein phrog_4856 nucleoside triphosphate pyrophosphohydrolase other -1 37773 38297
YP_009099599.1 NC_025427_p36 hypothetical protein singleton unknown function unknown function 1 25883 26137
YP_009099643.1 NC_025427_p80 hypothetical protein singleton unknown function unknown function 1 44847 45320
YP_009099618.1 NC_025427_p55 hypothetical protein singleton unknown function unknown function -1 34140 34388
YP_009099583.1 NC_025427_p20 baseplate assembly protein V phrog_11 baseplate spike tail 1 15523 15984
YP_009099642.1 NC_025427_p79 hypothetical protein phrog_25306 unknown function unknown function 1 44508 44774
YP_009099598.1 NC_025427_p35 hypothetical protein phrog_10152 Rz-like spanin lysis 1 25567 25926
YP_009099616.1 NC_025427_p53 PRK12775-containing protein phrog_26142 unknown function unknown function -1 33701 33916
YP_009099606.1 NC_025427_p43 site-specific integrase/recombinase phrog_1 integrase integration and excision -1 29009 30124
YP_009099600.1 NC_025427_p37 hypothetical protein phrog_2429 involved in bacteriocin production or immunity moron, auxiliary metabolic gene and host takeover 1 26168 26434
YP_009099587.1 NC_025427_p24 hypothetical protein phrog_203 baseplate wedge subunit tail 1 17848 18633
YP_009099573.1 NC_025427_p10 hypothetical protein phrog_29778 unknown function unknown function 1 7944 8342
YP_009099629.1 NC_025427_p66 hypothetical protein singleton unknown function unknown function -1 39606 39752
YP_009099589.1 NC_025427_p26 hypothetical protein singleton unknown function unknown function 1 19546 20247
YP_009099608.1 NC_025427_p45 hypothetical protein singleton unknown function unknown function -1 30324 30560
YP_009099610.1 NC_025427_p47 hypothetical protein phrog_15035 unknown function unknown function -1 31072 31371
YP_009099596.1 NC_025427_p33 N-acetylmuramoyl-L-alanine amidase phrog_5867 endolysin lysis 1 24720 25244
YP_009099564.1 NC_025427_p1 hypothetical protein phrog_57 terminase small subunit head and packaging 1 121 705
YP_009099585.1 NC_025427_p22 hypothetical protein phrog_180 baseplate wedge subunit tail 1 16268 16804
YP_009099591.1 NC_025427_p28 hypothetical protein singleton unknown function unknown function 1 21008 21859
YP_009099592.1 NC_025427_p29 hypothetical protein singleton unknown function unknown function -1 21856 22113
YP_009099607.1 NC_025427_p44 hypothetical protein singleton unknown function unknown function 1 30182 30295
YP_009099568.1 NC_025427_p5 periplasmic serine protease phrog_53 head maturation protease head and packaging 1 4559 5518
YP_009099633.1 NC_025427_p70 hypothetical protein singleton unknown function unknown function -1 40960 41229
YP_009099620.1 NC_025427_p57 hypothetical protein singleton unknown function unknown function -1 34597 34794
YP_009099640.1 NC_025427_p77 HTH family protein singleton transcriptional repressor transcription regulation 1 43560 43787
YP_009099580.1 NC_025427_p17 tail/DNA circulation protein phrog_16855 Gpu-like tail protein tail 1 13379 13837
YP_009099635.1 NC_025427_p72 hypothetical protein singleton unknown function unknown function 1 41410 41745
YP_009099602.1 NC_025427_p39 hypothetical protein phrog_36610 unknown function unknown function 1 26613 27095
YP_009099647.1 NC_025427_p84 hypothetical protein singleton unknown function unknown function 1 47463 47738
YP_009099601.1 NC_025427_p38 hypothetical protein phrog_30642 unknown function unknown function 1 26431 26616
YP_009099645.1 NC_025427_p82 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 46857 47186
YP_009099614.1 NC_025427_p51 hypothetical protein singleton unknown function unknown function -1 32407 33156
YP_009099577.1 NC_025427_p14 tail tube protein phrog_185 tail tube protein tail 1 10762 11133
YP_009099628.1 NC_025427_p65 hypothetical protein phrog_2600 unknown function unknown function -1 38907 39602
YP_009099584.1 NC_025427_p21 hypothetical protein phrog_6978 unknown function unknown function 1 16028 16264
YP_009099581.1 NC_025427_p18 hypothetical protein phrog_32470 unknown function unknown function 1 13848 14471
YP_009099617.1 NC_025427_p54 hypothetical protein singleton unknown function unknown function -1 33913 34140
YP_009099649.1 NC_025427_p86 hypothetical protein phrog_16358 unknown function unknown function 1 47929 48225
YP_009099597.1 NC_025427_p34 hypothetical protein singleton unknown function unknown function 1 25244 25570
YP_009099575.1 NC_025427_p12 hypothetical protein singleton unknown function unknown function 1 9040 9243
YP_009099574.1 NC_025427_p11 hypothetical protein phrog_12983 unknown function unknown function 1 8329 9012
YP_009099588.1 NC_025427_p25 hypothetical protein phrog_17588 unknown function unknown function 1 18652 19536
YP_009099651.1 NC_025427_p88 adenine-specific methyltransferase phrog_56 DNA methyltransferase other 1 50377 51279
YP_009099644.1 NC_025427_p81 hypothetical protein phrog_799 DNA methyltransferase other 1 45292 46860
YP_009099646.1 NC_025427_p83 hypothetical protein phrog_26786 unknown function unknown function 1 47183 47473
YP_009099605.1 NC_025427_p42 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 27700 28746
YP_009099571.1 NC_025427_p8 major capsid protein phrog_29 major head protein head and packaging 1 6534 7598
YP_009099637.1 NC_025427_p74 hypothetical protein singleton unknown function unknown function -1 42387 42578
YP_009099594.1 NC_025427_p31 hypothetical protein singleton unknown function unknown function 1 22581 23432
YP_009099566.1 NC_025427_p3 portal protein phrog_21 portal protein head and packaging 1 2678 4312
YP_009099655.1 NC_025427_p92 hypothetical protein singleton unknown function unknown function 1 53644 53796
YP_009099652.1 NC_025427_p89 hypothetical protein phrog_27894 unknown function unknown function 1 51276 51536
YP_009099625.1 NC_025427_p62 hypothetical protein phrog_2045 unknown function unknown function -1 36584 37780
YP_009099565.1 NC_025427_p2 terminase large subunit phrog_15 terminase large subunit head and packaging 1 702 2693
YP_009099619.1 NC_025427_p56 hypothetical protein singleton unknown function unknown function -1 34385 34603
YP_009099615.1 NC_025427_p52 hypothetical protein phrog_3230 unknown function unknown function -1 33153 33704
YP_009099654.1 NC_025427_p91 transcription antitermination protein NusG phrog_6386 transcription antiterminator transcription regulation 1 52930 53589
YP_009099657.1 NC_025427_p94 minor tail protein phrog_27 tail completion or Neck1 protein connector 1 53880 54416
YP_009099570.1 NC_025427_p7 head decorative protein phrog_49 head decoration head and packaging 1 6099 6500
YP_009099623.1 NC_025427_p60 hypothetical protein singleton unknown function unknown function -1 35710 36120
YP_009099653.1 NC_025427_p90 transcriptional regulator with a HTH domain phrog_270 replication initiation protein DNA, RNA and nucleotide metabolism 1 51603 52943
YP_009099622.1 NC_025427_p59 hypothetical protein phrog_464 unknown function unknown function -1 35279 35713