| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_025444 |
Definition |
Mycobacterium phage RedRock, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53332 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
95 |
%GC |
64.52 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009101302.1 | NC_025444_p48 | HTH, DNA binding | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32886 | 33308 |
| YP_009101328.1 | NC_025444_p74 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 45979 | 46134 |
| YP_009101345.1 | NC_025444_p91 | hypothetical protein | phrog_8476 | unknown function | unknown function | -1 | 50352 | 50642 |
| YP_009101257.1 | NC_025444_p3 | hypothetical protein | phrog_4491 | unknown function | unknown function | 1 | 1976 | 2281 |
| YP_009101260.1 | NC_025444_p6 | tail protein | phrog_1260 | minor tail protein | tail | 1 | 3171 | 4133 |
| YP_009101256.1 | NC_025444_p2 | VIP2 | phrog_3895 | ADP-ribosyltransferase exoenzyme toxin | moron, auxiliary metabolic gene and host takeover | 1 | 1386 | 1979 |
| YP_009101259.1 | NC_025444_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2614 | 3084 |
| YP_009101314.1 | NC_025444_p60 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39313 | 39741 |
| YP_009101336.1 | NC_025444_p82 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47718 | 48017 |
| YP_009101266.1 | NC_025444_p12 | hypothetical protein | phrog_526 | holin | lysis | 1 | 7965 | 8399 |
| YP_009101348.1 | NC_025444_p94 | hypothetical protein | phrog_1445 | unknown function | unknown function | -1 | 51635 | 51739 |
| YP_009101261.1 | NC_025444_p7 | hypothetical protein | phrog_819 | tail protein | tail | 1 | 4133 | 5242 |
| YP_009101344.1 | NC_025444_p90 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 50152 | 50352 |
| YP_009101291.1 | NC_025444_p37 | ParB | phrog_2639 | Arc-like repressor | transcription regulation | 1 | 28448 | 28717 |
| YP_009101289.1 | NC_025444_p35 | hypothetical protein | phrog_2570 | unknown function | unknown function | 1 | 27043 | 27231 |
| YP_009101331.1 | NC_025444_p77 | hypothetical protein | phrog_8490 | unknown function | unknown function | -1 | 46706 | 46852 |
| YP_009101277.1 | NC_025444_p23 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 16248 | 16583 |
| YP_009101334.1 | NC_025444_p80 | hypothetical protein | phrog_3351 | unknown function | unknown function | -1 | 47357 | 47584 |
| YP_009101283.1 | NC_025444_p29 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 21090 | 22103 |
| YP_009101273.1 | NC_025444_p19 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 15120 | 15302 |
| YP_009101270.1 | NC_025444_p16 | protease | phrog_193 | head maturation protease | head and packaging | 1 | 12742 | 13494 |
| YP_009101320.1 | NC_025444_p66 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 42023 | 42256 |
| YP_009101278.1 | NC_025444_p24 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 16593 | 17018 |
| YP_009101265.1 | NC_025444_p11 | LysA | phrog_317 | endolysin | lysis | 1 | 6487 | 7968 |
| YP_009101306.1 | NC_025444_p52 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 34861 | 36924 |
| YP_009101294.1 | NC_025444_p40 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 29237 | 29665 |
| YP_009101342.1 | NC_025444_p88 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 49638 | 49991 |
| YP_009101297.1 | NC_025444_p43 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 30142 | 30432 |
| YP_009101309.1 | NC_025444_p55 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 37312 | 37992 |
| YP_009101290.1 | NC_025444_p36 | ParA | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 27898 | 28455 |
| YP_009101269.1 | NC_025444_p15 | portal | phrog_104 | portal protein | head and packaging | 1 | 11153 | 12613 |
| YP_009101323.1 | NC_025444_p69 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43269 | 43508 |
| YP_009101346.1 | NC_025444_p92 | hypothetical protein | phrog_6255 | unknown function | unknown function | -1 | 50642 | 50890 |
| YP_009101267.1 | NC_025444_p13 | LysB | phrog_102 | endolysin | lysis | 1 | 8396 | 9373 |
| YP_009101282.1 | NC_025444_p28 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 18558 | 21056 |
| YP_009101299.1 | NC_025444_p45 | Pol1 | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 30682 | 32469 |
| YP_009101318.1 | NC_025444_p64 | hypothetical protein | phrog_13419 | unknown function | unknown function | -1 | 41626 | 41772 |
| YP_009101295.1 | NC_025444_p41 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 29643 | 29906 |
| YP_009101280.1 | NC_025444_p26 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 17739 | 18568 |
| YP_009101285.1 | NC_025444_p31 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23888 | 24337 |
| YP_009101293.1 | NC_025444_p39 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 29082 | 29240 |
| YP_009101274.1 | NC_025444_p20 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 15306 | 15683 |
| YP_009101307.1 | NC_025444_p53 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 36924 | 37127 |
| YP_009101325.1 | NC_025444_p71 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43811 | 44719 |
| YP_009101303.1 | NC_025444_p49 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 33305 | 33508 |
| YP_009101258.1 | NC_025444_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2278 | 2574 |
| YP_009101329.1 | NC_025444_p75 | hypothetical protein | phrog_4294 | unknown function | unknown function | -1 | 46273 | 46431 |
| YP_009101310.1 | NC_025444_p56 | hypothetical protein | phrog_2436 | unknown function | unknown function | -1 | 37989 | 38141 |
| YP_009101326.1 | NC_025444_p72 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44716 | 45123 |
| YP_009101305.1 | NC_025444_p51 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34322 | 34849 |
| YP_009101255.1 | NC_025444_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 370 | 1134 |
| YP_009101304.1 | NC_025444_p50 | ThyX | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 33512 | 34246 |
| YP_009101349.1 | NC_025444_p95 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 51743 | 52057 |
| YP_009101312.1 | NC_025444_p58 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 38911 | 39237 |
| YP_009101272.1 | NC_025444_p18 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 14092 | 15048 |
| YP_009101279.1 | NC_025444_p25 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 17037 | 17630 |
| YP_009101262.1 | NC_025444_p8 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 5246 | 5983 |
| YP_009101317.1 | NC_025444_p63 | non-heme haloperoxidase | phrog_789 | esterase/lipase | other | -1 | 40793 | 41638 |
| YP_009101287.1 | NC_025444_p33 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 24752 | 25180 |
| YP_009101276.1 | NC_025444_p22 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 15880 | 16248 |
| YP_009101284.1 | NC_025444_p30 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 22100 | 23872 |
| YP_009101311.1 | NC_025444_p57 | RDF protein | phrog_221 | metallo-phosphoesterase | other | -1 | 38144 | 38914 |
| YP_009101316.1 | NC_025444_p62 | EndoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40244 | 40708 |
| YP_009101292.1 | NC_025444_p38 | hypothetical protein | phrog_6992 | unknown function | unknown function | -1 | 28912 | 29082 |
| YP_009101333.1 | NC_025444_p79 | hypothetical protein | phrog_1875 | unknown function | unknown function | -1 | 47118 | 47360 |
| YP_009101340.1 | NC_025444_p86 | hypothetical protein | phrog_9713 | unknown function | unknown function | -1 | 49127 | 49195 |
| YP_009101315.1 | NC_025444_p61 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39773 | 40165 |
| YP_009101337.1 | NC_025444_p83 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 48014 | 48769 |
| YP_009101321.1 | NC_025444_p67 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42322 | 43125 |
| YP_009101300.1 | NC_025444_p46 | hypothetical protein | phrog_18089 | unknown function | unknown function | -1 | 32477 | 32680 |
| YP_009101308.1 | NC_025444_p54 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 37124 | 37315 |
| YP_009101338.1 | NC_025444_p84 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 48769 | 48903 |
| YP_009101339.1 | NC_025444_p85 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 48909 | 49130 |
| YP_009101268.1 | NC_025444_p14 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 9396 | 11156 |
| YP_009101324.1 | NC_025444_p70 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 43537 | 43761 |
| YP_009101347.1 | NC_025444_p93 | hypothetical protein | phrog_1392 | unknown function | unknown function | -1 | 50899 | 51609 |
| YP_009101343.1 | NC_025444_p89 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 49988 | 50155 |
| YP_009101313.1 | NC_025444_p59 | hypothetical protein | phrog_2264 | unknown function | unknown function | -1 | 39234 | 39311 |
| YP_009101275.1 | NC_025444_p21 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 15680 | 15880 |
| YP_009101341.1 | NC_025444_p87 | hypothetical protein | phrog_2355 | unknown function | unknown function | -1 | 49192 | 49617 |
| YP_009101271.1 | NC_025444_p17 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 13548 | 14060 |
| YP_009101296.1 | NC_025444_p42 | hypothetical protein | phrog_3283 | unknown function | unknown function | -1 | 29930 | 30160 |
| YP_009101335.1 | NC_025444_p81 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 47584 | 47718 |
| YP_009101327.1 | NC_025444_p73 | repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45170 | 45760 |
| YP_009101330.1 | NC_025444_p76 | hypothetical protein | phrog_4569 | unknown function | unknown function | -1 | 46431 | 46706 |
| YP_009101332.1 | NC_025444_p78 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 46849 | 47115 |
| YP_009101322.1 | NC_025444_p68 | hypothetical protein | phrog_2731 | unknown function | unknown function | -1 | 43135 | 43272 |
| YP_009101281.1 | NC_025444_p27 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 17739 | 18143 |
| YP_009101264.1 | NC_025444_p10 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 6350 | 6487 |
| YP_009101301.1 | NC_025444_p47 | hypothetical protein | phrog_23873 | unknown function | unknown function | -1 | 32677 | 32886 |
| YP_009101286.1 | NC_025444_p32 | hypothetical protein | phrog_1298 | minor tail protein | tail | 1 | 24334 | 24762 |
| YP_009101288.1 | NC_025444_p34 | minor tail subunit | phrog_737 | minor tail protein | tail | 1 | 25191 | 26969 |
| YP_009101263.1 | NC_025444_p9 | hypothetical protein | phrog_2269 | unknown function | unknown function | 1 | 5992 | 6207 |
| YP_009101319.1 | NC_025444_p65 | hypothetical protein | phrog_1123 | unknown function | unknown function | -1 | 41769 | 42026 |
| YP_009101298.1 | NC_025444_p44 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 30432 | 30674 |