Genomic map of Salmonella phage LSPA1 (NC_026017)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_026017
Definition
Salmonella phage LSPA1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus.
DB of origin
REFSEQ
Length
41880
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
58
%GC
50.48
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009113177.1 NC_026017_p30 hypothetical protein phrog_329 minor tail protein tail 1 20716 21081
YP_009113168.1 NC_026017_p21 hypothetical protein singleton unknown function unknown function -1 14491 14715
YP_009113191.1 NC_026017_p44 hypothetical protein phrog_3127 unknown function unknown function -1 34252 34722
YP_009113180.1 NC_026017_p33 hypothetical protein phrog_5915 unknown function unknown function -1 25758 25919
YP_009113197.1 NC_026017_p50 hypothetical protein singleton unknown function unknown function 1 38901 39089
YP_009113150.1 NC_026017_p3 terminase phrog_2 terminase large subunit head and packaging 1 1436 2662
YP_009113205.1 NC_026017_p58 hypothetical protein phrog_268 unknown function unknown function 1 41618 41842
YP_009113156.1 NC_026017_p9 hypothetical protein phrog_5672 Rz-like spanin lysis 1 7998 8123
YP_009113183.1 NC_026017_p36 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 28601 28885
YP_009113200.1 NC_026017_p53 endolysin phrog_7 endolysin lysis 1 40245 40730
YP_009113196.1 NC_026017_p49 hypothetical protein phrog_3766 unknown function unknown function 1 38701 38904
YP_009113170.1 NC_026017_p23 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 15056 16186
YP_009113178.1 NC_026017_p31 tail fiber protein phrog_469 tail protein tail 1 21072 23630
YP_009113201.1 NC_026017_p54 hypothetical protein phrog_2180 unknown function unknown function 1 40921 41070
YP_009113157.1 NC_026017_p10 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 8208 8909
YP_009113148.1 NC_026017_p1 hypothetical protein phrog_3064 terminase head and packaging 1 87 596
YP_009113181.1 NC_026017_p34 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 25916 28381
YP_009113203.1 NC_026017_p56 hypothetical protein phrog_1402 unknown function unknown function 1 41219 41410
YP_009113204.1 NC_026017_p57 hypothetical protein phrog_9023 unknown function unknown function 1 41403 41621
YP_009113158.1 NC_026017_p11 hypothetical protein phrog_247 major head protein head and packaging 1 8913 9962
YP_009113159.1 NC_026017_p12 hypothetical protein phrog_1954 virion structural protein head and packaging 1 10022 10402
YP_009113192.1 NC_026017_p45 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 34856 35074
YP_009113175.1 NC_026017_p28 hypothetical protein phrog_384 virion structural protein head and packaging 1 19764 20207
YP_009113151.1 NC_026017_p4 structural protein phrog_145 portal protein head and packaging 1 2812 4296
YP_009113190.1 NC_026017_p43 hypothetical protein phrog_4965 unknown function unknown function -1 33936 34208
YP_009113160.1 NC_026017_p13 hypothetical protein phrog_4069 Hoc-like head decoration head and packaging 1 10405 10755
YP_009113176.1 NC_026017_p29 enolase-like protein phrog_396 minor tail protein tail 1 20204 20719
YP_009113155.1 NC_026017_p8 spanin phrog_2536 Rz-like spanin lysis 1 7628 8014
YP_009113198.1 NC_026017_p51 hypothetical protein phrog_4947 unknown function unknown function 1 39086 39451
YP_009113194.1 NC_026017_p47 hypothetical protein phrog_5169 unknown function unknown function -1 37332 37565
YP_009113187.1 NC_026017_p40 DNA polymerase phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 31723 32346
YP_009113154.1 NC_026017_p7 hypothetical protein phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism -1 6715 7254
YP_009113189.1 NC_026017_p42 hypothetical protein phrog_924 unknown function unknown function -1 33682 33939
YP_009113173.1 NC_026017_p26 hypothetical protein phrog_4557 unknown function unknown function 1 17020 17379
YP_009113174.1 NC_026017_p27 tape measure protein phrog_1538 tail length tape measure protein tail 1 17372 19705
YP_009113193.1 NC_026017_p46 hypothetical protein phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism -1 35089 37275
YP_009113179.1 NC_026017_p32 hypothetical protein phrog_1819 tail spike protein tail 1 23643 25673
YP_009113188.1 NC_026017_p41 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 32441 33682
YP_009113165.1 NC_026017_p18 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 12457 12852
YP_009113172.1 NC_026017_p25 hypothetical protein phrog_313 Tail assembly chaperone tail 1 16598 17014
YP_009113199.1 NC_026017_p52 class II holin-like protein phrog_2508 holin lysis 1 39995 40252
YP_009113184.1 NC_026017_p37 hypothetical protein phrog_14925 unknown function unknown function -1 28882 29034
YP_009113164.1 NC_026017_p17 hypothetical protein phrog_161 head closure Hc1 connector 1 12101 12460
YP_009113169.1 NC_026017_p22 hypothetical protein phrog_2452 unknown function unknown function -1 14829 15059
YP_009113162.1 NC_026017_p15 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 10984 11493
YP_009113202.1 NC_026017_p55 hypothetical protein phrog_4684 unknown function unknown function 1 41067 41222
YP_009113166.1 NC_026017_p19 hypothetical protein phrog_179 tail terminator connector 1 12849 13271
YP_009113171.1 NC_026017_p24 hypothetical protein phrog_1039 immunity to superinfection moron, auxiliary metabolic gene and host takeover -1 16249 16428
YP_009113182.1 NC_026017_p35 hypothetical protein phrog_4879 unknown function unknown function -1 28378 28569
YP_009113152.1 NC_026017_p5 structural protein phrog_241 head morphogenesis head and packaging 1 4366 6225
YP_009113186.1 NC_026017_p39 hypothetical protein phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 29238 31565
YP_009113195.1 NC_026017_p48 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision -1 37562 37732
YP_009113161.1 NC_026017_p14 hypothetical protein phrog_4451 unknown function unknown function 1 10792 10980
YP_009113167.1 NC_026017_p20 major tail protein phrog_290 minor tail protein tail 1 13271 14437
YP_009113185.1 NC_026017_p38 hypothetical protein phrog_10404 unknown function unknown function -1 29117 29248
YP_009113163.1 NC_026017_p16 hypothetical protein phrog_3614 unknown function unknown function 1 11496 12101
YP_009113149.1 NC_026017_p2 homing endonuclease phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism 1 937 1428
YP_009113153.1 NC_026017_p6 tail protein phrog_3945 Hoc-like head decoration head and packaging 1 6228 6686