| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_025442 |
Definition |
Salmonella phage Chi, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Chivirus. |
DB of origin |
REFSEQ |
Length |
59578 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
75 |
%GC |
56.51 |
Number of singletons |
1 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009101133.1 | NC_025442_p38 | hypothetical protein | phrog_873 | endolysin | head and packaging | 1 | 40677 | 41390 |
| YP_009101125.1 | NC_025442_p30 | minor tail protein | phrog_6284 | tail protein | tail | 1 | 29234 | 33124 |
| YP_009101141.1 | NC_025442_p46 | hypothetical protein | phrog_3012 | unknown function | unknown function | -1 | 44591 | 44872 |
| YP_009101103.1 | NC_025442_p8 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 6906 | 8945 |
| YP_009101153.1 | NC_025442_p58 | exonuclease | phrog_724 | exonuclease recombination-associated | DNA, RNA and nucleotide metabolism | -1 | 50916 | 51989 |
| YP_009101111.1 | NC_025442_p16 | hypothetical protein | phrog_49 | head decoration | head and packaging | 1 | 16649 | 17068 |
| YP_009101126.1 | NC_025442_p31 | tail fiber protein | phrog_7049 | tail fiber protein | tail | 1 | 33124 | 33864 |
| YP_009101120.1 | NC_025442_p25 | tape measure | phrog_2335 | tail length tape measure protein | tail | 1 | 21946 | 26241 |
| YP_009101147.1 | NC_025442_p52 | DNA methylase domain protein | phrog_111 | DNA methyltransferase | other | -1 | 47010 | 47696 |
| YP_009101128.1 | NC_025442_p33 | hypothetical protein | phrog_2448 | unknown function | unknown function | 1 | 34892 | 35854 |
| YP_009101157.1 | NC_025442_p62 | hypothetical protein | phrog_6647 | unknown function | unknown function | -1 | 53132 | 53503 |
| YP_009101142.1 | NC_025442_p47 | hypothetical protein | phrog_9072 | thymidylate synthase complementing protein | DNA, RNA and nucleotide metabolism | -1 | 44953 | 45465 |
| YP_009101132.1 | NC_025442_p37 | hypothetical protein | phrog_7686 | Rz-like spanin | lysis | 1 | 40335 | 40673 |
| YP_009101137.1 | NC_025442_p42 | ninC-like protein | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | -1 | 42230 | 43129 |
| YP_009101123.1 | NC_025442_p28 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 28775 | 29005 |
| YP_009101113.1 | NC_025442_p18 | hypothetical protein | phrog_7559 | unknown function | unknown function | 1 | 18207 | 18500 |
| YP_009101162.1 | NC_025442_p67 | hypothetical protein | phrog_10759 | unknown function | unknown function | 1 | 55295 | 55777 |
| YP_009101117.1 | NC_025442_p22 | major tail protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 20008 | 21153 |
| YP_009101107.1 | NC_025442_p12 | TerL | phrog_15 | terminase large subunit | head and packaging | 1 | 11302 | 13377 |
| YP_009101096.1 | NC_025442_p1 | HTH DNA binding domain protein | phrog_2339 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 614 | 901 |
| YP_009101145.1 | NC_025442_p50 | hypothetical protein | phrog_9067 | unknown function | unknown function | -1 | 45909 | 46103 |
| YP_009101146.1 | NC_025442_p51 | hypothetical protein | phrog_8209 | unknown function | unknown function | -1 | 46114 | 46932 |
| YP_009101168.1 | NC_025442_p73 | hypothetical protein | phrog_8059 | unknown function | unknown function | 1 | 58338 | 58544 |
| YP_009101152.1 | NC_025442_p57 | hypothetical protein | phrog_7200 | unknown function | unknown function | -1 | 50680 | 50913 |
| YP_009101099.1 | NC_025442_p4 | hypothetical protein | phrog_7721 | unknown function | unknown function | 1 | 4047 | 4463 |
| YP_009101114.1 | NC_025442_p19 | hypothetical protein | phrog_4858 | unknown function | unknown function | 1 | 18503 | 18868 |
| YP_009101104.1 | NC_025442_p9 | endonuclease | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 8947 | 9234 |
| YP_009101127.1 | NC_025442_p32 | hypothetical protein | phrog_2448 | unknown function | unknown function | 1 | 33874 | 34881 |
| YP_009101135.1 | NC_025442_p40 | hypothetical protein | phrog_1275 | Rz-like spanin | lysis | 1 | 41592 | 41771 |
| YP_009101131.1 | NC_025442_p36 | hypothetical protein | phrog_7226 | unknown function | unknown function | 1 | 38141 | 40270 |
| YP_009101140.1 | NC_025442_p45 | hypothetical protein | phrog_9301 | unknown function | unknown function | -1 | 44283 | 44594 |
| YP_009101118.1 | NC_025442_p23 | tail assembly chaperone | phrog_11703 | tail length tape measure protein | tail | 1 | 21250 | 21953 |
| YP_009101136.1 | NC_025442_p41 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | -1 | 41772 | 42233 |
| YP_009101134.1 | NC_025442_p39 | hypothetical protein | phrog_1026 | Rz-like spanin | lysis | 1 | 41387 | 41641 |
| YP_009101150.1 | NC_025442_p55 | hypothetical protein | phrog_6886 | unknown function | unknown function | -1 | 49464 | 50204 |
| YP_009101105.1 | NC_025442_p10 | recombination ATPase helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 9227 | 10756 |
| YP_009101160.1 | NC_025442_p65 | hypothetical protein | phrog_3199 | unknown function | unknown function | 1 | 54538 | 55077 |
| YP_009101138.1 | NC_025442_p43 | hypothetical protein | phrog_8098 | unknown function | unknown function | -1 | 43119 | 43832 |
| YP_009101155.1 | NC_025442_p60 | hypothetical protein | phrog_7734 | unknown function | unknown function | -1 | 52298 | 52633 |
| YP_009101156.1 | NC_025442_p61 | hypothetical protein | phrog_7942 | unknown function | unknown function | -1 | 52620 | 53060 |
| YP_009101110.1 | NC_025442_p15 | capsid maturation protease | phrog_53 | head maturation protease | head and packaging | 1 | 15318 | 16634 |
| YP_009101161.1 | NC_025442_p66 | hypothetical protein | phrog_2385 | unknown function | unknown function | 1 | 55098 | 55292 |
| YP_009101163.1 | NC_025442_p68 | hypothetical protein | phrog_7744 | unknown function | unknown function | 1 | 55789 | 55992 |
| YP_009101121.1 | NC_025442_p26 | distal tail protein | phrog_1082 | tail assembly protein | tail | 1 | 26247 | 27935 |
| YP_009101159.1 | NC_025442_p64 | hypothetical protein | phrog_4445 | unknown function | unknown function | 1 | 54264 | 54524 |
| YP_009101149.1 | NC_025442_p54 | hypothetical protein | phrog_8641 | unknown function | unknown function | -1 | 48793 | 49467 |
| YP_009101148.1 | NC_025442_p53 | hypothetical protein | phrog_8386 | unknown function | unknown function | -1 | 47696 | 48796 |
| YP_009101122.1 | NC_025442_p27 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 27945 | 28763 |
| YP_009101106.1 | NC_025442_p11 | TerS | phrog_141 | terminase small subunit | head and packaging | 1 | 10743 | 11312 |
| YP_009101167.1 | NC_025442_p72 | hypothetical protein | phrog_3786 | unknown function | unknown function | 1 | 58063 | 58335 |
| YP_009101169.1 | NC_025442_p74 | hypothetical protein | phrog_7646 | unknown function | unknown function | 1 | 58537 | 58791 |
| YP_009101144.1 | NC_025442_p49 | hypothetical protein | phrog_8705 | unknown function | unknown function | -1 | 45691 | 45912 |
| YP_009101165.1 | NC_025442_p70 | hypothetical protein | phrog_8635 | unknown function | unknown function | 1 | 56550 | 56771 |
| YP_009101164.1 | NC_025442_p69 | hypothetical protein | phrog_9514 | unknown function | unknown function | 1 | 56005 | 56553 |
| YP_009101154.1 | NC_025442_p59 | hypothetical protein | phrog_7965 | unknown function | unknown function | -1 | 51970 | 52311 |
| YP_009101166.1 | NC_025442_p71 | hypothetical protein | phrog_10087 | unknown function | unknown function | 1 | 56897 | 58051 |
| YP_009101100.1 | NC_025442_p5 | hypothetical protein | phrog_8318 | unknown function | unknown function | 1 | 4526 | 4855 |
| YP_009101158.1 | NC_025442_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53976 | 54149 |
| YP_009101116.1 | NC_025442_p21 | hypothetical protein | phrog_5078 | tail terminator | connector | 1 | 19491 | 19994 |
| YP_009101112.1 | NC_025442_p17 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 17081 | 18145 |
| YP_009101124.1 | NC_025442_p29 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 29005 | 29244 |
| YP_009101108.1 | NC_025442_p13 | hypothetical protein | phrog_75 | head-tail adaptor Ad1 | connector | 1 | 13388 | 13642 |
| YP_009101139.1 | NC_025442_p44 | hypothetical protein | phrog_8264 | unknown function | unknown function | -1 | 43834 | 44286 |
| YP_009101115.1 | NC_025442_p20 | hypothetical protein | phrog_27 | tail completion or Neck1 protein | connector | 1 | 18868 | 19494 |
| YP_009101098.1 | NC_025442_p3 | transcriptional regulator | phrog_7401 | unknown function | unknown function | -1 | 3524 | 3805 |
| YP_009101130.1 | NC_025442_p35 | hypothetical protein | phrog_10924 | unknown function | unknown function | 1 | 36902 | 38131 |
| YP_009101101.1 | NC_025442_p6 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 4848 | 6188 |
| YP_009101151.1 | NC_025442_p56 | hypothetical protein | phrog_7587 | unknown function | unknown function | -1 | 50400 | 50675 |
| YP_009101170.1 | NC_025442_p75 | hypothetical protein | phrog_8116 | unknown function | unknown function | 1 | 58784 | 59035 |
| YP_009101102.1 | NC_025442_p7 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 6243 | 6839 |
| YP_009101119.1 | NC_025442_p24 | tail assembly chaperone | phrog_5260 | tail protein | tail | 1 | 21250 | 21711 |
| YP_009101109.1 | NC_025442_p14 | portal protein | phrog_21 | portal protein | head and packaging | 1 | 13639 | 15321 |
| YP_009101143.1 | NC_025442_p48 | hypothetical protein | phrog_9722 | unknown function | unknown function | -1 | 45447 | 45701 |
| YP_009101129.1 | NC_025442_p34 | hypothetical protein | phrog_2448 | unknown function | unknown function | 1 | 35868 | 36887 |
| YP_009101097.1 | NC_025442_p2 | DNA primase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 942 | 3527 |