Genomic map of Mycobacterium phage RedRock (NC_025444)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_025444
Definition
Mycobacterium phage RedRock, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus.
DB of origin
REFSEQ
Length
53332
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
95
%GC
64.52
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009101302.1 NC_025444_p48 HTH, DNA binding phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 32886 33308
YP_009101328.1 NC_025444_p74 hypothetical protein phrog_1173 unknown function unknown function -1 45979 46134
YP_009101345.1 NC_025444_p91 hypothetical protein phrog_8476 unknown function unknown function -1 50352 50642
YP_009101257.1 NC_025444_p3 hypothetical protein phrog_4491 unknown function unknown function 1 1976 2281
YP_009101260.1 NC_025444_p6 tail protein phrog_1260 minor tail protein tail 1 3171 4133
YP_009101256.1 NC_025444_p2 VIP2 phrog_3895 ADP-ribosyltransferase exoenzyme toxin moron, auxiliary metabolic gene and host takeover 1 1386 1979
YP_009101259.1 NC_025444_p5 hypothetical protein phrog_226 minor tail protein tail 1 2614 3084
YP_009101314.1 NC_025444_p60 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 39313 39741
YP_009101336.1 NC_025444_p82 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47718 48017
YP_009101266.1 NC_025444_p12 hypothetical protein phrog_526 holin lysis 1 7965 8399
YP_009101348.1 NC_025444_p94 hypothetical protein phrog_1445 unknown function unknown function -1 51635 51739
YP_009101261.1 NC_025444_p7 hypothetical protein phrog_819 tail protein tail 1 4133 5242
YP_009101344.1 NC_025444_p90 hypothetical protein phrog_1946 unknown function unknown function -1 50152 50352
YP_009101291.1 NC_025444_p37 ParB phrog_2639 Arc-like repressor transcription regulation 1 28448 28717
YP_009101289.1 NC_025444_p35 hypothetical protein phrog_2570 unknown function unknown function 1 27043 27231
YP_009101331.1 NC_025444_p77 hypothetical protein phrog_8490 unknown function unknown function -1 46706 46852
YP_009101277.1 NC_025444_p23 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 16248 16583
YP_009101334.1 NC_025444_p80 hypothetical protein phrog_3351 unknown function unknown function -1 47357 47584
YP_009101283.1 NC_025444_p29 minor tail protein phrog_106 minor tail protein tail 1 21090 22103
YP_009101273.1 NC_025444_p19 hypothetical protein phrog_748 head-tail connector protein connector 1 15120 15302
YP_009101270.1 NC_025444_p16 protease phrog_193 head maturation protease head and packaging 1 12742 13494
YP_009101320.1 NC_025444_p66 hypothetical protein phrog_397 unknown function unknown function -1 42023 42256
YP_009101278.1 NC_025444_p24 hypothetical protein phrog_123 tail terminator connector 1 16593 17018
YP_009101265.1 NC_025444_p11 LysA phrog_317 endolysin lysis 1 6487 7968
YP_009101306.1 NC_025444_p52 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 34861 36924
YP_009101294.1 NC_025444_p40 hypothetical protein phrog_383 unknown function unknown function -1 29237 29665
YP_009101342.1 NC_025444_p88 hypothetical protein phrog_586 unknown function unknown function -1 49638 49991
YP_009101297.1 NC_025444_p43 hypothetical protein phrog_3771 unknown function unknown function -1 30142 30432
YP_009101309.1 NC_025444_p55 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 37312 37992
YP_009101290.1 NC_025444_p36 ParA phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism 1 27898 28455
YP_009101269.1 NC_025444_p15 portal phrog_104 portal protein head and packaging 1 11153 12613
YP_009101323.1 NC_025444_p69 hypothetical protein phrog_520 unknown function unknown function -1 43269 43508
YP_009101346.1 NC_025444_p92 hypothetical protein phrog_6255 unknown function unknown function -1 50642 50890
YP_009101267.1 NC_025444_p13 LysB phrog_102 endolysin lysis 1 8396 9373
YP_009101282.1 NC_025444_p28 tape measure protein phrog_305 tail length tape measure protein tail 1 18558 21056
YP_009101299.1 NC_025444_p45 Pol1 phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 30682 32469
YP_009101318.1 NC_025444_p64 hypothetical protein phrog_13419 unknown function unknown function -1 41626 41772
YP_009101295.1 NC_025444_p41 hypothetical protein phrog_2099 unknown function unknown function -1 29643 29906
YP_009101280.1 NC_025444_p26 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 17739 18568
YP_009101285.1 NC_025444_p31 hypothetical protein phrog_352 minor tail protein tail 1 23888 24337
YP_009101293.1 NC_025444_p39 hypothetical protein phrog_542 unknown function unknown function -1 29082 29240
YP_009101274.1 NC_025444_p20 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 15306 15683
YP_009101307.1 NC_025444_p53 hypothetical protein phrog_2046 unknown function unknown function -1 36924 37127
YP_009101325.1 NC_025444_p71 RecB phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 43811 44719
YP_009101303.1 NC_025444_p49 hypothetical protein phrog_690 unknown function unknown function -1 33305 33508
YP_009101258.1 NC_025444_p4 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2278 2574
YP_009101329.1 NC_025444_p75 hypothetical protein phrog_4294 unknown function unknown function -1 46273 46431
YP_009101310.1 NC_025444_p56 hypothetical protein phrog_2436 unknown function unknown function -1 37989 38141
YP_009101326.1 NC_025444_p72 hypothetical protein phrog_1562 unknown function unknown function -1 44716 45123
YP_009101305.1 NC_025444_p51 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 34322 34849
YP_009101255.1 NC_025444_p1 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 370 1134
YP_009101304.1 NC_025444_p50 ThyX phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 33512 34246
YP_009101349.1 NC_025444_p95 hypothetical protein phrog_1676 unknown function unknown function -1 51743 52057
YP_009101312.1 NC_025444_p58 hypothetical protein phrog_474 phosphofructokinase other -1 38911 39237
YP_009101272.1 NC_025444_p18 capsid protein phrog_10 major head protein head and packaging 1 14092 15048
YP_009101279.1 NC_025444_p25 major tail subunit phrog_117 major tail protein tail 1 17037 17630
YP_009101262.1 NC_025444_p8 hypothetical protein phrog_356 minor tail protein tail 1 5246 5983
YP_009101317.1 NC_025444_p63 non-heme haloperoxidase phrog_789 esterase/lipase other -1 40793 41638
YP_009101287.1 NC_025444_p33 hypothetical protein phrog_726 unknown function unknown function 1 24752 25180
YP_009101276.1 NC_025444_p22 hypothetical protein phrog_320 head closure Hc1 connector 1 15880 16248
YP_009101284.1 NC_025444_p30 minor tail protein phrog_110 minor tail protein tail 1 22100 23872
YP_009101311.1 NC_025444_p57 RDF protein phrog_221 metallo-phosphoesterase other -1 38144 38914
YP_009101316.1 NC_025444_p62 EndoVII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 40244 40708
YP_009101292.1 NC_025444_p38 hypothetical protein phrog_6992 unknown function unknown function -1 28912 29082
YP_009101333.1 NC_025444_p79 hypothetical protein phrog_1875 unknown function unknown function -1 47118 47360
YP_009101340.1 NC_025444_p86 hypothetical protein phrog_9713 unknown function unknown function -1 49127 49195
YP_009101315.1 NC_025444_p61 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39773 40165
YP_009101337.1 NC_025444_p83 hypothetical protein phrog_421 unknown function unknown function -1 48014 48769
YP_009101321.1 NC_025444_p67 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 42322 43125
YP_009101300.1 NC_025444_p46 hypothetical protein phrog_18089 unknown function unknown function -1 32477 32680
YP_009101308.1 NC_025444_p54 hypothetical protein phrog_499 unknown function unknown function -1 37124 37315
YP_009101338.1 NC_025444_p84 hypothetical protein phrog_855 unknown function unknown function -1 48769 48903
YP_009101339.1 NC_025444_p85 hypothetical protein phrog_828 unknown function unknown function -1 48909 49130
YP_009101268.1 NC_025444_p14 terminase large subunit phrog_9 terminase large subunit head and packaging 1 9396 11156
YP_009101324.1 NC_025444_p70 hypothetical protein phrog_642 unknown function unknown function -1 43537 43761
YP_009101347.1 NC_025444_p93 hypothetical protein phrog_1392 unknown function unknown function -1 50899 51609
YP_009101343.1 NC_025444_p89 hypothetical protein phrog_519 unknown function unknown function -1 49988 50155
YP_009101313.1 NC_025444_p59 hypothetical protein phrog_2264 unknown function unknown function -1 39234 39311
YP_009101275.1 NC_025444_p21 hypothetical protein phrog_830 head-tail connector protein connector 1 15680 15880
YP_009101341.1 NC_025444_p87 hypothetical protein phrog_2355 unknown function unknown function -1 49192 49617
YP_009101271.1 NC_025444_p17 scaffold protein phrog_233 head scaffolding protein head and packaging 1 13548 14060
YP_009101296.1 NC_025444_p42 hypothetical protein phrog_3283 unknown function unknown function -1 29930 30160
YP_009101335.1 NC_025444_p81 hypothetical protein phrog_1477 unknown function unknown function -1 47584 47718
YP_009101327.1 NC_025444_p73 repressor phrog_357 transcriptional repressor transcription regulation -1 45170 45760
YP_009101330.1 NC_025444_p76 hypothetical protein phrog_4569 unknown function unknown function -1 46431 46706
YP_009101332.1 NC_025444_p78 hypothetical protein phrog_1178 unknown function unknown function -1 46849 47115
YP_009101322.1 NC_025444_p68 hypothetical protein phrog_2731 unknown function unknown function -1 43135 43272
YP_009101281.1 NC_025444_p27 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 17739 18143
YP_009101264.1 NC_025444_p10 hypothetical protein phrog_1087 unknown function unknown function 1 6350 6487
YP_009101301.1 NC_025444_p47 hypothetical protein phrog_23873 unknown function unknown function -1 32677 32886
YP_009101286.1 NC_025444_p32 hypothetical protein phrog_1298 minor tail protein tail 1 24334 24762
YP_009101288.1 NC_025444_p34 minor tail subunit phrog_737 minor tail protein tail 1 25191 26969
YP_009101263.1 NC_025444_p9 hypothetical protein phrog_2269 unknown function unknown function 1 5992 6207
YP_009101319.1 NC_025444_p65 hypothetical protein phrog_1123 unknown function unknown function -1 41769 42026
YP_009101298.1 NC_025444_p44 hypothetical protein phrog_896 unknown function unknown function -1 30432 30674