Genomic map of Ruegeria phage DSS3-P1 (NC_025428)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_025428
Definition
Ruegeria phage DSS3-P1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
59601
Host Name
Ruegeria pomeroyi
Host domain
Bacteria
Is prophage?
undef
Number of proteins
82
%GC
64.13
Number of singletons
40
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009099690.1 NC_025428_p33 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 12733 14007
YP_009099675.1 NC_025428_p18 hypothetical protein singleton unknown function unknown function -1 7321 7593
YP_009099686.1 NC_025428_p29 hypothetical protein singleton unknown function unknown function 1 11410 11763
YP_009099666.1 NC_025428_p9 hypothetical protein singleton unknown function unknown function -1 2858 3607
YP_009099676.1 NC_025428_p19 hypothetical protein singleton unknown function unknown function -1 7692 7799
YP_009099704.1 NC_025428_p47 hypothetical protein phrog_1082 tail assembly protein tail -1 24358 26070
YP_009099680.1 NC_025428_p23 hypothetical protein singleton unknown function unknown function -1 9081 9590
YP_009099688.1 NC_025428_p31 hypothetical protein phrog_25396 unknown function unknown function 1 12108 12446
YP_009099669.1 NC_025428_p12 hypothetical protein singleton unknown function unknown function -1 4640 5389
YP_009099697.1 NC_025428_p40 glycoside hydrolase family 19 chitinase domain phrog_181 endolysin lysis -1 17642 18526
YP_009099721.1 NC_025428_p64 integrase phrog_1 integrase integration and excision -1 42761 43996
YP_009099739.1 NC_025428_p82 hypothetical protein singleton unknown function unknown function 1 58389 58757
YP_009099700.1 NC_025428_p43 tail protein phrog_1101 tail protein tail -1 20161 23046
YP_009099703.1 NC_025428_p46 hypothetical protein phrog_778 tail assembly protein tail -1 23491 24348
YP_009099714.1 NC_025428_p57 head decoration protein phrog_49 head decoration head and packaging -1 35796 36218
YP_009099727.1 NC_025428_p70 hypothetical protein singleton unknown function unknown function -1 47293 47559
YP_009099698.1 NC_025428_p41 hypothetical protein singleton unknown function unknown function -1 18605 19315
YP_009099702.1 NC_025428_p45 hypothetical protein phrog_1180 tail assembly chaperone tail -1 23239 23481
YP_009099672.1 NC_025428_p15 hypothetical protein singleton unknown function unknown function -1 6640 6825
YP_009099682.1 NC_025428_p25 hypothetical protein singleton unknown function unknown function -1 9724 9999
YP_009099678.1 NC_025428_p21 hypothetical protein phrog_14076 transcriptional regulator transcription regulation -1 8579 8839
YP_009099722.1 NC_025428_p65 HTH-domain containing protein phrog_2967 transcriptional regulator transcription regulation -1 44340 45038
YP_009099662.1 NC_025428_p5 hypothetical protein singleton unknown function unknown function -1 1275 1904
YP_009099671.1 NC_025428_p14 hypothetical protein singleton unknown function unknown function -1 6413 6643
YP_009099730.1 NC_025428_p73 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 48180 50426
YP_009099685.1 NC_025428_p28 hypothetical protein singleton unknown function unknown function 1 11132 11413
YP_009099693.1 NC_025428_p36 hypothetical protein singleton unknown function unknown function 1 15650 16348
YP_009099725.1 NC_025428_p68 VRR-NUC domain containing protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 46893 47189
YP_009099701.1 NC_025428_p44 hypothetical protein phrog_1196 tail assembly chaperone tail -1 23033 23242
YP_009099708.1 NC_025428_p51 hypothetical protein phrog_807 major tail protein with Ig-like domain tail -1 32017 32784
YP_009099709.1 NC_025428_p52 hypothetical protein phrog_5078 tail terminator connector -1 32836 33330
YP_009099663.1 NC_025428_p6 hypothetical protein singleton unknown function unknown function -1 1901 2200
YP_009099710.1 NC_025428_p53 hypothetical protein phrog_27 tail completion or Neck1 protein connector -1 33330 33950
YP_009099705.1 NC_025428_p48 tail tape measure protein phrog_2335 tail length tape measure protein tail -1 26067 31301
YP_009099699.1 NC_025428_p42 hypothetical protein phrog_21978 unknown function unknown function -1 19312 20106
YP_009099665.1 NC_025428_p8 hypothetical protein singleton unknown function unknown function -1 2580 2858
YP_009099673.1 NC_025428_p16 hypothetical protein singleton unknown function unknown function -1 6844 7062
YP_009099674.1 NC_025428_p17 hypothetical protein singleton unknown function unknown function -1 7064 7324
YP_009099719.1 NC_025428_p62 terminase small subunit phrog_141 terminase small subunit head and packaging -1 41466 42134
YP_009099692.1 NC_025428_p35 metal dependent phosphohydrolase phrog_318 deoxyribonucleoside 5' monophosphate phosphatase other 1 15014 15523
YP_009099695.1 NC_025428_p38 hypothetical protein singleton unknown function unknown function -1 17009 17422
YP_009099689.1 NC_025428_p32 hypothetical protein singleton unknown function unknown function 1 12443 12670
YP_009099691.1 NC_025428_p34 DNA methylase phrog_67 DNA methyltransferase other 1 14138 14941
YP_009099731.1 NC_025428_p74 hypothetical protein singleton unknown function unknown function -1 50423 50629
YP_009099720.1 NC_025428_p63 transcriptional regulator phrog_66 excisionase and transcriptional regulator integration and excision -1 42127 42312
YP_009099659.1 NC_025428_p2 hypothetical protein singleton unknown function unknown function -1 694 861
YP_009099713.1 NC_025428_p56 major capsid protein phrog_29 major head protein head and packaging -1 34681 35739
YP_009099667.1 NC_025428_p10 hypothetical protein singleton unknown function unknown function -1 3637 4041
YP_009099677.1 NC_025428_p20 hypothetical protein singleton unknown function unknown function -1 7856 8377
YP_009099715.1 NC_025428_p58 signal peptide peptidase A phrog_53 head maturation protease head and packaging -1 36242 37525
YP_009099660.1 NC_025428_p3 hypothetical protein singleton unknown function unknown function -1 858 1115
YP_009099658.1 NC_025428_p1 hypothetical protein singleton unknown function unknown function -1 428 697
YP_009099707.1 NC_025428_p50 tail protein phrog_5260 tail protein tail -1 31539 31961
YP_009099724.1 NC_025428_p67 hypothetical protein singleton unknown function unknown function -1 46759 46896
YP_009099712.1 NC_025428_p55 hypothetical protein singleton unknown function unknown function -1 34326 34613
YP_009099726.1 NC_025428_p69 hypothetical protein singleton unknown function unknown function -1 47201 47296
YP_009099711.1 NC_025428_p54 hypothetical protein phrog_4858 unknown function unknown function -1 33952 34326
YP_009099664.1 NC_025428_p7 hypothetical protein phrog_9027 unknown function unknown function -1 2197 2394
YP_009099733.1 NC_025428_p76 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 51533 52225
YP_009099738.1 NC_025428_p81 virulence-associated protein phrog_256 DNA helicase DNA, RNA and nucleotide metabolism 1 55570 58374
YP_009099670.1 NC_025428_p13 hypothetical protein singleton unknown function unknown function -1 5824 6060
YP_009099679.1 NC_025428_p22 HTH-domain containing protein phrog_14076 transcriptional regulator transcription regulation -1 8836 9084
YP_009099681.1 NC_025428_p24 hypothetical protein singleton unknown function unknown function -1 9587 9724
YP_009099729.1 NC_025428_p72 hypothetical protein singleton unknown function unknown function -1 47750 48163
YP_009099684.1 NC_025428_p27 hypothetical protein phrog_4212 unknown function unknown function 1 10666 10962
YP_009099737.1 NC_025428_p80 hypothetical protein singleton unknown function unknown function 1 55315 55521
YP_009099694.1 NC_025428_p37 hypothetical protein singleton unknown function unknown function -1 16332 17012
YP_009099728.1 NC_025428_p71 hypothetical protein phrog_4767 unknown function unknown function -1 47556 47750
YP_009099734.1 NC_025428_p77 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 52209 53402
YP_009099716.1 NC_025428_p59 portal protein phrog_21 portal protein head and packaging -1 37518 39176
YP_009099735.1 NC_025428_p78 hypothetical protein singleton unknown function unknown function -1 53406 54347
YP_009099668.1 NC_025428_p11 hypothetical protein phrog_10759 unknown function unknown function -1 4071 4610
YP_009099736.1 NC_025428_p79 hypothetical protein singleton unknown function unknown function -1 54473 55021
YP_009099661.1 NC_025428_p4 hypothetical protein singleton unknown function unknown function -1 1105 1278
YP_009099683.1 NC_025428_p26 hypothetical protein singleton unknown function unknown function 1 10221 10574
YP_009099706.1 NC_025428_p49 tail protein phrog_9221 tail length tape measure protein tail -1 31303 31512
YP_009099696.1 NC_025428_p39 hypothetical protein phrog_34283 unknown function unknown function -1 17422 17640
YP_009099723.1 NC_025428_p66 superfamily II DNA/RNA helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 45312 46757
YP_009099717.1 NC_025428_p60 head-to-tail joining protein phrog_75 head-tail adaptor Ad1 connector -1 39176 39379
YP_009099732.1 NC_025428_p75 hypothetical protein phrog_757 DNA methyltransferase other -1 50626 51402
YP_009099687.1 NC_025428_p30 hypothetical protein singleton unknown function unknown function 1 11729 12091
YP_009099718.1 NC_025428_p61 terminase large subunit phrog_15 terminase large subunit head and packaging -1 39389 41473