| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_025443 |
Definition |
Salmonella phage 9NA, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nonanavirus. |
DB of origin |
REFSEQ |
Length |
52869 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
84 |
%GC |
42.9 |
Number of singletons |
13 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009101220.1 | NC_025443_p50 | tail tape measure protein | phrog_1107 | tail length tape measure protein | tail | 1 | 25260 | 28175 |
| YP_009101223.1 | NC_025443_p53 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 29181 | 29540 |
| YP_009101183.1 | NC_025443_p13 | hypothetical protein | phrog_8329 | unknown function | unknown function | 1 | 6174 | 6524 |
| YP_009101177.1 | NC_025443_p7 | hypothetical protein | phrog_8294 | unknown function | unknown function | -1 | 2291 | 2464 |
| YP_009101228.1 | NC_025443_p58 | hypothetical protein | phrog_1322 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 34920 | 35150 |
| YP_009101250.1 | NC_025443_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50290 | 50421 |
| YP_009101175.1 | NC_025443_p5 | hypothetical protein | phrog_25300 | unknown function | unknown function | -1 | 1706 | 2008 |
| YP_009101210.1 | NC_025443_p40 | major capsid protein | phrog_1005 | major head protein | head and packaging | 1 | 18282 | 19301 |
| YP_009101252.1 | NC_025443_p82 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51410 | 51571 |
| YP_009101196.1 | NC_025443_p26 | hypothetical protein | phrog_25244 | unknown function | unknown function | -1 | 11186 | 11440 |
| YP_009101224.1 | NC_025443_p54 | tail tip protein | phrog_469 | tail protein | tail | 1 | 29533 | 32055 |
| YP_009101213.1 | NC_025443_p43 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 20498 | 20872 |
| YP_009101247.1 | NC_025443_p77 | hypothetical protein | phrog_26050 | unknown function | unknown function | 1 | 49218 | 49430 |
| YP_009101237.1 | NC_025443_p67 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 41181 | 42326 |
| YP_009101181.1 | NC_025443_p11 | large terminase subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 4070 | 5833 |
| YP_009101230.1 | NC_025443_p60 | hypothetical protein | phrog_25980 | unknown function | unknown function | -1 | 35600 | 35833 |
| YP_009101211.1 | NC_025443_p41 | hypothetical protein | phrog_19242 | unknown function | unknown function | 1 | 19365 | 19748 |
| YP_009101214.1 | NC_025443_p44 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 20872 | 21300 |
| YP_009101219.1 | NC_025443_p49 | tail assembly chaperone | phrog_313 | Tail assembly chaperone | tail | 1 | 24508 | 24933 |
| YP_009101203.1 | NC_025443_p33 | prohead assembly protein | phrog_2468 | head morphogenesis | head and packaging | 1 | 13743 | 14702 |
| YP_009101242.1 | NC_025443_p72 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 45585 | 46076 |
| YP_009101200.1 | NC_025443_p30 | hypothetical protein | phrog_26866 | unknown function | unknown function | 1 | 13177 | 13368 |
| YP_009101229.1 | NC_025443_p59 | hypothetical protein | phrog_1152 | Rz-like spanin | lysis | 1 | 35137 | 35535 |
| YP_009101190.1 | NC_025443_p20 | hypothetical protein | phrog_36680 | unknown function | unknown function | -1 | 7960 | 8271 |
| YP_009101192.1 | NC_025443_p22 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 8779 | 10134 |
| YP_009101249.1 | NC_025443_p79 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50100 | 50297 |
| YP_009101225.1 | NC_025443_p55 | tailspike protein | phrog_1819 | tail spike protein | tail | -1 | 32147 | 34168 |
| YP_009101184.1 | NC_025443_p14 | hypothetical protein | phrog_7239 | unknown function | unknown function | 1 | 6511 | 6765 |
| YP_009101251.1 | NC_025443_p81 | hypothetical protein | phrog_1033 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 50488 | 51252 |
| YP_009101245.1 | NC_025443_p75 | hypothetical protein | phrog_9291 | unknown function | unknown function | 1 | 48695 | 48907 |
| YP_009101185.1 | NC_025443_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6776 | 6940 |
| YP_009101227.1 | NC_025443_p57 | endolysin | phrog_465 | endolysin | lysis | 1 | 34520 | 34909 |
| YP_009101207.1 | NC_025443_p37 | hypothetical protein | phrog_1530 | DNA methyltransferase | other | 1 | 16199 | 16609 |
| YP_009101187.1 | NC_025443_p17 | hypothetical protein | phrog_16556 | unknown function | unknown function | -1 | 7251 | 7412 |
| YP_009101206.1 | NC_025443_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15672 | 15794 |
| YP_009101236.1 | NC_025443_p66 | hypothetical protein | phrog_7011 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 40218 | 41168 |
| YP_009101226.1 | NC_025443_p56 | hypothetical protein | phrog_24402 | holin | lysis | 1 | 34197 | 34523 |
| YP_009101189.1 | NC_025443_p19 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7736 | 7963 |
| YP_009101174.1 | NC_025443_p4 | hypothetical protein | phrog_38795 | unknown function | unknown function | -1 | 1425 | 1634 |
| YP_009101222.1 | NC_025443_p52 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 28678 | 29184 |
| YP_009101186.1 | NC_025443_p16 | hypothetical protein | phrog_15669 | unknown function | unknown function | -1 | 6973 | 7248 |
| YP_009101215.1 | NC_025443_p45 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 21297 | 21719 |
| YP_009101235.1 | NC_025443_p65 | DNA polymerase | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 38237 | 40138 |
| YP_009101182.1 | NC_025443_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5959 | 6147 |
| YP_009101198.1 | NC_025443_p28 | deoxyuridine 5'-triphosphate nucleotidohydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | -1 | 11763 | 12266 |
| YP_009101204.1 | NC_025443_p34 | hypothetical protein | phrog_13999 | unknown function | unknown function | -1 | 14932 | 15144 |
| YP_009101218.1 | NC_025443_p48 | tail assembly chaperone | phrog_8233 | tail assembly chaperone | tail | 1 | 24508 | 25202 |
| YP_009101244.1 | NC_025443_p74 | P4 family primase | phrog_1829 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 46250 | 48604 |
| YP_009101212.1 | NC_025443_p42 | hypothetical protein | phrog_21889 | unknown function | unknown function | 1 | 19953 | 20498 |
| YP_009101208.1 | NC_025443_p38 | hypothetical protein | phrog_19463 | unknown function | unknown function | 1 | 16609 | 17868 |
| YP_009101199.1 | NC_025443_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12381 | 13187 |
| YP_009101238.1 | NC_025443_p68 | hypothetical protein | phrog_27827 | unknown function | unknown function | -1 | 42326 | 43120 |
| YP_009101254.1 | NC_025443_p84 | hypothetical protein | phrog_25538 | unknown function | unknown function | -1 | 51922 | 52620 |
| YP_009101194.1 | NC_025443_p24 | hypothetical protein | phrog_571 | unknown function | unknown function | -1 | 10480 | 10824 |
| YP_009101232.1 | NC_025443_p62 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | -1 | 36988 | 37338 |
| YP_009101205.1 | NC_025443_p35 | hypothetical protein | phrog_7033 | unknown function | unknown function | -1 | 15141 | 15407 |
| YP_009101240.1 | NC_025443_p70 | helicase DEXDc superfamily protein | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 43375 | 45039 |
| YP_009101221.1 | NC_025443_p51 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 28178 | 28681 |
| YP_009101239.1 | NC_025443_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43133 | 43378 |
| YP_009101195.1 | NC_025443_p25 | hypothetical protein | phrog_27401 | unknown function | unknown function | -1 | 10840 | 11184 |
| YP_009101171.1 | NC_025443_p1 | hypothetical protein | phrog_51 | terminase small subunit | head and packaging | 1 | 296 | 931 |
| YP_009101178.1 | NC_025443_p8 | hypothetical protein | phrog_31372 | unknown function | unknown function | -1 | 2468 | 2662 |
| YP_009101253.1 | NC_025443_p83 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51671 | 51925 |
| YP_009101179.1 | NC_025443_p9 | hypothetical protein | phrog_33811 | unknown function | unknown function | -1 | 2655 | 2987 |
| YP_009101191.1 | NC_025443_p21 | hypothetical protein | singleton | unknown function | unknown function | -1 | 8281 | 8637 |
| YP_009101197.1 | NC_025443_p27 | hypothetical protein | phrog_5086 | unknown function | unknown function | -1 | 11437 | 11763 |
| YP_009101176.1 | NC_025443_p6 | hypothetical protein | phrog_30984 | unknown function | unknown function | -1 | 2001 | 2288 |
| YP_009101209.1 | NC_025443_p39 | major virion structural protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 17868 | 18278 |
| YP_009101173.1 | NC_025443_p3 | hypothetical protein | phrog_10996 | unknown function | unknown function | -1 | 1176 | 1388 |
| YP_009101234.1 | NC_025443_p64 | hypothetical protein | phrog_19205 | unknown function | unknown function | -1 | 37660 | 38196 |
| YP_009101231.1 | NC_025443_p61 | DNA methylase | phrog_67 | DNA methyltransferase | other | -1 | 35817 | 36998 |
| YP_009101243.1 | NC_025443_p73 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 46073 | 46246 |
| YP_009101202.1 | NC_025443_p32 | hypothetical protein | phrog_13897 | unknown function | unknown function | 1 | 13555 | 13698 |
| YP_009101188.1 | NC_025443_p18 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7563 | 7739 |
| YP_009101233.1 | NC_025443_p63 | NinX | phrog_444 | unknown function | unknown function | -1 | 37335 | 37667 |
| YP_009101172.1 | NC_025443_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1006 | 1206 |
| YP_009101241.1 | NC_025443_p71 | exonuclease | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 45082 | 45588 |
| YP_009101193.1 | NC_025443_p23 | hypothetical protein | phrog_3362 | unknown function | unknown function | 1 | 10137 | 10448 |
| YP_009101216.1 | NC_025443_p46 | hypothetical protein | phrog_681 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 21691 | 22587 |
| YP_009101248.1 | NC_025443_p78 | C-5 cytosine DNA methylase | phrog_757 | DNA methyltransferase | other | 1 | 49427 | 50113 |
| YP_009101201.1 | NC_025443_p31 | NinH | phrog_268 | unknown function | unknown function | 1 | 13365 | 13568 |
| YP_009101246.1 | NC_025443_p76 | hypothetical protein | phrog_22517 | lipoprotein | other | 1 | 49028 | 49225 |
| YP_009101180.1 | NC_025443_p10 | hypothetical protein | phrog_21347 | unknown function | unknown function | -1 | 3128 | 3736 |
| YP_009101217.1 | NC_025443_p47 | major tail protein | phrog_290 | minor tail protein | tail | 1 | 22692 | 24149 |