| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_025463 |
Definition |
Shewanella sp. phage 1/44, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
49640 |
Host Name |
Shewanella |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
75 |
%GC |
39.82 |
Number of singletons |
44 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009103702.1 | NC_025463_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1675 | 2049 |
| YP_009103699.1 | NC_025463_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 610 | 1275 |
| YP_009103716.1 | NC_025463_p20 | transcriptional regulator | phrog_10566 | transcriptional regulator | transcription regulation | 1 | 6755 | 7024 |
| YP_009103723.1 | NC_025463_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 11867 | 11968 |
| YP_009103719.1 | NC_025463_p23 | portal protein | phrog_21 | portal protein | head and packaging | 1 | 9241 | 10737 |
| YP_009103720.1 | NC_025463_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10737 | 11219 |
| YP_009103724.1 | NC_025463_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 11949 | 12521 |
| YP_009103700.1 | NC_025463_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1278 | 1502 |
| YP_009103768.1 | NC_025463_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46354 | 46656 |
| YP_009103745.1 | NC_025463_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31687 | 31920 |
| YP_009103722.1 | NC_025463_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 11431 | 11811 |
| YP_009103712.1 | NC_025463_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5005 | 5916 |
| YP_009103751.1 | NC_025463_p55 | holliday junction resolvase | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37699 | 38118 |
| YP_009103706.1 | NC_025463_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2859 | 3125 |
| YP_009103757.1 | NC_025463_p61 | SGNH hydrolase | singleton | unknown function | unknown function | -1 | 41597 | 42862 |
| YP_009103744.1 | NC_025463_p48 | PolB elongation subunit | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29670 | 31694 |
| YP_009103698.1 | NC_025463_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 310 | 525 |
| YP_009103746.1 | NC_025463_p50 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 31923 | 33722 |
| YP_009103759.1 | NC_025463_p63 | NTP-PPase | phrog_671 | nucleotide pyrophosphohydrolase | other | -1 | 43290 | 43874 |
| YP_009103718.1 | NC_025463_p22 | head-tail connector | phrog_2545 | head-tail adaptor Ad1 | connector | 1 | 9029 | 9244 |
| YP_009103762.1 | NC_025463_p66 | hypothetical protein | phrog_38782 | unknown function | unknown function | -1 | 44274 | 44420 |
| YP_009103703.1 | NC_025463_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2052 | 2411 |
| YP_009103742.1 | NC_025463_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29131 | 29355 |
| YP_009103717.1 | NC_025463_p21 | terminase large subunit | phrog_15 | terminase large subunit | head and packaging | 1 | 7026 | 9032 |
| YP_009103761.1 | NC_025463_p65 | hypothetical protein | phrog_5443 | unknown function | unknown function | -1 | 44048 | 44272 |
| YP_009103713.1 | NC_025463_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5894 | 6154 |
| YP_009103743.1 | NC_025463_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29357 | 29629 |
| YP_009103704.1 | NC_025463_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2424 | 2612 |
| YP_009103760.1 | NC_025463_p64 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43874 | 44044 |
| YP_009103769.1 | NC_025463_p73 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46664 | 48130 |
| YP_009103737.1 | NC_025463_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25876 | 26184 |
| YP_009103734.1 | NC_025463_p38 | hypothetical protein | phrog_4408 | unknown function | unknown function | 1 | 22042 | 22419 |
| YP_009103697.1 | NC_025463_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1 | 114 |
| YP_009103758.1 | NC_025463_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42865 | 43230 |
| YP_009103747.1 | NC_025463_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33839 | 34852 |
| YP_009103739.1 | NC_025463_p43 | hypothetical protein | phrog_5076 | unknown function | unknown function | 1 | 28025 | 28237 |
| YP_009103736.1 | NC_025463_p40 | hypothetical protein | phrog_19312 | unknown function | unknown function | 1 | 24890 | 25879 |
| YP_009103709.1 | NC_025463_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3642 | 3737 |
| YP_009103729.1 | NC_025463_p33 | hypothetical protein | phrog_5185 | unknown function | unknown function | 1 | 16068 | 16511 |
| YP_009103726.1 | NC_025463_p30 | minor capsid protein | phrog_122 | head decoration | head and packaging | 1 | 14778 | 15116 |
| YP_009103766.1 | NC_025463_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45192 | 45578 |
| YP_009103707.1 | NC_025463_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3130 | 3435 |
| YP_009103711.1 | NC_025463_p15 | hypothetical protein | phrog_7702 | unknown function | unknown function | 1 | 4597 | 4992 |
| YP_009103725.1 | NC_025463_p29 | prohead protease and major capsid protein | phrog_4523 | major head and protease protein | head and packaging | 1 | 12654 | 14720 |
| YP_009103732.1 | NC_025463_p36 | major tail protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 16986 | 17765 |
| YP_009103771.1 | NC_025463_p75 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48416 | 49240 |
| YP_009103740.1 | NC_025463_p44 | hypothetical protein | phrog_3108 | unknown function | unknown function | 1 | 28239 | 28709 |
| YP_009103753.1 | NC_025463_p57 | DNA primase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 38392 | 40785 |
| YP_009103754.1 | NC_025463_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40813 | 41340 |
| YP_009103749.1 | NC_025463_p53 | hypothetical protein | phrog_16275 | unknown function | unknown function | 1 | 36087 | 36338 |
| YP_009103767.1 | NC_025463_p71 | ParB-like protein | phrog_1033 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 45575 | 46357 |
| YP_009103710.1 | NC_025463_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4385 | 4516 |
| YP_009103731.1 | NC_025463_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16822 | 16989 |
| YP_009103765.1 | NC_025463_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44809 | 45195 |
| YP_009103748.1 | NC_025463_p52 | PD-(D/E)XK nuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 34873 | 36081 |
| YP_009103721.1 | NC_025463_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11182 | 11385 |
| YP_009103714.1 | NC_025463_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6162 | 6317 |
| YP_009103733.1 | NC_025463_p37 | tape measure protein | phrog_23108 | tail length tape measure protein | tail | 1 | 17835 | 22040 |
| YP_009103764.1 | NC_025463_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44531 | 44809 |
| YP_009103728.1 | NC_025463_p32 | minor tail protein | phrog_27 | tail completion or Neck1 protein | connector | 1 | 15442 | 16071 |
| YP_009103708.1 | NC_025463_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3440 | 3640 |
| YP_009103741.1 | NC_025463_p45 | hypothetical protein | phrog_1158 | tail assembly chaperone | tail | 1 | 28706 | 29074 |
| YP_009103727.1 | NC_025463_p31 | hypothetical protein | phrog_27000 | unknown function | unknown function | 1 | 15116 | 15439 |
| YP_009103730.1 | NC_025463_p34 | co-chaperonin | phrog_3188 | co-chaperonin GroES | other | 1 | 16514 | 16819 |
| YP_009103770.1 | NC_025463_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48136 | 48501 |
| YP_009103701.1 | NC_025463_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1496 | 1672 |
| YP_009103756.1 | NC_025463_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41493 | 41588 |
| YP_009103750.1 | NC_025463_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36371 | 37699 |
| YP_009103755.1 | NC_025463_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41312 | 41467 |
| YP_009103738.1 | NC_025463_p42 | baseplate protein | phrog_6079 | tail protein | tail | 1 | 26181 | 28022 |
| YP_009103715.1 | NC_025463_p19 | terminase small subunit | phrog_57 | terminase small subunit | head and packaging | 1 | 6280 | 6762 |
| YP_009103763.1 | NC_025463_p67 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44430 | 44531 |
| YP_009103752.1 | NC_025463_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38118 | 38378 |
| YP_009103735.1 | NC_025463_p39 | hypothetical protein | phrog_9261 | unknown function | unknown function | 1 | 22427 | 24874 |
| YP_009103705.1 | NC_025463_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2612 | 2854 |