| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_025451 |
Definition |
Yersinia phage vB_YenP_AP5, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teetrevirus; Yersinia virus AP5. |
DB of origin |
REFSEQ |
Length |
38646 |
Host Name |
Yersinia enterocolitica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
45 |
%GC |
50.69 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009102809.1 | NC_025451_p14 | ssDNA binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 9281 | 9979 |
| YP_009102828.1 | NC_025451_p33 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 22270 | 22860 |
| YP_009102838.1 | NC_025451_p43 | phage lambda Rz-like lysis protein | phrog_1327 | Rz-like spanin | lysis | 1 | 35570 | 36022 |
| YP_009102834.1 | NC_025451_p39 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29016 | 32978 |
| YP_009102796.1 | NC_025451_p1 | S-adenosyl-L-methionine hydrolase | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 1017 | 1475 |
| YP_009102823.1 | NC_025451_p28 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 17879 | 18199 |
| YP_009102833.1 | NC_025451_p38 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 26754 | 28997 |
| YP_009102829.1 | NC_025451_p34 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 22876 | 25281 |
| YP_009102830.1 | NC_025451_p35 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 25354 | 25779 |
| YP_009102815.1 | NC_025451_p20 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13442 | 15556 |
| YP_009102825.1 | NC_025451_p30 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 19919 | 20851 |
| YP_009102820.1 | NC_025451_p25 | hypothetical protein | phrog_5008 | unknown function | unknown function | 1 | 17144 | 17257 |
| YP_009102804.1 | NC_025451_p9 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 6919 | 7965 |
| YP_009102803.1 | NC_025451_p8 | deoxyguanosine triphospho-hydrolase inhibitor | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 6549 | 6824 |
| YP_009102826.1 | NC_025451_p31 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 21008 | 22054 |
| YP_009102821.1 | NC_025451_p26 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 17401 | 17595 |
| YP_009102839.1 | NC_025451_p44 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 35997 | 37760 |
| YP_009102805.1 | NC_025451_p10 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 8135 | 8392 |
| YP_009102798.1 | NC_025451_p3 | hypothetical protein | phrog_10380 | unknown function | unknown function | 1 | 1938 | 2108 |
| YP_009102816.1 | NC_025451_p21 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 15573 | 15869 |
| YP_009102807.1 | NC_025451_p12 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 8858 | 8995 |
| YP_009102806.1 | NC_025451_p11 | hypothetical protein | phrog_4943 | unknown function | unknown function | 1 | 8392 | 8871 |
| YP_009102840.1 | NC_025451_p45 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 38005 | 38154 |
| YP_009102824.1 | NC_025451_p29 | head to tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 18210 | 19817 |
| YP_009102812.1 | NC_025451_p17 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11255 | 12769 |
| YP_009102810.1 | NC_025451_p15 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9979 | 10440 |
| YP_009102837.1 | NC_025451_p42 | DNA packaging protein A | phrog_1351 | terminase small subunit | head and packaging | 1 | 35215 | 35481 |
| YP_009102811.1 | NC_025451_p16 | lysin | phrog_822 | amidase | lysis | 1 | 10433 | 10888 |
| YP_009102836.1 | NC_025451_p41 | holin | phrog_920 | holin | lysis | 1 | 35008 | 35211 |
| YP_009102817.1 | NC_025451_p22 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 15866 | 16075 |
| YP_009102801.1 | NC_025451_p6 | hypothetical protein | phrog_6379 | unknown function | unknown function | 1 | 6044 | 6316 |
| YP_009102814.1 | NC_025451_p19 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 13090 | 13374 |
| YP_009102797.1 | NC_025451_p2 | hypothetical protein | phrog_2385 | unknown function | unknown function | 1 | 1748 | 1951 |
| YP_009102835.1 | NC_025451_p40 | tail fiber protein | phrog_9502 | tail fiber protein | tail | 1 | 33050 | 34996 |
| YP_009102799.1 | NC_025451_p4 | protein kinase | phrog_2828 | serine-threonine kinase | other | 1 | 2123 | 3232 |
| YP_009102802.1 | NC_025451_p7 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 6409 | 6549 |
| YP_009102822.1 | NC_025451_p27 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 17600 | 17851 |
| YP_009102831.1 | NC_025451_p36 | hypothetical protein | phrog_2633 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 25766 | 26155 |
| YP_009102808.1 | NC_025451_p13 | host RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 8992 | 9228 |
| YP_009102832.1 | NC_025451_p37 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 26158 | 26751 |
| YP_009102827.1 | NC_025451_p32 | minor capsid protein | phrog_20538 | head protein | head and packaging | 1 | 22066 | 22188 |
| YP_009102800.1 | NC_025451_p5 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3303 | 5957 |
| YP_009102818.1 | NC_025451_p23 | host recBCD nuclease inhibitor | phrog_4790 | host RecBCD nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 16072 | 16254 |
| YP_009102819.1 | NC_025451_p24 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16251 | 17162 |
| YP_009102813.1 | NC_025451_p18 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 12865 | 13077 |