| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_026017 |
Definition |
Salmonella phage LSPA1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus. |
DB of origin |
REFSEQ |
Length |
41880 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
50.48 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009113177.1 | NC_026017_p30 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 20716 | 21081 |
| YP_009113168.1 | NC_026017_p21 | hypothetical protein | singleton | unknown function | unknown function | -1 | 14491 | 14715 |
| YP_009113191.1 | NC_026017_p44 | hypothetical protein | phrog_3127 | unknown function | unknown function | -1 | 34252 | 34722 |
| YP_009113180.1 | NC_026017_p33 | hypothetical protein | phrog_5915 | unknown function | unknown function | -1 | 25758 | 25919 |
| YP_009113197.1 | NC_026017_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38901 | 39089 |
| YP_009113150.1 | NC_026017_p3 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 1436 | 2662 |
| YP_009113205.1 | NC_026017_p58 | hypothetical protein | phrog_268 | unknown function | unknown function | 1 | 41618 | 41842 |
| YP_009113156.1 | NC_026017_p9 | hypothetical protein | phrog_5672 | Rz-like spanin | lysis | 1 | 7998 | 8123 |
| YP_009113183.1 | NC_026017_p36 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 28601 | 28885 |
| YP_009113200.1 | NC_026017_p53 | endolysin | phrog_7 | endolysin | lysis | 1 | 40245 | 40730 |
| YP_009113196.1 | NC_026017_p49 | hypothetical protein | phrog_3766 | unknown function | unknown function | 1 | 38701 | 38904 |
| YP_009113170.1 | NC_026017_p23 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 15056 | 16186 |
| YP_009113178.1 | NC_026017_p31 | tail fiber protein | phrog_469 | tail protein | tail | 1 | 21072 | 23630 |
| YP_009113201.1 | NC_026017_p54 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 40921 | 41070 |
| YP_009113157.1 | NC_026017_p10 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 8208 | 8909 |
| YP_009113148.1 | NC_026017_p1 | hypothetical protein | phrog_3064 | terminase | head and packaging | 1 | 87 | 596 |
| YP_009113181.1 | NC_026017_p34 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 25916 | 28381 |
| YP_009113203.1 | NC_026017_p56 | hypothetical protein | phrog_1402 | unknown function | unknown function | 1 | 41219 | 41410 |
| YP_009113204.1 | NC_026017_p57 | hypothetical protein | phrog_9023 | unknown function | unknown function | 1 | 41403 | 41621 |
| YP_009113158.1 | NC_026017_p11 | hypothetical protein | phrog_247 | major head protein | head and packaging | 1 | 8913 | 9962 |
| YP_009113159.1 | NC_026017_p12 | hypothetical protein | phrog_1954 | virion structural protein | head and packaging | 1 | 10022 | 10402 |
| YP_009113192.1 | NC_026017_p45 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 34856 | 35074 |
| YP_009113175.1 | NC_026017_p28 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 19764 | 20207 |
| YP_009113151.1 | NC_026017_p4 | structural protein | phrog_145 | portal protein | head and packaging | 1 | 2812 | 4296 |
| YP_009113190.1 | NC_026017_p43 | hypothetical protein | phrog_4965 | unknown function | unknown function | -1 | 33936 | 34208 |
| YP_009113160.1 | NC_026017_p13 | hypothetical protein | phrog_4069 | Hoc-like head decoration | head and packaging | 1 | 10405 | 10755 |
| YP_009113176.1 | NC_026017_p29 | enolase-like protein | phrog_396 | minor tail protein | tail | 1 | 20204 | 20719 |
| YP_009113155.1 | NC_026017_p8 | spanin | phrog_2536 | Rz-like spanin | lysis | 1 | 7628 | 8014 |
| YP_009113198.1 | NC_026017_p51 | hypothetical protein | phrog_4947 | unknown function | unknown function | 1 | 39086 | 39451 |
| YP_009113194.1 | NC_026017_p47 | hypothetical protein | phrog_5169 | unknown function | unknown function | -1 | 37332 | 37565 |
| YP_009113187.1 | NC_026017_p40 | DNA polymerase | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 31723 | 32346 |
| YP_009113154.1 | NC_026017_p7 | hypothetical protein | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 6715 | 7254 |
| YP_009113189.1 | NC_026017_p42 | hypothetical protein | phrog_924 | unknown function | unknown function | -1 | 33682 | 33939 |
| YP_009113173.1 | NC_026017_p26 | hypothetical protein | phrog_4557 | unknown function | unknown function | 1 | 17020 | 17379 |
| YP_009113174.1 | NC_026017_p27 | tape measure protein | phrog_1538 | tail length tape measure protein | tail | 1 | 17372 | 19705 |
| YP_009113193.1 | NC_026017_p46 | hypothetical protein | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | -1 | 35089 | 37275 |
| YP_009113179.1 | NC_026017_p32 | hypothetical protein | phrog_1819 | tail spike protein | tail | 1 | 23643 | 25673 |
| YP_009113188.1 | NC_026017_p41 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 32441 | 33682 |
| YP_009113165.1 | NC_026017_p18 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 12457 | 12852 |
| YP_009113172.1 | NC_026017_p25 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 16598 | 17014 |
| YP_009113199.1 | NC_026017_p52 | class II holin-like protein | phrog_2508 | holin | lysis | 1 | 39995 | 40252 |
| YP_009113184.1 | NC_026017_p37 | hypothetical protein | phrog_14925 | unknown function | unknown function | -1 | 28882 | 29034 |
| YP_009113164.1 | NC_026017_p17 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 12101 | 12460 |
| YP_009113169.1 | NC_026017_p22 | hypothetical protein | phrog_2452 | unknown function | unknown function | -1 | 14829 | 15059 |
| YP_009113162.1 | NC_026017_p15 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 10984 | 11493 |
| YP_009113202.1 | NC_026017_p55 | hypothetical protein | phrog_4684 | unknown function | unknown function | 1 | 41067 | 41222 |
| YP_009113166.1 | NC_026017_p19 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 12849 | 13271 |
| YP_009113171.1 | NC_026017_p24 | hypothetical protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | -1 | 16249 | 16428 |
| YP_009113182.1 | NC_026017_p35 | hypothetical protein | phrog_4879 | unknown function | unknown function | -1 | 28378 | 28569 |
| YP_009113152.1 | NC_026017_p5 | structural protein | phrog_241 | head morphogenesis | head and packaging | 1 | 4366 | 6225 |
| YP_009113186.1 | NC_026017_p39 | hypothetical protein | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29238 | 31565 |
| YP_009113195.1 | NC_026017_p48 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 37562 | 37732 |
| YP_009113161.1 | NC_026017_p14 | hypothetical protein | phrog_4451 | unknown function | unknown function | 1 | 10792 | 10980 |
| YP_009113167.1 | NC_026017_p20 | major tail protein | phrog_290 | minor tail protein | tail | 1 | 13271 | 14437 |
| YP_009113185.1 | NC_026017_p38 | hypothetical protein | phrog_10404 | unknown function | unknown function | -1 | 29117 | 29248 |
| YP_009113163.1 | NC_026017_p16 | hypothetical protein | phrog_3614 | unknown function | unknown function | 1 | 11496 | 12101 |
| YP_009113149.1 | NC_026017_p2 | homing endonuclease | phrog_314 | homing endonuclease | DNA, RNA and nucleotide metabolism | 1 | 937 | 1428 |
| YP_009113153.1 | NC_026017_p6 | tail protein | phrog_3945 | Hoc-like head decoration | head and packaging | 1 | 6228 | 6686 |