| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_026010 |
Definition |
Shigella phage pSf-2, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tunavirinae; Tunavirus. |
DB of origin |
REFSEQ |
Length |
50109 |
Host Name |
Shigella flexneri |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
83 |
%GC |
45.44 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009112980.1 | NC_026010_p43 | protein of an unannotated phage | phrog_38 | terminase large subunit | head and packaging | -1 | 33066 | 34634 |
| YP_009112969.1 | NC_026010_p32 | protein of an unannotated phage | phrog_179 | tail terminator | connector | -1 | 25505 | 25903 |
| YP_009112991.1 | NC_026010_p54 | protein of an unannotated phage | phrog_29229 | unknown function | unknown function | -1 | 38273 | 38476 |
| YP_009112994.1 | NC_026010_p57 | protein of an unannotated phage | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | -1 | 39536 | 39823 |
| YP_009112961.1 | NC_026010_p24 | protein of an unannotated phage | phrog_32 | tail assembly protein | tail | -1 | 18630 | 19229 |
| YP_009113014.1 | NC_026010_p77 | protein of an unannotated phage | phrog_11577 | unknown function | unknown function | 1 | 46612 | 46983 |
| YP_009112971.1 | NC_026010_p34 | protein of an unannotated phage | phrog_161 | head closure Hc1 | connector | -1 | 26329 | 26700 |
| YP_009112983.1 | NC_026010_p46 | protein of an unannotated phage | phrog_2919 | unknown function | unknown function | -1 | 35511 | 35696 |
| YP_009112956.1 | NC_026010_p19 | protein of an unannotated phage | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 11574 | 12221 |
| YP_009112947.1 | NC_026010_p10 | protein of an unannotated phage | phrog_2180 | unknown function | unknown function | -1 | 3916 | 4125 |
| YP_009112942.1 | NC_026010_p5 | protein of an unannotated phage | phrog_2877 | holin | lysis | -1 | 1627 | 1842 |
| YP_009112973.1 | NC_026010_p36 | protein of an unannotated phage | phrog_2716 | unknown function | unknown function | -1 | 27156 | 27443 |
| YP_009112978.1 | NC_026010_p41 | protein of an unannotated phage | phrog_324 | head morphogenesis | head and packaging | -1 | 30977 | 31738 |
| YP_009112968.1 | NC_026010_p31 | protein of an unannotated phage | phrog_584 | major tail protein | tail | -1 | 24835 | 25503 |
| YP_009112970.1 | NC_026010_p33 | protein of an unannotated phage | phrog_169 | tail completion or Neck1 protein | connector | -1 | 25893 | 26336 |
| YP_009112964.1 | NC_026010_p27 | protein of an unannotated phage | phrog_14 | minor tail protein | tail | -1 | 20819 | 21172 |
| YP_009112953.1 | NC_026010_p16 | protein of an unannotated phage | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 8260 | 9195 |
| YP_009112996.1 | NC_026010_p59 | protein of an unannotated phage | phrog_5579 | unknown function | unknown function | -1 | 40094 | 40243 |
| YP_009113017.1 | NC_026010_p80 | protein of an unannotated phage | phrog_3955 | unknown function | unknown function | 1 | 47510 | 47653 |
| YP_009112939.1 | NC_026010_p2 | protein of an unannotated phage | phrog_2794 | unknown function | unknown function | 1 | 209 | 616 |
| YP_009112997.1 | NC_026010_p60 | protein of an unannotated phage | phrog_7116 | unknown function | unknown function | -1 | 40243 | 40749 |
| YP_009113004.1 | NC_026010_p67 | protein of an unannotated phage | phrog_12951 | unknown function | unknown function | -1 | 42401 | 42871 |
| YP_009112951.1 | NC_026010_p14 | protein of an unannotated phage | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 5634 | 7652 |
| YP_009113005.1 | NC_026010_p68 | protein of an unannotated phage | phrog_7421 | unknown function | unknown function | -1 | 42874 | 43068 |
| YP_009112995.1 | NC_026010_p58 | protein of an unannotated phage | phrog_18601 | unknown function | unknown function | -1 | 39807 | 40013 |
| YP_009112977.1 | NC_026010_p40 | protein of an unannotated phage | phrog_530 | head maturation protease | head and packaging | -1 | 29862 | 30974 |
| YP_009113020.1 | NC_026010_p83 | protein of an unannotated phage | phrog_2684 | unknown function | unknown function | 1 | 48252 | 48668 |
| YP_009113010.1 | NC_026010_p73 | protein of an unannotated phage | phrog_7717 | unknown function | unknown function | 1 | 45580 | 45765 |
| YP_009113000.1 | NC_026010_p63 | protein of an unannotated phage | phrog_8628 | unknown function | unknown function | -1 | 41582 | 41755 |
| YP_009112993.1 | NC_026010_p56 | protein of an unannotated phage | phrog_10580 | unknown function | unknown function | -1 | 38901 | 39539 |
| YP_009112967.1 | NC_026010_p30 | protein of an unannotated phage | phrog_569 | tail length tape measure protein | tail | -1 | 24404 | 24721 |
| YP_009112943.1 | NC_026010_p6 | protein of an unannotated phage | phrog_4788 | unknown function | unknown function | -1 | 1980 | 2138 |
| YP_009112957.1 | NC_026010_p20 | protein of an unannotated phage | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | -1 | 12296 | 13360 |
| YP_009112954.1 | NC_026010_p17 | protein of an unannotated phage | phrog_1980 | tail fiber protein | tail | 1 | 9296 | 11080 |
| YP_009113007.1 | NC_026010_p70 | protein of an unannotated phage | phrog_11083 | unknown function | unknown function | -1 | 43474 | 43989 |
| YP_009112976.1 | NC_026010_p39 | protein of an unannotated phage | phrog_1989 | unknown function | unknown function | -1 | 29374 | 29850 |
| YP_009113002.1 | NC_026010_p65 | protein of an unannotated phage | phrog_6080 | unknown function | unknown function | -1 | 41859 | 42086 |
| YP_009112965.1 | NC_026010_p28 | protein of an unannotated phage | phrog_24 | tail length tape measure protein | tail | -1 | 21240 | 24047 |
| YP_009113019.1 | NC_026010_p82 | protein of an unannotated phage | phrog_9085 | unknown function | unknown function | 1 | 47959 | 48171 |
| YP_009112982.1 | NC_026010_p45 | protein of an unannotated phage | phrog_5976 | unknown function | unknown function | -1 | 35282 | 35509 |
| YP_009112940.1 | NC_026010_p3 | protein of an unannotated phage | phrog_1804 | Rz-like spanin | lysis | -1 | 738 | 1139 |
| YP_009112979.1 | NC_026010_p42 | protein of an unannotated phage | phrog_146 | portal protein | head and packaging | -1 | 31728 | 33011 |
| YP_009112989.1 | NC_026010_p52 | protein of an unannotated phage | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 37059 | 37631 |
| YP_009112988.1 | NC_026010_p51 | protein of an unannotated phage | phrog_10456 | unknown function | unknown function | -1 | 36777 | 36986 |
| YP_009112990.1 | NC_026010_p53 | protein of an unannotated phage | phrog_415 | polynucleotide kinase | other | -1 | 37740 | 38273 |
| YP_009112985.1 | NC_026010_p48 | protein of an unannotated phage | phrog_4927 | unknown function | unknown function | -1 | 36003 | 36206 |
| YP_009112984.1 | NC_026010_p47 | protein of an unannotated phage | phrog_6666 | unknown function | unknown function | -1 | 35677 | 35838 |
| YP_009112941.1 | NC_026010_p4 | protein of an unannotated phage | phrog_7 | endolysin | lysis | -1 | 1139 | 1627 |
| YP_009112950.1 | NC_026010_p13 | protein of an unannotated phage | phrog_824 | unknown function | unknown function | -1 | 5221 | 5637 |
| YP_009112972.1 | NC_026010_p35 | protein of an unannotated phage | phrog_302 | virion structural protein | head and packaging | -1 | 26700 | 27110 |
| YP_009113015.1 | NC_026010_p78 | protein of an unannotated phage | phrog_6503 | unknown function | unknown function | 1 | 46976 | 47176 |
| YP_009113008.1 | NC_026010_p71 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 44675 | 44818 |
| YP_009113011.1 | NC_026010_p74 | protein of an unannotated phage | phrog_3623 | unknown function | unknown function | 1 | 45781 | 45966 |
| YP_009112958.1 | NC_026010_p21 | protein of an unannotated phage | phrog_4281 | unknown function | unknown function | 1 | 13887 | 14117 |
| YP_009112948.1 | NC_026010_p11 | protein of an unannotated phage | phrog_2676 | unknown function | unknown function | -1 | 4192 | 4440 |
| YP_009113016.1 | NC_026010_p79 | protein of an unannotated phage | phrog_10555 | unknown function | unknown function | 1 | 47193 | 47513 |
| YP_009112999.1 | NC_026010_p62 | protein of an unannotated phage | phrog_11551 | unknown function | unknown function | -1 | 41381 | 41572 |
| YP_009112946.1 | NC_026010_p9 | protein of an unannotated phage | phrog_2817 | unknown function | unknown function | -1 | 3666 | 3938 |
| YP_009112952.1 | NC_026010_p15 | protein of an unannotated phage | phrog_2856 | transcriptional regulator | transcription regulation | 1 | 7746 | 8198 |
| YP_009112992.1 | NC_026010_p55 | protein of an unannotated phage | phrog_11330 | unknown function | unknown function | -1 | 38534 | 38752 |
| YP_009112955.1 | NC_026010_p18 | protein of an unannotated phage | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 11111 | 11527 |
| YP_009113021.1 | NC_026010_p1 | protein of an unannotated phage | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 1 | 204 |
| YP_009113021.1 | NC_026010_p1 | protein of an unannotated phage | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 48745 | 50109 |
| YP_009112975.1 | NC_026010_p38 | protein of an unannotated phage | phrog_1989 | unknown function | unknown function | -1 | 28545 | 29312 |
| YP_009112944.1 | NC_026010_p7 | protein of an unannotated phage | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 2204 | 3355 |
| YP_009113006.1 | NC_026010_p69 | protein of an unannotated phage | phrog_18675 | unknown function | unknown function | -1 | 43141 | 43461 |
| YP_009112959.1 | NC_026010_p22 | protein of an unannotated phage | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 14120 | 15076 |
| YP_009113013.1 | NC_026010_p76 | protein of an unannotated phage | phrog_13365 | unknown function | unknown function | 1 | 46377 | 46607 |
| YP_009113012.1 | NC_026010_p75 | protein of an unannotated phage | phrog_20168 | unknown function | unknown function | 1 | 45986 | 46231 |
| YP_009113009.1 | NC_026010_p72 | protein of an unannotated phage | phrog_757 | DNA methyltransferase | other | 1 | 44815 | 45519 |
| YP_009113001.1 | NC_026010_p64 | protein of an unannotated phage | phrog_25570 | unknown function | unknown function | -1 | 41752 | 41862 |
| YP_009112998.1 | NC_026010_p61 | protein of an unannotated phage | phrog_9595 | unknown function | unknown function | -1 | 40821 | 41309 |
| YP_009112966.1 | NC_026010_p29 | protein of an unannotated phage | phrog_680 | tail length tape measure protein | tail | -1 | 24087 | 24356 |
| YP_009113003.1 | NC_026010_p66 | protein of an unannotated phage | phrog_11449 | unknown function | unknown function | -1 | 42092 | 42322 |
| YP_009112960.1 | NC_026010_p23 | protein of an unannotated phage | phrog_31 | central tail fiber J | tail | -1 | 15103 | 18552 |
| YP_009112987.1 | NC_026010_p50 | protein of an unannotated phage | phrog_9709 | unknown function | unknown function | -1 | 36436 | 36780 |
| YP_009112981.1 | NC_026010_p44 | protein of an unannotated phage | phrog_606 | terminase small subunit | head and packaging | -1 | 34673 | 35197 |
| YP_009112986.1 | NC_026010_p49 | protein of an unannotated phage | phrog_303 | unknown function | unknown function | -1 | 36206 | 36436 |
| YP_009112949.1 | NC_026010_p12 | protein of an unannotated phage | phrog_111 | DNA methyltransferase | other | -1 | 4440 | 5153 |
| YP_009112945.1 | NC_026010_p8 | protein of an unannotated phage | phrog_38834 | unknown function | unknown function | -1 | 3434 | 3598 |
| YP_009112962.1 | NC_026010_p25 | protein of an unannotated phage | phrog_30 | minor tail protein | tail | -1 | 19226 | 19960 |
| YP_009112963.1 | NC_026010_p26 | protein of an unannotated phage | phrog_18 | minor tail protein | tail | -1 | 19957 | 20739 |
| YP_009113018.1 | NC_026010_p81 | protein of an unannotated phage | phrog_4344 | unknown function | unknown function | 1 | 47731 | 47955 |
| YP_009112974.1 | NC_026010_p37 | protein of an unannotated phage | phrog_264 | major head protein | head and packaging | -1 | 27494 | 28453 |