| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_025824 |
Definition |
Enterobacteria phage fd strain 478, complete genome. |
Molecule type |
ss-DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Monodnaviria; Loebvirae; Hofneiviricota; Faserviricetes; Tubulavirales; Inoviridae; Inovirus; unclassified Inovirus. |
DB of origin |
REFSEQ |
Length |
6408 |
Host Name |
Enterobacteriaceae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
10 |
%GC |
40.88 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009111297.1 | NC_025824_p1 | rf replication | phrog_702 | replication protein | DNA, RNA and nucleotide metabolism | 1 | 1 | 831 |
| YP_009111297.1 | NC_025824_p1 | rf replication | phrog_702 | replication protein | DNA, RNA and nucleotide metabolism | 1 | 6007 | 6408 |
| YP_009111300.1 | NC_025824_p4 | hypothetical protein | phrog_7781 | minor coat protein | head and packaging | 1 | 1108 | 1209 |
| YP_009111303.1 | NC_025824_p7 | adsorption protein | phrog_8482 | attachment protein | head and packaging | 1 | 1579 | 2853 |
| YP_009111306.1 | NC_025824_p10 | hypothetical protein | phrog_1012 | assembly (protein IV of M13) | head and packaging | 1 | 4221 | 5501 |
| YP_009111298.1 | NC_025824_p2 | hypothetical protein | phrog_8855 | replication protein | DNA, RNA and nucleotide metabolism | 1 | 496 | 831 |
| YP_009111299.1 | NC_025824_p3 | single-stranded binding protein | phrog_1199 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 843 | 1106 |
| YP_009111305.1 | NC_025824_p9 | hypothetical protein | phrog_1675 | morphogenesis (protein I of M13) | head and packaging | 1 | 3197 | 4243 |
| YP_009111302.1 | NC_025824_p6 | major coat protein | phrog_1646 | major coat protein | head and packaging | 1 | 1301 | 1522 |
| YP_009111304.1 | NC_025824_p8 | hypothetical protein | phrog_1944 | minor head protein | head and packaging | 1 | 2856 | 3194 |
| YP_009111301.1 | NC_025824_p5 | minor coat protein | phrog_10143 | minor coat protein | head and packaging | 1 | 1206 | 1304 |