Genomic map of Shewanella sp. phage 1/44 (NC_025463)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_025463
Definition
Shewanella sp. phage 1/44, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
49640
Host Name
Shewanella
Host domain
Bacteria
Is prophage?
undef
Number of proteins
75
%GC
39.82
Number of singletons
44
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009103702.1 NC_025463_p6 hypothetical protein singleton unknown function unknown function 1 1675 2049
YP_009103699.1 NC_025463_p3 hypothetical protein singleton unknown function unknown function 1 610 1275
YP_009103716.1 NC_025463_p20 transcriptional regulator phrog_10566 transcriptional regulator transcription regulation 1 6755 7024
YP_009103723.1 NC_025463_p27 hypothetical protein singleton unknown function unknown function -1 11867 11968
YP_009103719.1 NC_025463_p23 portal protein phrog_21 portal protein head and packaging 1 9241 10737
YP_009103720.1 NC_025463_p24 hypothetical protein singleton unknown function unknown function 1 10737 11219
YP_009103724.1 NC_025463_p28 hypothetical protein singleton unknown function unknown function -1 11949 12521
YP_009103700.1 NC_025463_p4 hypothetical protein singleton unknown function unknown function 1 1278 1502
YP_009103768.1 NC_025463_p72 hypothetical protein singleton unknown function unknown function -1 46354 46656
YP_009103745.1 NC_025463_p49 hypothetical protein singleton unknown function unknown function -1 31687 31920
YP_009103722.1 NC_025463_p26 hypothetical protein singleton unknown function unknown function -1 11431 11811
YP_009103712.1 NC_025463_p16 hypothetical protein singleton unknown function unknown function 1 5005 5916
YP_009103751.1 NC_025463_p55 holliday junction resolvase phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 37699 38118
YP_009103706.1 NC_025463_p10 hypothetical protein singleton unknown function unknown function 1 2859 3125
YP_009103757.1 NC_025463_p61 SGNH hydrolase singleton unknown function unknown function -1 41597 42862
YP_009103744.1 NC_025463_p48 PolB elongation subunit phrog_1252 DNA polymerase DNA, RNA and nucleotide metabolism -1 29670 31694
YP_009103698.1 NC_025463_p2 hypothetical protein singleton unknown function unknown function 1 310 525
YP_009103746.1 NC_025463_p50 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 31923 33722
YP_009103759.1 NC_025463_p63 NTP-PPase phrog_671 nucleotide pyrophosphohydrolase other -1 43290 43874
YP_009103718.1 NC_025463_p22 head-tail connector phrog_2545 head-tail adaptor Ad1 connector 1 9029 9244
YP_009103762.1 NC_025463_p66 hypothetical protein phrog_38782 unknown function unknown function -1 44274 44420
YP_009103703.1 NC_025463_p7 hypothetical protein singleton unknown function unknown function 1 2052 2411
YP_009103742.1 NC_025463_p46 hypothetical protein singleton unknown function unknown function -1 29131 29355
YP_009103717.1 NC_025463_p21 terminase large subunit phrog_15 terminase large subunit head and packaging 1 7026 9032
YP_009103761.1 NC_025463_p65 hypothetical protein phrog_5443 unknown function unknown function -1 44048 44272
YP_009103713.1 NC_025463_p17 hypothetical protein singleton unknown function unknown function 1 5894 6154
YP_009103743.1 NC_025463_p47 hypothetical protein singleton unknown function unknown function -1 29357 29629
YP_009103704.1 NC_025463_p8 hypothetical protein singleton unknown function unknown function 1 2424 2612
YP_009103760.1 NC_025463_p64 hypothetical protein singleton unknown function unknown function -1 43874 44044
YP_009103769.1 NC_025463_p73 hypothetical protein singleton unknown function unknown function -1 46664 48130
YP_009103737.1 NC_025463_p41 hypothetical protein singleton unknown function unknown function 1 25876 26184
YP_009103734.1 NC_025463_p38 hypothetical protein phrog_4408 unknown function unknown function 1 22042 22419
YP_009103697.1 NC_025463_p1 hypothetical protein singleton unknown function unknown function 1 1 114
YP_009103758.1 NC_025463_p62 hypothetical protein singleton unknown function unknown function -1 42865 43230
YP_009103747.1 NC_025463_p51 hypothetical protein singleton unknown function unknown function 1 33839 34852
YP_009103739.1 NC_025463_p43 hypothetical protein phrog_5076 unknown function unknown function 1 28025 28237
YP_009103736.1 NC_025463_p40 hypothetical protein phrog_19312 unknown function unknown function 1 24890 25879
YP_009103709.1 NC_025463_p13 hypothetical protein singleton unknown function unknown function 1 3642 3737
YP_009103729.1 NC_025463_p33 hypothetical protein phrog_5185 unknown function unknown function 1 16068 16511
YP_009103726.1 NC_025463_p30 minor capsid protein phrog_122 head decoration head and packaging 1 14778 15116
YP_009103766.1 NC_025463_p70 hypothetical protein singleton unknown function unknown function -1 45192 45578
YP_009103707.1 NC_025463_p11 hypothetical protein singleton unknown function unknown function 1 3130 3435
YP_009103711.1 NC_025463_p15 hypothetical protein phrog_7702 unknown function unknown function 1 4597 4992
YP_009103725.1 NC_025463_p29 prohead protease and major capsid protein phrog_4523 major head and protease protein head and packaging 1 12654 14720
YP_009103732.1 NC_025463_p36 major tail protein phrog_807 major tail protein with Ig-like domain tail 1 16986 17765
YP_009103771.1 NC_025463_p75 hypothetical protein singleton unknown function unknown function -1 48416 49240
YP_009103740.1 NC_025463_p44 hypothetical protein phrog_3108 unknown function unknown function 1 28239 28709
YP_009103753.1 NC_025463_p57 DNA primase phrog_2478 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 38392 40785
YP_009103754.1 NC_025463_p58 hypothetical protein singleton unknown function unknown function -1 40813 41340
YP_009103749.1 NC_025463_p53 hypothetical protein phrog_16275 unknown function unknown function 1 36087 36338
YP_009103767.1 NC_025463_p71 ParB-like protein phrog_1033 ParB-like partition protein DNA, RNA and nucleotide metabolism -1 45575 46357
YP_009103710.1 NC_025463_p14 hypothetical protein singleton unknown function unknown function 1 4385 4516
YP_009103731.1 NC_025463_p35 hypothetical protein singleton unknown function unknown function 1 16822 16989
YP_009103765.1 NC_025463_p69 hypothetical protein singleton unknown function unknown function -1 44809 45195
YP_009103748.1 NC_025463_p52 PD-(D/E)XK nuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 34873 36081
YP_009103721.1 NC_025463_p25 hypothetical protein singleton unknown function unknown function 1 11182 11385
YP_009103714.1 NC_025463_p18 hypothetical protein singleton unknown function unknown function 1 6162 6317
YP_009103733.1 NC_025463_p37 tape measure protein phrog_23108 tail length tape measure protein tail 1 17835 22040
YP_009103764.1 NC_025463_p68 hypothetical protein singleton unknown function unknown function -1 44531 44809
YP_009103728.1 NC_025463_p32 minor tail protein phrog_27 tail completion or Neck1 protein connector 1 15442 16071
YP_009103708.1 NC_025463_p12 hypothetical protein singleton unknown function unknown function 1 3440 3640
YP_009103741.1 NC_025463_p45 hypothetical protein phrog_1158 tail assembly chaperone tail 1 28706 29074
YP_009103727.1 NC_025463_p31 hypothetical protein phrog_27000 unknown function unknown function 1 15116 15439
YP_009103730.1 NC_025463_p34 co-chaperonin phrog_3188 co-chaperonin GroES other 1 16514 16819
YP_009103770.1 NC_025463_p74 hypothetical protein singleton unknown function unknown function -1 48136 48501
YP_009103701.1 NC_025463_p5 hypothetical protein singleton unknown function unknown function 1 1496 1672
YP_009103756.1 NC_025463_p60 hypothetical protein singleton unknown function unknown function -1 41493 41588
YP_009103750.1 NC_025463_p54 hypothetical protein singleton unknown function unknown function 1 36371 37699
YP_009103755.1 NC_025463_p59 hypothetical protein singleton unknown function unknown function -1 41312 41467
YP_009103738.1 NC_025463_p42 baseplate protein phrog_6079 tail protein tail 1 26181 28022
YP_009103715.1 NC_025463_p19 terminase small subunit phrog_57 terminase small subunit head and packaging 1 6280 6762
YP_009103763.1 NC_025463_p67 hypothetical protein singleton unknown function unknown function -1 44430 44531
YP_009103752.1 NC_025463_p56 hypothetical protein singleton unknown function unknown function 1 38118 38378
YP_009103735.1 NC_025463_p39 hypothetical protein phrog_9261 unknown function unknown function 1 22427 24874
YP_009103705.1 NC_025463_p9 hypothetical protein singleton unknown function unknown function 1 2612 2854