Genomic map of Lelliottia phage phD2B (NC_025450)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_025450
Definition
Lelliottia phage phD2B, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Molineuxvirinae; Tuodvirus; Lelliottia virus phD2B.
DB of origin
REFSEQ
Length
44366
Host Name
Lelliottia sp. GL2
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
51
Number of singletons
8
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009102777.1 NC_025450_p31 scaffolding protein phrog_1018 head scaffolding protein head and packaging 1 21900 22817
YP_009102764.1 NC_025450_p18 hypothetical protein phrog_5791 unknown function unknown function 1 14275 14493
YP_009102790.1 NC_025450_p44 hypothetical protein phrog_2725 acetyl-CoA acetyltransferase other 1 38977 39267
YP_009102758.1 NC_025450_p12 hypothetical protein phrog_6703 unknown function unknown function 1 9066 9815
YP_009102763.1 NC_025450_p17 hypothetical protein phrog_862 unknown function unknown function 1 13473 14273
YP_009102792.1 NC_025450_p46 M15 family peptidase phrog_894 endolysin lysis 1 39702 40052
YP_009102755.1 NC_025450_p9 hypothetical protein singleton unknown function unknown function 1 6390 6563
YP_009102769.1 NC_025450_p23 hypothetical protein phrog_221 metallo-phosphoesterase other 1 16985 17992
YP_009102789.1 NC_025450_p43 terminase large subunit-like protein phrog_15524 terminase large subunit head and packaging 1 38097 38783
YP_009102771.1 NC_025450_p25 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 18397 19350
YP_009102759.1 NC_025450_p13 hypothetical protein singleton unknown function unknown function 1 9815 10030
YP_009102788.1 NC_025450_p42 homing endonuclease phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism 1 37511 38059
YP_009102774.1 NC_025450_p28 hypothetical protein phrog_1249 acetyltransferase other 1 19673 20137
YP_009102770.1 NC_025450_p24 hypothetical protein phrog_2585 nucleotide kinase other 1 18068 18397
YP_009102786.1 NC_025450_p40 terminase small subunit phrog_891 terminase small subunit head and packaging 1 35842 36141
YP_009102787.1 NC_025450_p41 terminase large subunit phrog_17672 terminase large subunit head and packaging 1 36141 37337
YP_009102762.1 NC_025450_p16 hypothetical protein phrog_7450 polysaccharide chain length determinant protein moron, auxiliary metabolic gene and host takeover 1 13018 13395
YP_009102793.1 NC_025450_p47 hypothetical protein singleton unknown function unknown function 1 40052 40189
YP_009102766.1 NC_025450_p20 5'-3' exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 15141 16166
YP_009102750.1 NC_025450_p4 hypothetical protein phrog_6403 unknown function unknown function 1 1325 1543
YP_009102782.1 NC_025450_p36 lysozyme domain containing protein phrog_4290 lysozyme domain-containing protein lysis 1 27884 30832
YP_009102776.1 NC_025450_p30 head-tail connector protein phrog_449 head-tail adaptor connector 1 20377 21897
YP_009102747.1 NC_025450_p1 hypothetical protein singleton unknown function unknown function 1 164 394
YP_009102784.1 NC_025450_p38 tail fiber protein phrog_2710 tail fiber protein tail 1 34684 35664
YP_009102783.1 NC_025450_p37 internal virion protein phrog_342 internal virion protein with endolysin domain head and packaging 1 30899 34681
YP_009102794.1 NC_025450_p48 hypothetical protein singleton unknown function unknown function 1 40326 41975
YP_009102754.1 NC_025450_p8 DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 3489 6116
YP_009102791.1 NC_025450_p45 hypothetical protein phrog_2725 acetyl-CoA acetyltransferase other 1 39292 39573
YP_009102751.1 NC_025450_p5 S-adenosyl-L-methionine hydrolase phrog_2226 SAM-dependent methyltransferase other 1 1720 2136
YP_009102756.1 NC_025450_p10 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6605 7009
YP_009102775.1 NC_025450_p29 hypothetical protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 20147 20377
YP_009102781.1 NC_025450_p35 internal virion protein phrog_805 internal virion protein head and packaging 1 27305 27874
YP_009102778.1 NC_025450_p32 capsid protein phrog_267 major head protein head and packaging 1 22898 24133
YP_009102757.1 NC_025450_p11 DNA primase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 7006 8991
YP_009102760.1 NC_025450_p14 hypothetical protein phrog_5754 unknown function unknown function 1 10020 10220
YP_009102785.1 NC_025450_p39 holin phrog_920 holin lysis 1 35661 35855
YP_009102748.1 NC_025450_p2 hypothetical protein phrog_15633 unknown function unknown function 1 762 947
YP_009102773.1 NC_025450_p27 hypothetical protein phrog_6507 unknown function unknown function 1 19500 19676
YP_009102780.1 NC_025450_p34 tail tubular protein B phrog_457 tail protein tail 1 24910 27303
YP_009102768.1 NC_025450_p22 endonuclease phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 16580 16984
YP_009102753.1 NC_025450_p7 hypothetical protein phrog_4571 unknown function unknown function 1 2507 3412
YP_009102749.1 NC_025450_p3 hypothetical protein singleton unknown function unknown function 1 1053 1328
YP_009102772.1 NC_025450_p26 hypothetical protein phrog_5860 unknown function unknown function 1 19340 19531
YP_009102765.1 NC_025450_p19 hypothetical protein phrog_4429 unknown function unknown function 1 14606 14983
YP_009102779.1 NC_025450_p33 tail tubular protein A phrog_446 tail protein tail 1 24185 24910
YP_009102761.1 NC_025450_p15 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 10359 12878
YP_009102767.1 NC_025450_p21 homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 16153 16614
YP_009102752.1 NC_025450_p6 hypothetical protein singleton unknown function unknown function 1 2208 2327
YP_009102795.1 NC_025450_p49 hypothetical protein singleton unknown function unknown function 1 42030 43916