| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_025450 |
Definition |
Lelliottia phage phD2B, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Molineuxvirinae; Tuodvirus; Lelliottia virus phD2B. |
DB of origin |
REFSEQ |
Length |
44366 |
Host Name |
Lelliottia sp. GL2 |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
51 |
Number of singletons |
8 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009102777.1 | NC_025450_p31 | scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 21900 | 22817 |
| YP_009102764.1 | NC_025450_p18 | hypothetical protein | phrog_5791 | unknown function | unknown function | 1 | 14275 | 14493 |
| YP_009102790.1 | NC_025450_p44 | hypothetical protein | phrog_2725 | acetyl-CoA acetyltransferase | other | 1 | 38977 | 39267 |
| YP_009102758.1 | NC_025450_p12 | hypothetical protein | phrog_6703 | unknown function | unknown function | 1 | 9066 | 9815 |
| YP_009102763.1 | NC_025450_p17 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 13473 | 14273 |
| YP_009102792.1 | NC_025450_p46 | M15 family peptidase | phrog_894 | endolysin | lysis | 1 | 39702 | 40052 |
| YP_009102755.1 | NC_025450_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6390 | 6563 |
| YP_009102769.1 | NC_025450_p23 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | 1 | 16985 | 17992 |
| YP_009102789.1 | NC_025450_p43 | terminase large subunit-like protein | phrog_15524 | terminase large subunit | head and packaging | 1 | 38097 | 38783 |
| YP_009102771.1 | NC_025450_p25 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 18397 | 19350 |
| YP_009102759.1 | NC_025450_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9815 | 10030 |
| YP_009102788.1 | NC_025450_p42 | homing endonuclease | phrog_314 | homing endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37511 | 38059 |
| YP_009102774.1 | NC_025450_p28 | hypothetical protein | phrog_1249 | acetyltransferase | other | 1 | 19673 | 20137 |
| YP_009102770.1 | NC_025450_p24 | hypothetical protein | phrog_2585 | nucleotide kinase | other | 1 | 18068 | 18397 |
| YP_009102786.1 | NC_025450_p40 | terminase small subunit | phrog_891 | terminase small subunit | head and packaging | 1 | 35842 | 36141 |
| YP_009102787.1 | NC_025450_p41 | terminase large subunit | phrog_17672 | terminase large subunit | head and packaging | 1 | 36141 | 37337 |
| YP_009102762.1 | NC_025450_p16 | hypothetical protein | phrog_7450 | polysaccharide chain length determinant protein | moron, auxiliary metabolic gene and host takeover | 1 | 13018 | 13395 |
| YP_009102793.1 | NC_025450_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40052 | 40189 |
| YP_009102766.1 | NC_025450_p20 | 5'-3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15141 | 16166 |
| YP_009102750.1 | NC_025450_p4 | hypothetical protein | phrog_6403 | unknown function | unknown function | 1 | 1325 | 1543 |
| YP_009102782.1 | NC_025450_p36 | lysozyme domain containing protein | phrog_4290 | lysozyme domain-containing protein | lysis | 1 | 27884 | 30832 |
| YP_009102776.1 | NC_025450_p30 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 20377 | 21897 |
| YP_009102747.1 | NC_025450_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 164 | 394 |
| YP_009102784.1 | NC_025450_p38 | tail fiber protein | phrog_2710 | tail fiber protein | tail | 1 | 34684 | 35664 |
| YP_009102783.1 | NC_025450_p37 | internal virion protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 30899 | 34681 |
| YP_009102794.1 | NC_025450_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40326 | 41975 |
| YP_009102754.1 | NC_025450_p8 | DNA-directed RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3489 | 6116 |
| YP_009102791.1 | NC_025450_p45 | hypothetical protein | phrog_2725 | acetyl-CoA acetyltransferase | other | 1 | 39292 | 39573 |
| YP_009102751.1 | NC_025450_p5 | S-adenosyl-L-methionine hydrolase | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 1720 | 2136 |
| YP_009102756.1 | NC_025450_p10 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6605 | 7009 |
| YP_009102775.1 | NC_025450_p29 | hypothetical protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 20147 | 20377 |
| YP_009102781.1 | NC_025450_p35 | internal virion protein | phrog_805 | internal virion protein | head and packaging | 1 | 27305 | 27874 |
| YP_009102778.1 | NC_025450_p32 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 22898 | 24133 |
| YP_009102757.1 | NC_025450_p11 | DNA primase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 7006 | 8991 |
| YP_009102760.1 | NC_025450_p14 | hypothetical protein | phrog_5754 | unknown function | unknown function | 1 | 10020 | 10220 |
| YP_009102785.1 | NC_025450_p39 | holin | phrog_920 | holin | lysis | 1 | 35661 | 35855 |
| YP_009102748.1 | NC_025450_p2 | hypothetical protein | phrog_15633 | unknown function | unknown function | 1 | 762 | 947 |
| YP_009102773.1 | NC_025450_p27 | hypothetical protein | phrog_6507 | unknown function | unknown function | 1 | 19500 | 19676 |
| YP_009102780.1 | NC_025450_p34 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 24910 | 27303 |
| YP_009102768.1 | NC_025450_p22 | endonuclease | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 16580 | 16984 |
| YP_009102753.1 | NC_025450_p7 | hypothetical protein | phrog_4571 | unknown function | unknown function | 1 | 2507 | 3412 |
| YP_009102749.1 | NC_025450_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1053 | 1328 |
| YP_009102772.1 | NC_025450_p26 | hypothetical protein | phrog_5860 | unknown function | unknown function | 1 | 19340 | 19531 |
| YP_009102765.1 | NC_025450_p19 | hypothetical protein | phrog_4429 | unknown function | unknown function | 1 | 14606 | 14983 |
| YP_009102779.1 | NC_025450_p33 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 24185 | 24910 |
| YP_009102761.1 | NC_025450_p15 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 10359 | 12878 |
| YP_009102767.1 | NC_025450_p21 | homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 16153 | 16614 |
| YP_009102752.1 | NC_025450_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2208 | 2327 |
| YP_009102795.1 | NC_025450_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42030 | 43916 |