| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_025440 |
Definition |
Listeria phage WIL-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Jasinkavirinae; Pecentumvirus; Listeria virus WIL1. |
DB of origin |
REFSEQ |
Length |
134369 |
Host Name |
Listeria monocytogenes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
38 |
%GC |
35.98 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009100975.1 | NC_025440_p12 | metallophosphoesterase | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 54893 | 56059 |
| YP_009100996.1 | NC_025440_p33 | capsid protein precursor | phrog_752 | major head protein | head and packaging | -1 | 119660 | 121063 |
| YP_009100983.1 | NC_025440_p20 | primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 81550 | 82611 |
| YP_009100966.1 | NC_025440_p3 | hypothetical protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 6838 | 8358 |
| YP_009100977.1 | NC_025440_p14 | recA-like recombinase | phrog_97 | UvsX-like recombinase | other | -1 | 59868 | 61112 |
| YP_009100980.1 | NC_025440_p17 | PcfJ domain-containing protein | phrog_9253 | unknown function | unknown function | -1 | 67607 | 70075 |
| YP_009101000.1 | NC_025440_p37 | hypothetical protein | phrog_1063 | terminase small subunit | head and packaging | -1 | 131749 | 132165 |
| YP_009100998.1 | NC_025440_p35 | N-acetylmuramoyl-L-alanine amidase | phrog_5182 | endolysin | lysis | -1 | 126368 | 127393 |
| YP_009100993.1 | NC_025440_p30 | tail lysin | phrog_1015 | tail protein with lysin activity | tail | -1 | 106057 | 108444 |
| YP_009100973.1 | NC_025440_p10 | hypothetical protein | phrog_249 | porphyrin biosynthesis | moron, auxiliary metabolic gene and host takeover | -1 | 48686 | 49702 |
| YP_009100969.1 | NC_025440_p6 | hypothetical protein | phrog_9011 | unknown function | unknown function | -1 | 41959 | 42435 |
| YP_009100974.1 | NC_025440_p11 | hypothetical protein | phrog_1113 | unknown function | unknown function | -1 | 51490 | 52374 |
| YP_009100999.1 | NC_025440_p36 | terminase large subunit | phrog_675 | terminase large subunit | head and packaging | -1 | 129565 | 131118 |
| YP_009100989.1 | NC_025440_p26 | tail protein | phrog_877 | unknown function | unknown function | -1 | 93386 | 96724 |
| YP_009100976.1 | NC_025440_p13 | hypothetical protein | phrog_1850 | exopolyphosphatase | other | -1 | 56223 | 57152 |
| YP_009100992.1 | NC_025440_p29 | glycerophosphoryl diester phosphodiesterase | phrog_7994 | glycerophosphoryl diester phosphodiesterase | other | -1 | 104507 | 106039 |
| YP_009100978.1 | NC_025440_p15 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 63055 | 65223 |
| YP_009100972.1 | NC_025440_p9 | hypothetical protein | phrog_7005 | unknown function | unknown function | -1 | 47854 | 48699 |
| YP_009100994.1 | NC_025440_p31 | tail lysin | phrog_1047 | tail associated lysin | tail | -1 | 108490 | 112125 |
| YP_009100997.1 | NC_025440_p34 | portal protein | phrog_12 | portal protein | head and packaging | -1 | 123033 | 124550 |
| YP_009100981.1 | NC_025440_p18 | nicotinamide phosphoribosyltransferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | -1 | 70162 | 71946 |
| YP_009100995.1 | NC_025440_p32 | tail sheath protein | phrog_279 | tail sheath | tail | -1 | 114008 | 115696 |
| YP_009100968.1 | NC_025440_p5 | hypothetical protein | phrog_11450 | unknown function | unknown function | -1 | 26096 | 27259 |
| YP_009100991.1 | NC_025440_p28 | structural protein | phrog_6 | baseplate wedge subunit | tail | -1 | 101461 | 102456 |
| YP_009100982.1 | NC_025440_p19 | ribonucleotide reductase | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | -1 | 76901 | 79180 |
| YP_009100965.1 | NC_025440_p2 | hypothetical protein | phrog_9386 | unknown function | unknown function | 1 | 4434 | 4841 |
| YP_009100970.1 | NC_025440_p7 | hypothetical protein | phrog_9186 | unknown function | unknown function | -1 | 43112 | 44221 |
| YP_009100964.1 | NC_025440_p1 | hypothetical protein | phrog_9075 | unknown function | unknown function | 1 | 1234 | 1665 |
| YP_009100979.1 | NC_025440_p16 | hypothetical protein | phrog_1054 | unknown function | unknown function | -1 | 66725 | 67513 |
| YP_009100971.1 | NC_025440_p8 | hypothetical protein | phrog_1104 | virion structural protein | head and packaging | -1 | 44336 | 44803 |
| YP_009100967.1 | NC_025440_p4 | hypothetical protein | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 9645 | 10898 |
| YP_009100990.1 | NC_025440_p27 | portal protein | phrog_2386 | virion structural protein | head and packaging | -1 | 97496 | 101017 |
| YP_009100984.1 | NC_025440_p21 | repair exonuclease | phrog_77 | SbcC-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | -1 | 83221 | 85104 |
| YP_009100985.1 | NC_025440_p22 | exonuclease | phrog_100 | SbcD-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | -1 | 85199 | 86152 |
| YP_009101001.1 | NC_025440_p38 | hypothetical protein | phrog_3395 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 132427 | 132834 |
| YP_009100987.1 | NC_025440_p24 | winged helix-turn-helix | phrog_1098 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 87747 | 89387 |
| YP_009100988.1 | NC_025440_p25 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 89402 | 91147 |
| YP_009100986.1 | NC_025440_p23 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 86266 | 87222 |