Genomic map of Shigella phage POCJ13 (NC_025434)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_025434
Definition
Shigella phage POCJ13, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Sepvirinae; Diegovirus.
DB of origin
REFSEQ
Length
62699
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
79
%GC
49.34
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009100281.1 NC_025434_p59 hypothetical protein phrog_32751 unknown function unknown function 1 40836 40982
YP_009100285.1 NC_025434_p63 hypothetical protein phrog_425 membrane associated protein moron, auxiliary metabolic gene and host takeover 1 44297 44914
YP_009100294.1 NC_025434_p72 hypothetical protein phrog_3658 unknown function unknown function 1 57909 58091
YP_009100295.1 NC_025434_p73 hypothetical protein singleton unknown function unknown function 1 58048 58176
YP_009100280.1 NC_025434_p58 super-infection exclusion protein phrog_1119 Cor superinfection exclusion protein moron, auxiliary metabolic gene and host takeover 1 40558 40785
YP_009100267.1 NC_025434_p45 Rha protein phrog_518 Rha-like transcriptional regulator transcription regulation 1 27648 28190
YP_009100277.1 NC_025434_p55 hypothetical protein phrog_399 structural protein head and packaging 1 37256 37906
YP_009100259.1 NC_025434_p37 mobile element protein phrog_143 unknown function unknown function 1 22632 24572
YP_009100264.1 NC_025434_p42 antirepressor protein phrog_524 anti-repressor Ant transcription regulation 1 26279 26851
YP_009100274.1 NC_025434_p52 hypothetical protein phrog_486 virion structural protein head and packaging 1 35805 36197
YP_009100236.1 NC_025434_p14 hypothetical protein phrog_191 CII-like transcriptional activator transcription regulation 1 9717 10013
YP_009100238.1 NC_025434_p16 primosomal protein I phrog_1701 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 10348 11343
YP_009100244.1 NC_025434_p22 helix-turn-helix family protein phrog_1373 transcriptional regulator transcription regulation -1 14338 14646
YP_009100263.1 NC_025434_p41 lysin phrog_7 endolysin lysis 1 25471 26004
YP_009100253.1 NC_025434_p31 hypothetical protein phrog_268 unknown function unknown function 1 19036 19230
YP_009100260.1 NC_025434_p38 hypothetical protein phrog_494 unknown function unknown function 1 24708 24887
YP_009100262.1 NC_025434_p40 holin lysis protein S phrog_20 holin lysis 1 25260 25466
YP_009100257.1 NC_025434_p35 shiga toxin I subunit B precursor phrog_851 Shiga toxin subunit B moron, auxiliary metabolic gene and host takeover 1 21858 22127
YP_009100271.1 NC_025434_p49 hypothetical protein phrog_156 portal protein head and packaging 1 31207 33351
YP_009100290.1 NC_025434_p68 hypothetical protein phrog_596 unknown function unknown function 1 47350 47796
YP_009100276.1 NC_025434_p54 hypothetical protein phrog_437 virion structural protein head and packaging 1 36693 37256
YP_009100301.1 NC_025434_p79 antirepressor protein phrog_6904 unknown function unknown function -1 61978 62265
YP_009100233.1 NC_025434_p11 antitermination protein N phrog_271 anti-termination protein N-like transcription regulation -1 7824 8096
YP_009100261.1 NC_025434_p39 hypothetical protein phrog_311 unknown function unknown function 1 24928 25173
YP_009100248.1 NC_025434_p26 hypothetical protein phrog_21161 unknown function unknown function 1 15631 16302
YP_009100232.1 NC_025434_p10 hypothetical protein phrog_2539 unknown function unknown function -1 7107 7820
YP_009100230.1 NC_025434_p8 Kil protein phrog_294 Kil protein for bacterial septation inhibition other -1 6166 6387
YP_009100245.1 NC_025434_p23 hypothetical protein phrog_2523 unknown function unknown function -1 14636 14899
YP_009100279.1 NC_025434_p57 hypothetical protein phrog_1121 tail fiber adhesin tail 1 40000 40545
YP_009100234.1 NC_025434_p12 transcriptional regulator phrog_4 transcriptional repressor transcription regulation -1 8491 9261
YP_009100256.1 NC_025434_p34 shiga toxin A-chain precursor phrog_866 Shiga toxin subunit A moron, auxiliary metabolic gene and host takeover 1 20901 21848
YP_009100249.1 NC_025434_p27 antirepressor protein phrog_377 anti-repressor Ant transcription regulation 1 17042 17710
YP_009100288.1 NC_025434_p66 hypothetical protein phrog_610 unknown function unknown function 1 46196 46597
YP_009100225.1 NC_025434_p3 enzyme phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 1776 2456
YP_009100299.1 NC_025434_p77 hypothetical protein phrog_667 unknown function unknown function -1 60555 60839
YP_009100292.1 NC_025434_p70 hypothetical protein phrog_601 unknown function unknown function 1 48069 49334
YP_009100289.1 NC_025434_p67 hypothetical protein phrog_611 unknown function unknown function 1 46691 47347
YP_009100269.1 NC_025434_p47 DNA packaging protein phrog_370 terminase small subunit head and packaging 1 28714 29520
YP_009100223.1 NC_025434_p1 integrase phrog_1 integrase integration and excision -1 52 1215
YP_009100265.1 NC_025434_p43 outer membrane lytic protein Rz phrog_13 Rz-like spanin lysis 1 27008 27445
YP_009100297.1 NC_025434_p75 hypothetical protein phrog_631 unknown function unknown function -1 59101 59616
YP_009100226.1 NC_025434_p4 recombinational DNA repair protein phrog_252 Bet-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 2453 3238
YP_009100266.1 NC_025434_p44 hypothetical protein phrog_16173 unknown function unknown function 1 27536 27670
YP_009100298.1 NC_025434_p76 hypothetical protein phrog_250 unknown function unknown function -1 59618 60568
YP_009100293.1 NC_025434_p71 hypothetical protein phrog_616 unknown function unknown function 1 49404 57785
YP_009100237.1 NC_025434_p15 hypothetical protein phrog_2751 unknown function unknown function 1 10028 10246
YP_009100254.1 NC_025434_p32 antitermination protein Q phrog_79 anti-termination protein Q-like transcription regulation 1 19223 19603
YP_009100270.1 NC_025434_p48 hypothetical protein phrog_2 terminase large subunit head and packaging 1 29546 31207
YP_009100231.1 NC_025434_p9 hypothetical protein phrog_2982 unknown function unknown function -1 6719 7075
YP_009100240.1 NC_025434_p18 hypothetical protein phrog_630 unknown function unknown function 1 12116 12886
YP_009100275.1 NC_025434_p53 hypothetical protein phrog_482 unknown function unknown function 1 36248 36709
YP_009100252.1 NC_025434_p30 holliday junction resolvase phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 18674 19036
YP_009100258.1 NC_025434_p36 hypothetical protein phrog_23494 unknown function unknown function 1 22358 22477
YP_009100272.1 NC_025434_p50 hypothetical protein phrog_479 unknown function unknown function 1 33509 34513
YP_009100250.1 NC_025434_p28 NinB DNA recombination phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 17765 18175
YP_009100247.1 NC_025434_p25 hypothetical protein phrog_19308 unknown function unknown function 1 15194 15619
YP_009100286.1 NC_025434_p64 attachment invasion locus protein precursor phrog_108 Lom outer membrane protein other 1 45032 45766
YP_009100296.1 NC_025434_p74 EaA protein phrog_60 unknown function unknown function -1 58178 59104
YP_009100251.1 NC_025434_p29 hypothetical protein phrog_131 HNH endonuclease DNA, RNA and nucleotide metabolism 1 18384 18677
YP_009100283.1 NC_025434_p61 tail fiber protein phrog_496 tail fiber protein tail 1 42730 43998
YP_009100287.1 NC_025434_p65 hypothetical protein phrog_251 MokW-like host killing moron, auxiliary metabolic gene and host takeover 1 45999 46139
YP_009100268.1 NC_025434_p46 hypothetical protein phrog_26210 unknown function unknown function 1 28545 28658
YP_009100300.1 NC_025434_p78 antirepressor protein phrog_377 anti-repressor Ant transcription regulation -1 61105 61728
YP_009100242.1 NC_025434_p20 hypothetical protein phrog_1305 DNA binding protein DNA, RNA and nucleotide metabolism -1 13365 14039
YP_009100241.1 NC_025434_p19 LygF phrog_142 Ren-like exclusion protein moron, auxiliary metabolic gene and host takeover 1 12901 13332
YP_009100229.1 NC_025434_p7 hypothetical protein phrog_2016 unknown function unknown function -1 5694 6080
YP_009100278.1 NC_025434_p56 tail fiber protein phrog_366 tail fiber protein tail 1 37903 39924
YP_009100273.1 NC_025434_p51 hypothetical protein phrog_334 major head protein head and packaging 1 34536 35750
YP_009100246.1 NC_025434_p24 hypothetical protein phrog_29617 unknown function unknown function 1 14879 15070
YP_009100282.1 NC_025434_p60 hypothetical protein phrog_511 internal virion protein head and packaging 1 41108 42733
YP_009100228.1 NC_025434_p6 exodeoxyribonuclease VIII phrog_607 exonuclease VII DNA, RNA and nucleotide metabolism -1 3537 5585
YP_009100224.1 NC_025434_p2 hypothetical protein phrog_285 unknown function unknown function -1 1477 1728
YP_009100227.1 NC_025434_p5 mobile element protein phrog_259 gam-like host nuclease inhibitor moron, auxiliary metabolic gene and host takeover -1 3244 3540
YP_009100255.1 NC_025434_p33 hypothetical protein phrog_34160 unknown function unknown function 1 19735 20328
YP_009100291.1 NC_025434_p69 hypothetical protein phrog_594 unknown function unknown function 1 47807 48058
YP_009100239.1 NC_025434_p17 DNA replication protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 11350 12090
YP_009100284.1 NC_025434_p62 outer membrane protein phrog_557 outer membrane protein other 1 44013 44291
YP_009100235.1 NC_025434_p13 hypothetical protein phrog_35 transcriptional repressor transcription regulation 1 9334 9573
YP_009100243.1 NC_025434_p21 hypothetical protein phrog_8371 unknown function unknown function 1 14038 14283