Genomic map of Shigella phage pSf-2 (NC_026010)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_026010
Definition
Shigella phage pSf-2, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tunavirinae; Tunavirus.
DB of origin
REFSEQ
Length
50109
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
83
%GC
45.44
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009112980.1 NC_026010_p43 protein of an unannotated phage phrog_38 terminase large subunit head and packaging -1 33066 34634
YP_009112969.1 NC_026010_p32 protein of an unannotated phage phrog_179 tail terminator connector -1 25505 25903
YP_009112991.1 NC_026010_p54 protein of an unannotated phage phrog_29229 unknown function unknown function -1 38273 38476
YP_009112994.1 NC_026010_p57 protein of an unannotated phage phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism -1 39536 39823
YP_009112961.1 NC_026010_p24 protein of an unannotated phage phrog_32 tail assembly protein tail -1 18630 19229
YP_009113014.1 NC_026010_p77 protein of an unannotated phage phrog_11577 unknown function unknown function 1 46612 46983
YP_009112971.1 NC_026010_p34 protein of an unannotated phage phrog_161 head closure Hc1 connector -1 26329 26700
YP_009112983.1 NC_026010_p46 protein of an unannotated phage phrog_2919 unknown function unknown function -1 35511 35696
YP_009112956.1 NC_026010_p19 protein of an unannotated phage phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 11574 12221
YP_009112947.1 NC_026010_p10 protein of an unannotated phage phrog_2180 unknown function unknown function -1 3916 4125
YP_009112942.1 NC_026010_p5 protein of an unannotated phage phrog_2877 holin lysis -1 1627 1842
YP_009112973.1 NC_026010_p36 protein of an unannotated phage phrog_2716 unknown function unknown function -1 27156 27443
YP_009112978.1 NC_026010_p41 protein of an unannotated phage phrog_324 head morphogenesis head and packaging -1 30977 31738
YP_009112968.1 NC_026010_p31 protein of an unannotated phage phrog_584 major tail protein tail -1 24835 25503
YP_009112970.1 NC_026010_p33 protein of an unannotated phage phrog_169 tail completion or Neck1 protein connector -1 25893 26336
YP_009112964.1 NC_026010_p27 protein of an unannotated phage phrog_14 minor tail protein tail -1 20819 21172
YP_009112953.1 NC_026010_p16 protein of an unannotated phage phrog_510 DNA primase DNA, RNA and nucleotide metabolism 1 8260 9195
YP_009112996.1 NC_026010_p59 protein of an unannotated phage phrog_5579 unknown function unknown function -1 40094 40243
YP_009113017.1 NC_026010_p80 protein of an unannotated phage phrog_3955 unknown function unknown function 1 47510 47653
YP_009112939.1 NC_026010_p2 protein of an unannotated phage phrog_2794 unknown function unknown function 1 209 616
YP_009112997.1 NC_026010_p60 protein of an unannotated phage phrog_7116 unknown function unknown function -1 40243 40749
YP_009113004.1 NC_026010_p67 protein of an unannotated phage phrog_12951 unknown function unknown function -1 42401 42871
YP_009112951.1 NC_026010_p14 protein of an unannotated phage phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 5634 7652
YP_009113005.1 NC_026010_p68 protein of an unannotated phage phrog_7421 unknown function unknown function -1 42874 43068
YP_009112995.1 NC_026010_p58 protein of an unannotated phage phrog_18601 unknown function unknown function -1 39807 40013
YP_009112977.1 NC_026010_p40 protein of an unannotated phage phrog_530 head maturation protease head and packaging -1 29862 30974
YP_009113020.1 NC_026010_p83 protein of an unannotated phage phrog_2684 unknown function unknown function 1 48252 48668
YP_009113010.1 NC_026010_p73 protein of an unannotated phage phrog_7717 unknown function unknown function 1 45580 45765
YP_009113000.1 NC_026010_p63 protein of an unannotated phage phrog_8628 unknown function unknown function -1 41582 41755
YP_009112993.1 NC_026010_p56 protein of an unannotated phage phrog_10580 unknown function unknown function -1 38901 39539
YP_009112967.1 NC_026010_p30 protein of an unannotated phage phrog_569 tail length tape measure protein tail -1 24404 24721
YP_009112943.1 NC_026010_p6 protein of an unannotated phage phrog_4788 unknown function unknown function -1 1980 2138
YP_009112957.1 NC_026010_p20 protein of an unannotated phage phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism -1 12296 13360
YP_009112954.1 NC_026010_p17 protein of an unannotated phage phrog_1980 tail fiber protein tail 1 9296 11080
YP_009113007.1 NC_026010_p70 protein of an unannotated phage phrog_11083 unknown function unknown function -1 43474 43989
YP_009112976.1 NC_026010_p39 protein of an unannotated phage phrog_1989 unknown function unknown function -1 29374 29850
YP_009113002.1 NC_026010_p65 protein of an unannotated phage phrog_6080 unknown function unknown function -1 41859 42086
YP_009112965.1 NC_026010_p28 protein of an unannotated phage phrog_24 tail length tape measure protein tail -1 21240 24047
YP_009113019.1 NC_026010_p82 protein of an unannotated phage phrog_9085 unknown function unknown function 1 47959 48171
YP_009112982.1 NC_026010_p45 protein of an unannotated phage phrog_5976 unknown function unknown function -1 35282 35509
YP_009112940.1 NC_026010_p3 protein of an unannotated phage phrog_1804 Rz-like spanin lysis -1 738 1139
YP_009112979.1 NC_026010_p42 protein of an unannotated phage phrog_146 portal protein head and packaging -1 31728 33011
YP_009112989.1 NC_026010_p52 protein of an unannotated phage phrog_139 deoxynucleoside monophosphate kinase other -1 37059 37631
YP_009112988.1 NC_026010_p51 protein of an unannotated phage phrog_10456 unknown function unknown function -1 36777 36986
YP_009112990.1 NC_026010_p53 protein of an unannotated phage phrog_415 polynucleotide kinase other -1 37740 38273
YP_009112985.1 NC_026010_p48 protein of an unannotated phage phrog_4927 unknown function unknown function -1 36003 36206
YP_009112984.1 NC_026010_p47 protein of an unannotated phage phrog_6666 unknown function unknown function -1 35677 35838
YP_009112941.1 NC_026010_p4 protein of an unannotated phage phrog_7 endolysin lysis -1 1139 1627
YP_009112950.1 NC_026010_p13 protein of an unannotated phage phrog_824 unknown function unknown function -1 5221 5637
YP_009112972.1 NC_026010_p35 protein of an unannotated phage phrog_302 virion structural protein head and packaging -1 26700 27110
YP_009113015.1 NC_026010_p78 protein of an unannotated phage phrog_6503 unknown function unknown function 1 46976 47176
YP_009113008.1 NC_026010_p71 protein of an unannotated phage singleton unknown function unknown function 1 44675 44818
YP_009113011.1 NC_026010_p74 protein of an unannotated phage phrog_3623 unknown function unknown function 1 45781 45966
YP_009112958.1 NC_026010_p21 protein of an unannotated phage phrog_4281 unknown function unknown function 1 13887 14117
YP_009112948.1 NC_026010_p11 protein of an unannotated phage phrog_2676 unknown function unknown function -1 4192 4440
YP_009113016.1 NC_026010_p79 protein of an unannotated phage phrog_10555 unknown function unknown function 1 47193 47513
YP_009112999.1 NC_026010_p62 protein of an unannotated phage phrog_11551 unknown function unknown function -1 41381 41572
YP_009112946.1 NC_026010_p9 protein of an unannotated phage phrog_2817 unknown function unknown function -1 3666 3938
YP_009112952.1 NC_026010_p15 protein of an unannotated phage phrog_2856 transcriptional regulator transcription regulation 1 7746 8198
YP_009112992.1 NC_026010_p55 protein of an unannotated phage phrog_11330 unknown function unknown function -1 38534 38752
YP_009112955.1 NC_026010_p18 protein of an unannotated phage phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 11111 11527
YP_009113021.1 NC_026010_p1 protein of an unannotated phage phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism 1 1 204
YP_009113021.1 NC_026010_p1 protein of an unannotated phage phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism 1 48745 50109
YP_009112975.1 NC_026010_p38 protein of an unannotated phage phrog_1989 unknown function unknown function -1 28545 29312
YP_009112944.1 NC_026010_p7 protein of an unannotated phage phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 2204 3355
YP_009113006.1 NC_026010_p69 protein of an unannotated phage phrog_18675 unknown function unknown function -1 43141 43461
YP_009112959.1 NC_026010_p22 protein of an unannotated phage phrog_1265 membrane protein moron, auxiliary metabolic gene and host takeover 1 14120 15076
YP_009113013.1 NC_026010_p76 protein of an unannotated phage phrog_13365 unknown function unknown function 1 46377 46607
YP_009113012.1 NC_026010_p75 protein of an unannotated phage phrog_20168 unknown function unknown function 1 45986 46231
YP_009113009.1 NC_026010_p72 protein of an unannotated phage phrog_757 DNA methyltransferase other 1 44815 45519
YP_009113001.1 NC_026010_p64 protein of an unannotated phage phrog_25570 unknown function unknown function -1 41752 41862
YP_009112998.1 NC_026010_p61 protein of an unannotated phage phrog_9595 unknown function unknown function -1 40821 41309
YP_009112966.1 NC_026010_p29 protein of an unannotated phage phrog_680 tail length tape measure protein tail -1 24087 24356
YP_009113003.1 NC_026010_p66 protein of an unannotated phage phrog_11449 unknown function unknown function -1 42092 42322
YP_009112960.1 NC_026010_p23 protein of an unannotated phage phrog_31 central tail fiber J tail -1 15103 18552
YP_009112987.1 NC_026010_p50 protein of an unannotated phage phrog_9709 unknown function unknown function -1 36436 36780
YP_009112981.1 NC_026010_p44 protein of an unannotated phage phrog_606 terminase small subunit head and packaging -1 34673 35197
YP_009112986.1 NC_026010_p49 protein of an unannotated phage phrog_303 unknown function unknown function -1 36206 36436
YP_009112949.1 NC_026010_p12 protein of an unannotated phage phrog_111 DNA methyltransferase other -1 4440 5153
YP_009112945.1 NC_026010_p8 protein of an unannotated phage phrog_38834 unknown function unknown function -1 3434 3598
YP_009112962.1 NC_026010_p25 protein of an unannotated phage phrog_30 minor tail protein tail -1 19226 19960
YP_009112963.1 NC_026010_p26 protein of an unannotated phage phrog_18 minor tail protein tail -1 19957 20739
YP_009113018.1 NC_026010_p81 protein of an unannotated phage phrog_4344 unknown function unknown function 1 47731 47955
YP_009112974.1 NC_026010_p37 protein of an unannotated phage phrog_264 major head protein head and packaging -1 27494 28453