| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_025445 |
Definition |
Enterobacteria phage J8-65, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Bonnellvirus; Escherichia virus J8-65. |
DB of origin |
REFSEQ |
Length |
40981 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
47 |
%GC |
55.68 |
Number of singletons |
13 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009101368.1 | NC_025445_p19 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 12133 | 13038 |
| YP_009101360.1 | NC_025445_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5664 | 5903 |
| YP_009101361.1 | NC_025445_p12 | hypothetical protein | phrog_28324 | unknown function | unknown function | 1 | 5897 | 6337 |
| YP_009101376.1 | NC_025445_p27 | hypothetical protein | phrog_6060 | anti-termination protein Q-like | transcription regulation | 1 | 16899 | 17165 |
| YP_009101391.1 | NC_025445_p42 | TerL | phrog_38 | terminase large subunit | head and packaging | 1 | 36656 | 38392 |
| YP_009101387.1 | NC_025445_p38 | internal head protein | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 28154 | 30850 |
| YP_009101369.1 | NC_025445_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13074 | 13271 |
| YP_009101389.1 | NC_025445_p40 | tailspike colanidase | phrog_6117 | colanic acid degradation | moron, auxiliary metabolic gene and host takeover | 1 | 33948 | 36332 |
| YP_009101366.1 | NC_025445_p17 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 8977 | 9660 |
| YP_009101390.1 | NC_025445_p41 | TerS | phrog_891 | terminase small subunit | head and packaging | 1 | 36342 | 36632 |
| YP_009101353.1 | NC_025445_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2989 | 3258 |
| YP_009101388.1 | NC_025445_p39 | internal head protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 30847 | 33948 |
| YP_009101374.1 | NC_025445_p25 | kinase-phosphatase | phrog_415 | polynucleotide kinase | other | 1 | 15808 | 16335 |
| YP_009101362.1 | NC_025445_p13 | DNA primase | phrog_8634 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 6334 | 7047 |
| YP_009101371.1 | NC_025445_p22 | endonuclease | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 14132 | 14512 |
| YP_009101357.1 | NC_025445_p8 | hypothetical protein | phrog_34944 | unknown function | unknown function | 1 | 4420 | 4716 |
| YP_009101373.1 | NC_025445_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15630 | 15857 |
| YP_009101365.1 | NC_025445_p16 | hypothetical protein | phrog_31596 | unknown function | unknown function | 1 | 8796 | 8987 |
| YP_009101355.1 | NC_025445_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3681 | 3932 |
| YP_009101358.1 | NC_025445_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4720 | 5235 |
| YP_009101381.1 | NC_025445_p32 | portal protein | phrog_449 | head-tail adaptor | connector | 1 | 20553 | 22115 |
| YP_009101384.1 | NC_025445_p35 | tail protein A | phrog_446 | tail protein | tail | 1 | 24423 | 24971 |
| YP_009101378.1 | NC_025445_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19688 | 19870 |
| YP_009101380.1 | NC_025445_p31 | structural protein | phrog_35536 | virion structural protein | head and packaging | 1 | 20289 | 20549 |
| YP_009101377.1 | NC_025445_p28 | rNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 17175 | 19604 |
| YP_009101364.1 | NC_025445_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8322 | 8675 |
| YP_009101395.1 | NC_025445_p46 | hypothetical protein | phrog_35530 | unknown function | unknown function | 1 | 39797 | 40114 |
| YP_009101393.1 | NC_025445_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39075 | 39260 |
| YP_009101372.1 | NC_025445_p23 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 14512 | 15633 |
| YP_009101383.1 | NC_025445_p34 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 23370 | 24362 |
| YP_009101392.1 | NC_025445_p43 | hypothetical protein | phrog_9732 | unknown function | unknown function | 1 | 38392 | 39063 |
| YP_009101379.1 | NC_025445_p30 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 19870 | 20289 |
| YP_009101367.1 | NC_025445_p18 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 9671 | 12136 |
| YP_009101375.1 | NC_025445_p26 | hypothetical protein | phrog_19680 | unknown function | unknown function | 1 | 16268 | 16924 |
| YP_009101356.1 | NC_025445_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4005 | 4418 |
| YP_009101385.1 | NC_025445_p36 | tail protein B | phrog_457 | tail protein | tail | 1 | 24971 | 27415 |
| YP_009101396.1 | NC_025445_p47 | endolysin | phrog_315 | endolysin | lysis | 1 | 40114 | 40650 |
| YP_009101394.1 | NC_025445_p45 | hypothetical protein | phrog_1804 | Rz-like spanin | lysis | 1 | 39271 | 39762 |
| YP_009101386.1 | NC_025445_p37 | internal head protein | phrog_4295 | internal virion protein | head and packaging | 1 | 27417 | 28151 |
| YP_009101352.1 | NC_025445_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2611 | 2922 |
| YP_009101363.1 | NC_025445_p14 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 7057 | 8322 |
| YP_009101359.1 | NC_025445_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5389 | 5631 |
| YP_009101370.1 | NC_025445_p21 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 13228 | 14205 |
| YP_009101351.1 | NC_025445_p2 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 2005 | 2532 |
| YP_009101350.1 | NC_025445_p1 | anti-restriction SAMase | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 1468 | 1857 |
| YP_009101382.1 | NC_025445_p33 | scaffolding protein | phrog_36307 | head scaffolding protein | head and packaging | 1 | 22126 | 23346 |
| YP_009101354.1 | NC_025445_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3329 | 3604 |