Genomic map of Salmonella virus Chi (NC_025442)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_025442
Definition
Salmonella phage Chi, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Chivirus.
DB of origin
REFSEQ
Length
59578
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
75
%GC
56.51
Number of singletons
1
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009101133.1 NC_025442_p38 hypothetical protein phrog_873 endolysin head and packaging 1 40677 41390
YP_009101125.1 NC_025442_p30 minor tail protein phrog_6284 tail protein tail 1 29234 33124
YP_009101141.1 NC_025442_p46 hypothetical protein phrog_3012 unknown function unknown function -1 44591 44872
YP_009101103.1 NC_025442_p8 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 6906 8945
YP_009101153.1 NC_025442_p58 exonuclease phrog_724 exonuclease recombination-associated DNA, RNA and nucleotide metabolism -1 50916 51989
YP_009101111.1 NC_025442_p16 hypothetical protein phrog_49 head decoration head and packaging 1 16649 17068
YP_009101126.1 NC_025442_p31 tail fiber protein phrog_7049 tail fiber protein tail 1 33124 33864
YP_009101120.1 NC_025442_p25 tape measure phrog_2335 tail length tape measure protein tail 1 21946 26241
YP_009101147.1 NC_025442_p52 DNA methylase domain protein phrog_111 DNA methyltransferase other -1 47010 47696
YP_009101128.1 NC_025442_p33 hypothetical protein phrog_2448 unknown function unknown function 1 34892 35854
YP_009101157.1 NC_025442_p62 hypothetical protein phrog_6647 unknown function unknown function -1 53132 53503
YP_009101142.1 NC_025442_p47 hypothetical protein phrog_9072 thymidylate synthase complementing protein DNA, RNA and nucleotide metabolism -1 44953 45465
YP_009101132.1 NC_025442_p37 hypothetical protein phrog_7686 Rz-like spanin lysis 1 40335 40673
YP_009101137.1 NC_025442_p42 ninC-like protein phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover -1 42230 43129
YP_009101123.1 NC_025442_p28 hypothetical protein phrog_1180 tail assembly chaperone tail 1 28775 29005
YP_009101113.1 NC_025442_p18 hypothetical protein phrog_7559 unknown function unknown function 1 18207 18500
YP_009101162.1 NC_025442_p67 hypothetical protein phrog_10759 unknown function unknown function 1 55295 55777
YP_009101117.1 NC_025442_p22 major tail protein phrog_807 major tail protein with Ig-like domain tail 1 20008 21153
YP_009101107.1 NC_025442_p12 TerL phrog_15 terminase large subunit head and packaging 1 11302 13377
YP_009101096.1 NC_025442_p1 HTH DNA binding domain protein phrog_2339 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 614 901
YP_009101145.1 NC_025442_p50 hypothetical protein phrog_9067 unknown function unknown function -1 45909 46103
YP_009101146.1 NC_025442_p51 hypothetical protein phrog_8209 unknown function unknown function -1 46114 46932
YP_009101168.1 NC_025442_p73 hypothetical protein phrog_8059 unknown function unknown function 1 58338 58544
YP_009101152.1 NC_025442_p57 hypothetical protein phrog_7200 unknown function unknown function -1 50680 50913
YP_009101099.1 NC_025442_p4 hypothetical protein phrog_7721 unknown function unknown function 1 4047 4463
YP_009101114.1 NC_025442_p19 hypothetical protein phrog_4858 unknown function unknown function 1 18503 18868
YP_009101104.1 NC_025442_p9 endonuclease phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 8947 9234
YP_009101127.1 NC_025442_p32 hypothetical protein phrog_2448 unknown function unknown function 1 33874 34881
YP_009101135.1 NC_025442_p40 hypothetical protein phrog_1275 Rz-like spanin lysis 1 41592 41771
YP_009101131.1 NC_025442_p36 hypothetical protein phrog_7226 unknown function unknown function 1 38141 40270
YP_009101140.1 NC_025442_p45 hypothetical protein phrog_9301 unknown function unknown function -1 44283 44594
YP_009101118.1 NC_025442_p23 tail assembly chaperone phrog_11703 tail length tape measure protein tail 1 21250 21953
YP_009101136.1 NC_025442_p41 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism -1 41772 42233
YP_009101134.1 NC_025442_p39 hypothetical protein phrog_1026 Rz-like spanin lysis 1 41387 41641
YP_009101150.1 NC_025442_p55 hypothetical protein phrog_6886 unknown function unknown function -1 49464 50204
YP_009101105.1 NC_025442_p10 recombination ATPase helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 9227 10756
YP_009101160.1 NC_025442_p65 hypothetical protein phrog_3199 unknown function unknown function 1 54538 55077
YP_009101138.1 NC_025442_p43 hypothetical protein phrog_8098 unknown function unknown function -1 43119 43832
YP_009101155.1 NC_025442_p60 hypothetical protein phrog_7734 unknown function unknown function -1 52298 52633
YP_009101156.1 NC_025442_p61 hypothetical protein phrog_7942 unknown function unknown function -1 52620 53060
YP_009101110.1 NC_025442_p15 capsid maturation protease phrog_53 head maturation protease head and packaging 1 15318 16634
YP_009101161.1 NC_025442_p66 hypothetical protein phrog_2385 unknown function unknown function 1 55098 55292
YP_009101163.1 NC_025442_p68 hypothetical protein phrog_7744 unknown function unknown function 1 55789 55992
YP_009101121.1 NC_025442_p26 distal tail protein phrog_1082 tail assembly protein tail 1 26247 27935
YP_009101159.1 NC_025442_p64 hypothetical protein phrog_4445 unknown function unknown function 1 54264 54524
YP_009101149.1 NC_025442_p54 hypothetical protein phrog_8641 unknown function unknown function -1 48793 49467
YP_009101148.1 NC_025442_p53 hypothetical protein phrog_8386 unknown function unknown function -1 47696 48796
YP_009101122.1 NC_025442_p27 hypothetical protein phrog_778 tail assembly protein tail 1 27945 28763
YP_009101106.1 NC_025442_p11 TerS phrog_141 terminase small subunit head and packaging 1 10743 11312
YP_009101167.1 NC_025442_p72 hypothetical protein phrog_3786 unknown function unknown function 1 58063 58335
YP_009101169.1 NC_025442_p74 hypothetical protein phrog_7646 unknown function unknown function 1 58537 58791
YP_009101144.1 NC_025442_p49 hypothetical protein phrog_8705 unknown function unknown function -1 45691 45912
YP_009101165.1 NC_025442_p70 hypothetical protein phrog_8635 unknown function unknown function 1 56550 56771
YP_009101164.1 NC_025442_p69 hypothetical protein phrog_9514 unknown function unknown function 1 56005 56553
YP_009101154.1 NC_025442_p59 hypothetical protein phrog_7965 unknown function unknown function -1 51970 52311
YP_009101166.1 NC_025442_p71 hypothetical protein phrog_10087 unknown function unknown function 1 56897 58051
YP_009101100.1 NC_025442_p5 hypothetical protein phrog_8318 unknown function unknown function 1 4526 4855
YP_009101158.1 NC_025442_p63 hypothetical protein singleton unknown function unknown function 1 53976 54149
YP_009101116.1 NC_025442_p21 hypothetical protein phrog_5078 tail terminator connector 1 19491 19994
YP_009101112.1 NC_025442_p17 major capsid protein phrog_29 major head protein head and packaging 1 17081 18145
YP_009101124.1 NC_025442_p29 hypothetical protein phrog_1196 tail assembly chaperone tail 1 29005 29244
YP_009101108.1 NC_025442_p13 hypothetical protein phrog_75 head-tail adaptor Ad1 connector 1 13388 13642
YP_009101139.1 NC_025442_p44 hypothetical protein phrog_8264 unknown function unknown function -1 43834 44286
YP_009101115.1 NC_025442_p20 hypothetical protein phrog_27 tail completion or Neck1 protein connector 1 18868 19494
YP_009101098.1 NC_025442_p3 transcriptional regulator phrog_7401 unknown function unknown function -1 3524 3805
YP_009101130.1 NC_025442_p35 hypothetical protein phrog_10924 unknown function unknown function 1 36902 38131
YP_009101101.1 NC_025442_p6 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 4848 6188
YP_009101151.1 NC_025442_p56 hypothetical protein phrog_7587 unknown function unknown function -1 50400 50675
YP_009101170.1 NC_025442_p75 hypothetical protein phrog_8116 unknown function unknown function 1 58784 59035
YP_009101102.1 NC_025442_p7 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 6243 6839
YP_009101119.1 NC_025442_p24 tail assembly chaperone phrog_5260 tail protein tail 1 21250 21711
YP_009101109.1 NC_025442_p14 portal protein phrog_21 portal protein head and packaging 1 13639 15321
YP_009101143.1 NC_025442_p48 hypothetical protein phrog_9722 unknown function unknown function -1 45447 45701
YP_009101129.1 NC_025442_p34 hypothetical protein phrog_2448 unknown function unknown function 1 35868 36887
YP_009101097.1 NC_025442_p2 DNA primase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism -1 942 3527