| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_025428 |
Definition |
Ruegeria phage DSS3-P1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
59601 |
Host Name |
Ruegeria pomeroyi |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
82 |
%GC |
64.13 |
Number of singletons |
40 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009099690.1 | NC_025428_p33 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 12733 | 14007 |
| YP_009099675.1 | NC_025428_p18 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7321 | 7593 |
| YP_009099686.1 | NC_025428_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11410 | 11763 |
| YP_009099666.1 | NC_025428_p9 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2858 | 3607 |
| YP_009099676.1 | NC_025428_p19 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7692 | 7799 |
| YP_009099704.1 | NC_025428_p47 | hypothetical protein | phrog_1082 | tail assembly protein | tail | -1 | 24358 | 26070 |
| YP_009099680.1 | NC_025428_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9081 | 9590 |
| YP_009099688.1 | NC_025428_p31 | hypothetical protein | phrog_25396 | unknown function | unknown function | 1 | 12108 | 12446 |
| YP_009099669.1 | NC_025428_p12 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4640 | 5389 |
| YP_009099697.1 | NC_025428_p40 | glycoside hydrolase family 19 chitinase domain | phrog_181 | endolysin | lysis | -1 | 17642 | 18526 |
| YP_009099721.1 | NC_025428_p64 | integrase | phrog_1 | integrase | integration and excision | -1 | 42761 | 43996 |
| YP_009099739.1 | NC_025428_p82 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58389 | 58757 |
| YP_009099700.1 | NC_025428_p43 | tail protein | phrog_1101 | tail protein | tail | -1 | 20161 | 23046 |
| YP_009099703.1 | NC_025428_p46 | hypothetical protein | phrog_778 | tail assembly protein | tail | -1 | 23491 | 24348 |
| YP_009099714.1 | NC_025428_p57 | head decoration protein | phrog_49 | head decoration | head and packaging | -1 | 35796 | 36218 |
| YP_009099727.1 | NC_025428_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47293 | 47559 |
| YP_009099698.1 | NC_025428_p41 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18605 | 19315 |
| YP_009099702.1 | NC_025428_p45 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | -1 | 23239 | 23481 |
| YP_009099672.1 | NC_025428_p15 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6640 | 6825 |
| YP_009099682.1 | NC_025428_p25 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9724 | 9999 |
| YP_009099678.1 | NC_025428_p21 | hypothetical protein | phrog_14076 | transcriptional regulator | transcription regulation | -1 | 8579 | 8839 |
| YP_009099722.1 | NC_025428_p65 | HTH-domain containing protein | phrog_2967 | transcriptional regulator | transcription regulation | -1 | 44340 | 45038 |
| YP_009099662.1 | NC_025428_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1275 | 1904 |
| YP_009099671.1 | NC_025428_p14 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6413 | 6643 |
| YP_009099730.1 | NC_025428_p73 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 48180 | 50426 |
| YP_009099685.1 | NC_025428_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11132 | 11413 |
| YP_009099693.1 | NC_025428_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15650 | 16348 |
| YP_009099725.1 | NC_025428_p68 | VRR-NUC domain containing protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 46893 | 47189 |
| YP_009099701.1 | NC_025428_p44 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | -1 | 23033 | 23242 |
| YP_009099708.1 | NC_025428_p51 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | -1 | 32017 | 32784 |
| YP_009099709.1 | NC_025428_p52 | hypothetical protein | phrog_5078 | tail terminator | connector | -1 | 32836 | 33330 |
| YP_009099663.1 | NC_025428_p6 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1901 | 2200 |
| YP_009099710.1 | NC_025428_p53 | hypothetical protein | phrog_27 | tail completion or Neck1 protein | connector | -1 | 33330 | 33950 |
| YP_009099705.1 | NC_025428_p48 | tail tape measure protein | phrog_2335 | tail length tape measure protein | tail | -1 | 26067 | 31301 |
| YP_009099699.1 | NC_025428_p42 | hypothetical protein | phrog_21978 | unknown function | unknown function | -1 | 19312 | 20106 |
| YP_009099665.1 | NC_025428_p8 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2580 | 2858 |
| YP_009099673.1 | NC_025428_p16 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6844 | 7062 |
| YP_009099674.1 | NC_025428_p17 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7064 | 7324 |
| YP_009099719.1 | NC_025428_p62 | terminase small subunit | phrog_141 | terminase small subunit | head and packaging | -1 | 41466 | 42134 |
| YP_009099692.1 | NC_025428_p35 | metal dependent phosphohydrolase | phrog_318 | deoxyribonucleoside 5' monophosphate phosphatase | other | 1 | 15014 | 15523 |
| YP_009099695.1 | NC_025428_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17009 | 17422 |
| YP_009099689.1 | NC_025428_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12443 | 12670 |
| YP_009099691.1 | NC_025428_p34 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 14138 | 14941 |
| YP_009099731.1 | NC_025428_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50423 | 50629 |
| YP_009099720.1 | NC_025428_p63 | transcriptional regulator | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 42127 | 42312 |
| YP_009099659.1 | NC_025428_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 694 | 861 |
| YP_009099713.1 | NC_025428_p56 | major capsid protein | phrog_29 | major head protein | head and packaging | -1 | 34681 | 35739 |
| YP_009099667.1 | NC_025428_p10 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3637 | 4041 |
| YP_009099677.1 | NC_025428_p20 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7856 | 8377 |
| YP_009099715.1 | NC_025428_p58 | signal peptide peptidase A | phrog_53 | head maturation protease | head and packaging | -1 | 36242 | 37525 |
| YP_009099660.1 | NC_025428_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 858 | 1115 |
| YP_009099658.1 | NC_025428_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 428 | 697 |
| YP_009099707.1 | NC_025428_p50 | tail protein | phrog_5260 | tail protein | tail | -1 | 31539 | 31961 |
| YP_009099724.1 | NC_025428_p67 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46759 | 46896 |
| YP_009099712.1 | NC_025428_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34326 | 34613 |
| YP_009099726.1 | NC_025428_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47201 | 47296 |
| YP_009099711.1 | NC_025428_p54 | hypothetical protein | phrog_4858 | unknown function | unknown function | -1 | 33952 | 34326 |
| YP_009099664.1 | NC_025428_p7 | hypothetical protein | phrog_9027 | unknown function | unknown function | -1 | 2197 | 2394 |
| YP_009099733.1 | NC_025428_p76 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 51533 | 52225 |
| YP_009099738.1 | NC_025428_p81 | virulence-associated protein | phrog_256 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 55570 | 58374 |
| YP_009099670.1 | NC_025428_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 5824 | 6060 |
| YP_009099679.1 | NC_025428_p22 | HTH-domain containing protein | phrog_14076 | transcriptional regulator | transcription regulation | -1 | 8836 | 9084 |
| YP_009099681.1 | NC_025428_p24 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9587 | 9724 |
| YP_009099729.1 | NC_025428_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47750 | 48163 |
| YP_009099684.1 | NC_025428_p27 | hypothetical protein | phrog_4212 | unknown function | unknown function | 1 | 10666 | 10962 |
| YP_009099737.1 | NC_025428_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55315 | 55521 |
| YP_009099694.1 | NC_025428_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16332 | 17012 |
| YP_009099728.1 | NC_025428_p71 | hypothetical protein | phrog_4767 | unknown function | unknown function | -1 | 47556 | 47750 |
| YP_009099734.1 | NC_025428_p77 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 52209 | 53402 |
| YP_009099716.1 | NC_025428_p59 | portal protein | phrog_21 | portal protein | head and packaging | -1 | 37518 | 39176 |
| YP_009099735.1 | NC_025428_p78 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53406 | 54347 |
| YP_009099668.1 | NC_025428_p11 | hypothetical protein | phrog_10759 | unknown function | unknown function | -1 | 4071 | 4610 |
| YP_009099736.1 | NC_025428_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54473 | 55021 |
| YP_009099661.1 | NC_025428_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1105 | 1278 |
| YP_009099683.1 | NC_025428_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10221 | 10574 |
| YP_009099706.1 | NC_025428_p49 | tail protein | phrog_9221 | tail length tape measure protein | tail | -1 | 31303 | 31512 |
| YP_009099696.1 | NC_025428_p39 | hypothetical protein | phrog_34283 | unknown function | unknown function | -1 | 17422 | 17640 |
| YP_009099723.1 | NC_025428_p66 | superfamily II DNA/RNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 45312 | 46757 |
| YP_009099717.1 | NC_025428_p60 | head-to-tail joining protein | phrog_75 | head-tail adaptor Ad1 | connector | -1 | 39176 | 39379 |
| YP_009099732.1 | NC_025428_p75 | hypothetical protein | phrog_757 | DNA methyltransferase | other | -1 | 50626 | 51402 |
| YP_009099687.1 | NC_025428_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11729 | 12091 |
| YP_009099718.1 | NC_025428_p61 | terminase large subunit | phrog_15 | terminase large subunit | head and packaging | -1 | 39389 | 41473 |